These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2531 fasta sequence [CCGCGTCCCGGCCGGCTGCCGGCGCACTCACGGCGGCGATGCCCGTCGCGGCGGGGGAGGCCATGCCTCCGCTTCCGCCTCTGCCCTGACGGACCCCCTCGCTCCCCTCCTCCAGAATCCTCTTGCGTCCACGAGACCCGCCGCGATCTCGAATTCGCCGCTCCACCCATGACCTACCTGGCGACGTCCCAATCGTTCCAGTTTCCGATGATCGATTGCTCCCGCAACCGAAGGTTGGGGGGAGAGGAAGCTGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGTGGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGTGGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTTTGACTCTTTAATAGGACTGCTGCTTCATGCGTGTAATCATGCCAAGGAGTGGGGATGAACAGAAGAAAGGAGTACTCTCATATTCCGGCGGGCTGTGAAGAAGTGGGGTTAAAGCACCAAAGATTAAGACGGTATCCAGGATTCGACACGTCGGTGAGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAGTGTATACATGTTCTTTTAAGAGAACAAATTACAGCGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTACGTAACACATGTACTTTCGTCCTATTTCTTTCCTGGACATGTTTGCTTGCTTGATGTATATGCTCTAATAGTAAGCTAGGATTCCAGTGAATATCAATGCCTTTCTTCGTTCTTCTAATGGTACATGTTTAATCCATGGTACTATATATCAGTTAATTTTATAAAGAAATCTACGATAACTAAAGCAAAAATACGATCGATAACATTGAGAATTAAGACACTTTAATGATTACTCCAAAACCTAGTTCTCTCTGTCTCTCTCTAGTTAGTCTGGAGGTTGCAGATTGCATTGTGCATGCAAGGCTGCAAGAGACTAGTGTATTTTCCCCTTATCATCCTAGCTAGATATATTATAGTTCTATAGTTCTGTATACAGTTTGCTGCATTAACGAGCAGACTGCTCTACCTTAATTTGTTCGGCAATATTAACCATTTTACCCGGCAAAACCATCCCATTAAATAATTGTAATTGTATACTCTCTTCGGTCATAAATATTTGATATTTAAAACAAAATCTTGTGAAACTTTTGACCATTAATTGTTTTCTCAAAATGCTTTGTTTAAATGCATCAACTTATTCTAATATAAGATTGATGGGCAAAGTCTTAAAAATTTGACAATTTTAGTTCCATTTATGGCCAAAACTTGTGCAACCATTTACTTGCTCAATTTTTAAATATATAACACTGTTGATTTTTAGATATGATATTTAACCATTCATCTTATTAAAAAAATATGATGCAAATATTTTAAAAAAATATAAGTCACGCTTAACGTATTTTGTGTTAAACATCAAATTTATGACTGGAGGGAGCAATTGATTCATTCACCTGGCTACAGTACGCAGTACGTTCCGTGTGACAATTTTCGTTTCATTTTGTTCATTTGCATTTTATATTAATTCACGACAGCACAAAATCAGTTATTATATCTGTTATTTTCCATACAAGGTTTGTTTTTCTTGACTTTGCAAGGTTATAGCTAGACATAATACTTTTTTAATAAATTCTACGTTTTACCATTGACAAGTAATTGGTTCTACAAATTACCATCAACGAATCTAATTTTTACGAAATACCATCACACACGCACTTTTCTTTTTCTTTTTCATCGTTATTAATGGACTATTAGTTGATTGACTTAGATAAACCCCATATAAAAAGTTCACTTTACCCTAAAATATAAGGACTGCCTAAGCTGATATTGCACTTCTAAGGGTGGTCTCTAGAACACCACAAAATAGATTTTTCTCCCGCCTCCTCTATATACTAGTACTAAGTACTTATATAGTACATGGGGAACCTTGAGTAAAGGGATCGGACAAATCTATTATAACTTATTAAAGGAATAGTAAAAGGAGCATTCACGTTCACTCTCACAGCTTAGAAATTCTCACATTAATCGGGGAAAAAGAAAAAACAGAGTCCATATAGGAATACAATTTAAAAACAGCTGAAACTCGGAATTTTAAATAGGGAATATAGAAAAAAGAGACTAGAGTCCATACCGGTATACAATTTTGAACTGTTTGAAATTCAGAATTAAAAAATAGGAAAACTAAAACTAGAGGTCAGAGTCCCTATAGAAATACAATTAATAAGAAATATTGAAAGAAGATTATATAGCCCATATAGAATATAATTTAGAAAAGAATAAAATTCGGAATTAAAAAATAAAAAAATATTAAAAGATGAGTTTAGAGTCCATATAGAAATACAATTAGAAACAACGAAAATTTGGAAATTAAAAAAGGAATATTGAAAGAAGATTCTAGAGTTCATATAGGAATTTAGAACAAACTG] [+] EMBL