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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2512 fasta sequence
[CAATGACAATGATCAAAAGTTATGGGATGAAGATCCTCATGAATATGTTCGGAAGGGATATGATATCATTGAAGATTTGTACAGTCCTCGAACAGCTGCTATGGATTTTGTGAGTGAATTGGTAAGAAAACGAGGAAAAAGCAATCTCCAAAAGTTTATCCATTTCATTGTGGATATTTTTAGGAGATATGATGAGGCATCTATTGAAATCAAGCCATATCGCCAAAAAGATGGAGCACTTCTTGCTATTGGGACATGTGATAAGCTGAAGCAAACAGATCCATATAAAGCTGAGTTGGAGCGTATGCTGGTCCAGCATGTCTTCCCTGAGTTTAATAGTCATGTTGGACACCTGCGTGCCAAGGCTGCATGGGTTGCTGGACAGTATGCACATATCAGTTTTTCAGACCAGGACAATTTTCGGAAAGCTATGCATTGTATAGTTTCTGGAATGCGTGATCCAGATCTCCCTGTTCGGGTTGATTCAGTGTTTGCACTTCGTTCTTTTGTTGAAGCATGCAAAGATCTCAACGAGATACGACCTATACTCCCTCAACTCCTTGATGAATTTTTTAAACTGATGAATGAAGTTGAGAATGAGGATCTTGTTTTCACTCTTGAAACCATCGTTGATAAATTTGGTGAAGAGATGGCACCATATGCACTGGGGTTGTGCCAGAATTTGGCTGCTGCCTTCTGGAGATGCATGGCTAGTCAAGAAGCTGATGATGAAGCTGATGATTCTGGTGCTTTGGCAGCTGTTGGTTGTTTACGAGCCATAAGCACAATCCTTGAGTCTGTTAGCAGTCTCCCACACCTTTTTATTCAAATTGAGCCAACTCTGTTGCCAATAATGCGCAGGATGTTGACTTCTGATGGTCAAGATGTTTATGAGGAAGTTCTAGAAATTGTCTCATATATGACTTTTTTCTCACCATCAATTTCGTTGGACATGTGGAGCCTGTGGCCGTTGATGATGGAGGCTCTAAATGATTGGGCAATAGACTTCTTTGAGAATATTCTTGTTCCATTGGACAACTATGTTTCCCGGGGATCGGACCATTTTCTTGCCTGCAAAAACCCAGATTATCAGCAAAGCTTGTGGAGTGCACTATCATCTATTATGATGGATCAAAACATGGAAGATTCAGATATTGAGCCTGCTCCCAAGCTCATTGAGGTGGTTTTTCAAAACTGCAAAGGCAATGTGGATCAATGGGTTGAGCCTTACCTCAGTCTTACAATTGATCGATTGCGTCGAGCACACAAACCATATTTGAAATGTCTCCTTGTTCAAGTGATTGCTAATGCGTTCTACTACAACCCTTCTTTGACACTTGCAACCCTACATAAACTTGGGGCTGTGACTGAAATTTTTAACATTTGGTTTGGTATGTTAGAACAAGTCAAAAAGAGTGGTGTACGAGCCAATTTTAAGAGAGAGCATGATAAGAAAGTTTGTTGCTTGGGGTTGACCTCACTTATTAGCCTTCCAGCAGATCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGATCTGCTTGTTGCCTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGATGGTTTTGATGCTGATGAAGATGAAGATGATGATGAGGTTGTATCTGATAAGGAGATGGGACTTGATGAAGAAGATGCTGATGAAGTAAACAGTCTTCATCTTCAGAAATTAGCTGCTGAGGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGATTTCAGTGATGATGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGTCCAAGGCTTGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTTTCGTTATCAGGCCCTTGCTAGTGGCATAGCTCAACATGCTGAGGAAAGAAGAGTTGAGATTGAGAAAGAGAAGTTGGAGAAAGCAAATGCACAATGATTAGTCATAAAGTTCTTTGATATTATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACAGGCAATCAATTTTGGAGCCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTTGTCTAGATCTTACCGTGAGTTTCCATTGGTGGGCTGGGATATACGGTTACGTTT]
[+] EMBL AK068629 [CAATGACAATGATCAAAAGTTATGGGATGAAGATCCTCATGAATATGTTCGGAAGGGATATGATATCATTGAAGATTTGTACAGTCCTCGAACAGCTGCTATGGATTTTGTGAGTGAATTGGTAAGAAAACGAGGAAAAAGCAATCTCCAAAAGTTTATCCATTTCATTGTGGATATTTTTAGGAGATATGATGAGGCATCTATTGAAATCAAGCCATATCGCCAAAAAGATGGAGCACTTCTTGCTATTGGGACATGTGATAAGCTGAAGCAAACAGATCCATATAAAGCTGAGTTGGAGCGTATGCTGGTCCAGCATGTCTTCCCTGAGTTTAATAGTCATGTTGGACACCTGCGTGCCAAGGCTGCATGGGTTGCTGGACAGTATGCACATATCAGTTTTTCAGACCAGGACAATTTTCGGAAAGCTATGCATTGTATAGTTTCTGGAATGCGTGATCCAGATCTCCCTGTTCGGGTTGATTCAGTGTTTGCACTTCGTTCTTTTGTTGAAGCATGCAAAGATCTCAACGAGATACGACCTATACTCCCTCAACTCCTTGATGAATTTTTTAAACTGATGAATGAAGTTGAGAATGAGGATCTTGTTTTCACTCTTGAAACCATCGTTGATAAATTTGGTGAAGAGATGGCACCATATGCACTGGGGTTGTGCCAGAATTTGGCTGCTGCCTTCTGGAGATGCATGGCTAGTCAAGAAGCTGATGATGAAGCTGATGATTCTGGTGCTTTGGCAGCTGTTGGTTGTTTACGAGCCATAAGCACAATCCTTGAGTCTGTTAGCAGTCTCCCACACCTTTTTATTCAAATTGAGCCAACTCTGTTGCCAATAATGCGCAGGATGTTGACTTCTGATGGTCAAGATGTTTATGAGGAAGTTCTAGAAATTGTCTCATATATGACTTTTTTCTCACCATCAATTTCGTTGGACATGTGGAGCCTGTGGCCGTTGATGATGGAGGCTCTAAATGATTGGGCAATAGACTTCTTTGAGAATATTCTTGTTCCATTGGACAACTATGTTTCCCGGGGATCGGACCATTTTCTTGCCTGCAAAAACCCAGATTATCAGCAAAGCTTGTGGAGTGCACTATCATCTATTATGATGGATCAAAACATGGAAGATTCAGATATTGAGCCTGCTCCCAAGCTCATTGAGGTGGTTTTTCAAAACTGCAAAGGCAATGTGGATCAATGGGTTGAGCCTTACCTCAGTCTTACAATTGATCGATTGCGTCGAGCACACAAACCATATTTGAAATGTCTCCTTGTTCAAGTGATTGCTAATGCGTTCTACTACAACCCTTCTTTGACACTTGCAACCCTACATAAACTTGGGGCTGTGACTGAAATTTTTAACATTTGGTTTGGTATGTTAGAACAAGTCAAAAAGAGTGGTGTACGAGCCAATTTTAAGAGAGAGCATGATAAGAAAGTTTGTTGCTTGGGGTTGACCTCACTTATTAGCCTTCCAGCAGATCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGATCTGCTTGTTGCCTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGATGGTTTTGATGCTGATGAAGATGAAGATGATGATGAGGTTGTATCTGATAAGGAGATGGGACTTGATGAAGAAGATGCTGATGAAGTAAACAGTCTTCATCTTCAGAAATTAGCTGCTGAGGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGATTTCAGTGATGATGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGTCCAAGGCTTGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTTTCGTTATCAGGCCCTTGCTAGTGGCATAGCTCAACATGCTGAGGAAAGAAGAGTTGAGATTGAGAAAGAGAAGTTGGAGAAAGCAAATGCACAATGATTAGTCATAAAGTTCTTTGATATTATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACAGGCAATCAATTTTGGAGCCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTTGTCTAGATCTTACCGTGAGTTTCCATTGGTGGGCTGGGATATACGGTTACGTTT]
consensusID : consensus_887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[CCGCGGACGCGTGGGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTAAAAAAAAAA]
[+] EMBL BM420239 [CCGCGGACGCGTGGGGAAAATTTTAGGCTCGCAAAATTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGGAAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGGAAGTTTCTCCATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTTTTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGTATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_887#0 CAATGACAATGATCAAAAGTTATGGGATGAAGATCCTCATGAATATGTTCGGAAGGGATA 60
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TGATATCATTGAAGATTTGTACAGTCCTCGAACAGCTGCTATGGATTTTGTGAGTGAATT 120
consensus_887#1 ------------------------------------------------------------
consensus_887#0 GGTAAGAAAACGAGGAAAAAGCAATCTCCAAAAGTTTATCCATTTCATTGTGGATATTTT 180
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TAGGAGATATGATGAGGCATCTATTGAAATCAAGCCATATCGCCAAAAAGATGGAGCACT 240
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCTTGCTATTGGGACATGTGATAAGCTGAAGCAAACAGATCCATATAAAGCTGAGTTGGA 300
consensus_887#1 ------------------------------------------------------------
consensus_887#0 GCGTATGCTGGTCCAGCATGTCTTCCCTGAGTTTAATAGTCATGTTGGACACCTGCGTGC 360
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CAAGGCTGCATGGGTTGCTGGACAGTATGCACATATCAGTTTTTCAGACCAGGACAATTT 420
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCGGAAAGCTATGCATTGTATAGTTTCTGGAATGCGTGATCCAGATCTCCCTGTTCGGGT 480
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TGATTCAGTGTTTGCACTTCGTTCTTTTGTTGAAGCATGCAAAGATCTCAACGAGATACG 540
consensus_887#1 ------------------------------------------------------------
consensus_887#0 ACCTATACTCCCTCAACTCCTTGATGAATTTTTTAAACTGATGAATGAAGTTGAGAATGA 600
consensus_887#1 ------------------------------------------------------------
consensus_887#0 GGATCTTGTTTTCACTCTTGAAACCATCGTTGATAAATTTGGTGAAGAGATGGCACCATA 660
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TGCACTGGGGTTGTGCCAGAATTTGGCTGCTGCCTTCTGGAGATGCATGGCTAGTCAAGA 720
consensus_887#1 ------------------------------------------------------------
consensus_887#0 AGCTGATGATGAAGCTGATGATTCTGGTGCTTTGGCAGCTGTTGGTTGTTTACGAGCCAT 780
consensus_887#1 ------------------------------------------------------------
consensus_887#0 AAGCACAATCCTTGAGTCTGTTAGCAGTCTCCCACACCTTTTTATTCAAATTGAGCCAAC 840
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCTGTTGCCAATAATGCGCAGGATGTTGACTTCTGATGGTCAAGATGTTTATGAGGAAGT 900
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCTAGAAATTGTCTCATATATGACTTTTTTCTCACCATCAATTTCGTTGGACATGTGGAG 960
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CCTGTGGCCGTTGATGATGGAGGCTCTAAATGATTGGGCAATAGACTTCTTTGAGAATAT 1020
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCTTGTTCCATTGGACAACTATGTTTCCCGGGGATCGGACCATTTTCTTGCCTGCAAAAA 1080
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CCCAGATTATCAGCAAAGCTTGTGGAGTGCACTATCATCTATTATGATGGATCAAAACAT 1140
consensus_887#1 ------------------------------------------------------------
consensus_887#0 GGAAGATTCAGATATTGAGCCTGCTCCCAAGCTCATTGAGGTGGTTTTTCAAAACTGCAA 1200
consensus_887#1 ------------------------------------------------------------
consensus_887#0 AGGCAATGTGGATCAATGGGTTGAGCCTTACCTCAGTCTTACAATTGATCGATTGCGTCG 1260
consensus_887#1 ------------------------------------------------------------
consensus_887#0 AGCACACAAACCATATTTGAAATGTCTCCTTGTTCAAGTGATTGCTAATGCGTTCTACTA 1320
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CAACCCTTCTTTGACACTTGCAACCCTACATAAACTTGGGGCTGTGACTGAAATTTTTAA 1380
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CATTTGGTTTGGTATGTTAGAACAAGTCAAAAAGAGTGGTGTACGAGCCAATTTTAAGAG 1440
consensus_887#1 ------------------------------------------------------------
consensus_887#0 AGAGCATGATAAGAAAGTTTGTTGCTTGGGGTTGACCTCACTTATTAGCCTTCCAGCAGA 1500
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCATATTCCAGGAGAAGCCCTGAATCGTATTTTCAAAGCAACACTTGATCTGCTTGTTGC 1560
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CTACAAAGAGCAAGTGGCAGAATCTAAGAAACAAGATGATGCTGATGGTGATGATATGGA 1620
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TGGTTTTGATGCTGATGAAGATGAAGATGATGATGAGGTTGTATCTGATAAGGAGATGGG 1680
consensus_887#1 ------------------------------------------------------------
consensus_887#0 ACTTGATGAAGAAGATGCTGATGAAGTAAACAGTCTTCATCTTCAGAAATTAGCTGCTGA 1740
consensus_887#1 ------------------------------------------------------------
consensus_887#0 GGCCAGAGGCTTCCAGCCAGCTGATGAGTATGATGACTCTGATGACGATTTCAGTGATGA 1800
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TGAGGAGCTGCAATCACCAATAGATGAGGTTGACCCGTTCATTTTGTTTGTTGAAACTGT 1860
consensus_887#1 ------------------------------------------------------------
consensus_887#0 CCAAGGCTTGCAAGCATCTGATCCTATCAGGTTCCAGAGCCTCATGCAAACTCTTGATTT 1920
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TCGTTATCAGGCCCTTGCTAGTGGCATAGCTCAACATGCTGAGGAAAGAAGAGTTGAGAT 1980
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TGAGAAAGAGAAGTTGGAGAAAGCAAATGCACAATGATTAGTCATAAAGTTCTTTGATAT 2040
consensus_887#1 ------------------------------------------------------------
consensus_887#0 TATTGCCATTTCACCGGGTTGTGGAAGTGGTGGGCCATCTTGTGATTTGGCGCGACCACA 2100
consensus_887#1 ------------------------------------------------------------
consensus_887#0 GGCAATCAATTTTGGAGCCTTAGTCTGCCATTTAGGCAGGAAAATTTTAGGCTCGCAAAA 2160
consensus_887#1 ------------------------CCGCGGACGCGTGGGGAAAATTTTAGGCTCGCAAAA 36
* ** * **********************
consensus_887#0 TTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGG 2220
consensus_887#1 TTTTATACTTGCGAGAGTTGAAACCGGTGATAGAGCCTTCTTGGATAGTCTCTTCACCGG 96
************************************************************
consensus_887#0 AAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGG 2280
consensus_887#1 AAGTCATTTTCCTAGTGGCCCATCGGTCGGTGGCTTGGATTGTGCAAGCGTGACACTGGG 156
************************************************************
consensus_887#0 AAGTTTCTCCAATTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTT 2340
consensus_887#1 AAGTTTCTCCA-TTTGAGGGCACTAGCTTGTCATGCTGTTTGGGCCACTAATATATTTTT 215
*********** ************************************************
consensus_887#0 TTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGT 2400
consensus_887#1 TTTGCTGGGGGCTTAGCATTTGTTGGAGAGCCCCCCACTGGTGGCGGGGTGCATCTCCGT 275
************************************************************
consensus_887#0 ATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTTGT 2460
consensus_887#1 ATCACAGTTTGTAGGGCAGTTTACATTTAGACTGTAGAATGTATATGGTTTTGTTCTAAA 335
*********************************************************
consensus_887#0 CTAGATCTTACCGTGAGTTTCCATTGGTGGGCTGGGATATACGGTTACGTTT 2512
consensus_887#1 AAAAAAA--------------------------------------------- 342
* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||