AK070396 [CCGCGTCCCGGCCGGCTGCCGGCGCACTCACGGCGGCGATGCCCGTCGCGGCGGGGGAGGCCATGCCTCCGCTTCCGCCTCTGCCCTGACGGACCCCCTCGCTCCCCTCCTCCAGAATCCTCTTGCGTCCACGAGACCCGCCGCGATCTCGAATTCGCCGCTCCACCCATGACCTACCTGGCGACGTCCCAATCGTTCCAGTTTCCGATGATCGATTGCTCCCGCAACCGAAGGTTGGGGGGAGAGGAAGCTGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGTGGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGTGGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTTTGACTCTTTAATAGGACTGCTGCTTCATGCGTGTAATCATGCCAAGGAGTGGGGATGAACAGAAGAAAGGAGTACTCTCATATTCCGGCGGGCTGTGAAGAAGTGGGGTTAAAGCACCAAAGATTAAGACGGTATCCAGGATTCGACACGTCGGTGAGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAGTGTATACATGTTCTTTTAAGAGAACAAATTACAGCGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTACGTAACACATGTACTTTCGTCCTATTTCTTTCCTGGACATGTTTGCTTGCTTGATGTATATGCTCTAATAGTAAGCTAGGATTCCAGTGAATATCAATGCCTTTCTTCGTTCTTCTAATGGTACATGTTTAATCCATGGTACTATATATCAGTTAATTTTATAAAGAAATCTACGATAACTAAAGCAAAAATACGATCGATAACATTGAGAATTAAGACACTTTAATGATTACTCCAAAACCTAGTTCTCTCTGTCTCTCTCTAGTTAGTCTGGAGGTTGCAGATTGCATTGTGCATGCAAGGCTGCAAGAGACTAGTGTATTTTCCCCTTATCATCCTAGCTAGATATATTATAGTTCTATAGTTCTGTATACAGTTTGCTGCATTAACGAGCAGACTGCTCTACCTTAATTTGTTCGGCAATATTAACCATTTTACCCGGCAAAACCATCCCATTAAATAATTGTAATTGTATACTCTCTTCGGTCATAAATATTTGATATTTAAAACAAAATCTTGTGAAACTTTTGACCATTAATTGTTTTCTCAAAATGCTTTGTTTAAATGCATCAACTTATTCTAATATAAGATTGATGGGCAAAGTCTTAAAAATTTGACAATTTTAGTTCCATTTATGGCCAAAACTTGTGCAACCATTTACTTGCTCAATTTTTAAATATATAACACTGTTGATTTTTAGATATGATATTTAACCATTCATCTTATTAAAAAAATATGATGCAAATATTTTAAAAAAATATAAGTCACGCTTAACGTATTTTGTGTTAAACATCAAATTTATGACTGGAGGGAGCAATTGATTCATTCACCTGGCTACAGTACGCAGTACGTTCCGTGTGACAATTTTCGTTTCATTTTGTTCATTTGCATTTTATATTAATTCACGACAGCACAAAATCAGTTATTATATCTGTTATTTTCCATACAAGGTTTGTTTTTCTTGACTTTGCAAGGTTATAGCTAGACATAATACTTTTTTAATAAATTCTACGTTTTACCATTGACAAGTAATTGGTTCTACAAATTACCATCAACGAATCTAATTTTTACGAAATACCATCACACACGCACTTTTCTTTTTCTTTTTCATCGTTATTAATGGACTATTAGTTGATTGACTTAGATAAACCCCATATAAAAAGTTCACTTTACCCTAAAATATAAGGACTGCCTAAGCTGATATTGCACTTCTAAGGGTGGTCTCTAGAACACCACAAAATAGATTTTTCTCCCGCCTCCTCTATATACTAGTACTAAGTACTTATATAGTACATGGGGAACCTTGAGTAAAGGGATCGGACAAATCTATTATAACTTATTAAAGGAATAGTAAAAGGAGCATTCACGTTCACTCTCACAGCTTAGAAATTCTCACATTAATCGGGGAAAAAGAAAAAACAGAGTCCATATAGGAATACAATTTAAAAACAGCTGAAACTCGGAATTTTAAATAGGGAATATAGAAAAAAGAGACTAGAGTCCATACCGGTATACAATTTTGAACTGTTTGAAATTCAGAATTAAAAAATAGGAAAACTAAAACTAGAGGTCAGAGTCCCTATAGAAATACAATTAATAAGAAATATTGAAAGAAGATTATATAGCCCATATAGAATATAATTTAGAAAAGAATAAAATTCGGAATTAAAAAATAAAAAAATATTAAAAGATGAGTTTAGAGTCCATATAGAAATACAATTAGAAACAACGAAAATTTGGAAATTAAAAAAGGAATATTGAAAGAAGATTCTAGAGTTCATATAGGAATTTAGAACAAACTG] consensusID : consensus_8888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1331 fasta sequence [ACCAGCAACCACTCGAGACTGTTTATCTCGTGTTTACCTACACACCACGAGCTACTATACACACACCCTCTCGATCTCATCACCGGTATTCACCTTCTCTCCCTTCAGTACGTTCTCAAGAGATTAGCCTCTTGCAGCTAGCCACCATGTCTAGGGTGCTGGAGCCTCTCGTCGTCGGGAAGGTGATCGGAGAGGTCATCGACAACTTCAACCCCACGGTGAAGATGACGGCGACCTACAGCTCCAACAAGCAGGTGTTCAACGGCCACGAGTTATTCCCGTCGGCGGTCGTGTCCAAGCCGCGAGTCGAGGTTCAGGGCGGCGACCTGAGGTCTTTCTTCACACTGGTTATGACAGATCCAGACGTGCCAGGGCCTAGTGATCCGTACCTGAGGGAGCACCTCCACTGGATCGTCACTGATATTCCTGGCACCACTGATGCTTCCTTTGGGAGGGAGGTGGTGAGCTACGAGAGCCCGAAGCCCAACATTGGCATCCACAGGTTCGTCCTCGTGCTGTTCAAGCAGAAGCGCCGTCAGGCGGTGACCCCGCCATCCTCCAGGGACTACTTCAGCACCCGCCGCTTCGCCGCCGACAACGACCTCGGCCTCCCCGTCGCCGCCGTCTACTTCAACGCGCAGCGAGAGACGGCCGCTCGCCGCCGCTAATTAACCAAACTGCCAAAAACCAAATTAAGCCCCTCTTGCAGGCATGCAATATGCCTCCTGCAATATTAATTGCAGATGCAGCTAGCCTTCCAAACTATATATTGCAACTAATTAAGAATGGACTACTACATATATAATCTAGGGATCGATTGAGCTAGATCACCTAGTGGCATATATATATCAGCCACTATTAGCTTAGCCATGTATGAACCAAATAAGAACTCGGTGCAGCAAGCGCGAGCCACTGTTTAGTTCGTCAGTGTAGTTAATTGGTATATATGCCTATATATCCGTGTCTGCAAGAGCTAGGTGAGACACGTGAGACGTACTCGCCTCGTACGTGTTGCACTATAGCTTGAGTCAATCTCAAGCTCCTGCGTATATCCAGCTGAAGATCGCAATGTTCGCCGGCGGCGAAACAGCTGGTGCTGGGAGAGGCGAAAGGCGATGCATAATGCATTGTGTTGACTGGGAGCAGTTTAAATTGACGTGTCGGGCGGCGAAGGCAGGAAGAGGAAGTGGCCATGGCTCTCTAGTACTCACTTTGTCAGTTACAAGCTACTATATTTATCCTGTTATGTGCGTGTGTGAGTGGCTGCAGCTAGCTATATATGCACTTTTGCAGCTTGCAGTAACGTGTTTGTACTTTTATGGCATGATCCT] [+] EMBL AK110622 [ACCAGCAACCACTCGAGACTGTTTATCTCGTGTTTACCTACACACCACGAGCTACTATACACACACCCTCTCGATCTCATCACCGGTATTCACCTTCTCTCCCTTCAGTACGTTCTCAAGAGATTAGCCTCTTGCAGCTAGCCACCATGTCTAGGGTGCTGGAGCCTCTCGTCGTCGGGAAGGTGATCGGAGAGGTCATCGACAACTTCAACCCCACGGTGAAGATGACGGCGACCTACAGCTCCAACAAGCAGGTGTTCAACGGCCACGAGTTATTCCCGTCGGCGGTCGTGTCCAAGCCGCGAGTCGAGGTTCAGGGCGGCGACCTGAGGTCTTTCTTCACACTGGTTATGACAGATCCAGACGTGCCAGGGCCTAGTGATCCGTACCTGAGGGAGCACCTCCACTGGATCGTCACTGATATTCCTGGCACCACTGATGCTTCCTTTGGGAGGGAGGTGGTGAGCTACGAGAGCCCGAAGCCCAACATTGGCATCCACAGGTTCGTCCTCGTGCTGTTCAAGCAGAAGCGCCGTCAGGCGGTGACCCCGCCATCCTCCAGGGACTACTTCAGCACCCGCCGCTTCGCCGCCGACAACGACCTCGGCCTCCCCGTCGCCGCCGTCTACTTCAACGCGCAGCGAGAGACGGCCGCTCGCCGCCGCTAATTAACCAAACTGCCAAAAACCAAATTAAGCCCCTCTTGCAGGCATGCAATATGCCTCCTGCAATATTAATTGCAGATGCAGCTAGCCTTCCAAACTATATATTGCAACTAATTAAGAATGGACTACTACATATATAATCTAGGGATCGATTGAGCTAGATCACCTAGTGGCATATATATATCAGCCACTATTAGCTTAGCCATGTATGAACCAAATAAGAACTCGGTGCAGCAAGCGCGAGCCACTGTTTAGTTCGTCAGTGTAGTTAATTGGTATATATGCCTATATATCCGTGTCTGCAAGAGCTAGGTGAGACACGTGAGACGTACTCGCCTCGTACGTGTTGCACTATAGCTTGAGTCAATCTCAAGCTCCTGCGTATATCCAGCTGAAGATCGCAATGTTCGCCGGCGGCGAAACAGCTGGTGCTGGGAGAGGCGAAAGGCGATGCATAATGCATTGTGTTGACTGGGAGCAGTTTAAATTGACGTGTCGGGCGGCGAAGGCAGGAAGAGGAAGTGGCCATGGCTCTCTAGTACTCACTTTGTCAGTTACAAGCTACTATATTTATCCTGTTATGTGCGTGTGTGAGTGGCTGCAGCTAGCTATATATGCACTTTTGCAGCTTGCAGTAACGTGTTTGTACTTTTATGGCATGATCCT] consensusID : consensus_8888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1027 fasta sequence [TGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGTGGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGTGGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTTTGACTCTTTAATAGGACTGCTGCTTCATGCGTGTAATCATGCCAAGGAGTGGGGATGAACAGAAGAAAGGAGTACTCTCATATTCCGGCGGGCTGTGAAGAAGTGGGGTTAAAGCACCAAAGATTAAGACGGTATCCAGGATTCGACACGTCGGTGAGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGAGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTAGGAACTTGCAGTGGTTGTCTACCGGAGGGTGTTTCGCTAGGTGAGGGGCGGCAGGCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCGCCCTGAACCTCGACGCGCGGCTTGGACACGACCGCCGACGGGAAGAACTCGTGGCCGTTGAACACCTGCTTGTTGGAGCTGTAGGTCGCCGTCATCTTCACCGTGGGGTTGAAGTTGTCGATGACCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAGACATGGTGGCTAGCTGCAAGAGGCTAATCTCTTGAGAACGTACTGAAGGGAGAGAAGGTGAATACCGGTGATGAGATCGTGAGGGTGTGTGTATAGTAGCTCGTGGTGTGTAGGTAAACACGAGATAAACAGTCTCGAGTGGTTGCTGGTCTTGCTGATGACAATGGGAGGGCCGGCCGGGGCTCTATTTATAGCTGCGTGGAGCCGATGGATCGAACTGATAAGGAAAATGTATAGACAATGTAAAGTATTAGAAAATATGTAAATTGTCCCATCTTCATTTTCGCCTA] [+] EMBL CB627988 [TGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGTGGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGTGGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTTTGACTCTTTAATAGGACTGCTGCTTCATGCGTGTAATCATGCCAAGGAGTGGGGATGAACAGAAGAAAGGAGTACTCTCATATTCCGGCGGGCTGTGAAGAAGTGGGGTTAAAGCACCAAAGATTAAGACGGTATCCAGGATTCGACACGTCGGTGAGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGAGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTAGGAACTTGCAGTGGTTGTCTACCGGAGGGTGTTTCGCTAGGTGAGGGGCGGCAGGCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCGCCCTGAACCTCGACGCGCGGCTTGGACACGACCGCCGACGGGAAGAACTCGTGGCCGTTGAACACCTGCTTGTTGGAGCTGTAGGTCGCCGTCATCTTCACCGTGGGGTTGAAGTTGTCGATGACCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAGACATGGTGGCTAGCTGCAAGAGGC ] [-] EMBL CB627989 [ GAGTGGGGATGAACAGAAGAAAGGAGTACTCTCATATTCCGGCGGGCTGTGAAGAAGTGGGGTTAAAGCACCAAAGATTAAGACGGTATCCAGGATTCGACACGTCGGTGAGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGAGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTAGGAACTTGCAGTGGTTGTCTACCGGAGGGTGTTTCGCTAGGTGAGGGGCGGCAGGCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCGCCCTGAACCTCGACGCGCGGCTTGGACACGACCGCCGACGGGAAGAACTCGTGGCCGTTGAACACCTGCTTGTTGGAGCTGTAGGTCGCCGTCATCTTCACCGTGGGGTTGAAGTTGTCGATGACCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAGACATGGTGGCTAGCTGCAAGAGGCTAATCTCTTGAGAACGTACTGAAGGGAGAGAAGGTGAATACCGGTGATGAGATCGTGAGGGTGTGTGTATAGTAGCTCGTGGTGTGTAGGTAAACACGAGATAAACAGTCTCGAGTGGTTGCTGGTCTTGCTGATGACAATGGGAGGGCCGGCCGGGGCTCTATTTATAGCTGCGTGGAGCCGATGGATCGAACTGATAAGGAAAATGTATAGACAATGTAAAGTATTAGAAAATATGTAAATTGTCCCATCTTCATTTTCGCCTA] consensusID : consensus_8888#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCCTCTTATGGCCCTCAAGCGGGGATTAAATCACTTGTAAAAATAATGATNTATATTTACCCAGTGAAGNTCCTCCCCTCAGTTNAGGGGCGGCAGNCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCGCCCTGAACCTCGANTCGCGGCTTGGACACGACCGCCGACGGGAATANCTCGTGGCCGTTGAACACCTGCTTGTTGGAGCTGTAGGTCGCCGTCATCTTCACCGTGGGGTTGAAGTTGTCGATGACCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAGACATGGTGGCTAGCTGCAAGAGGCTAATCTCTTGAGAACGTACTGAAGGGAGAGAAGGTGAATACCGGTGATGAGATCGAGAGGGTGTGTGTATAGTAGCTCGTGGTGTGTAGGTAAACACGAGATAAACAGTCTCGAGTGGTTGCTGGTCTTGCTGATGACAATGGGAGGGCCGGCCGGGGCTCTATTTATAGCTGCGTGGAGCCGATGGATCGAACTGATAAGGAAAATGTATAAACAATGTAAAGTATTAGAAAATATGTAAATTGTCCCATCTTCAAAAA] [+] EMBL AU093964 [CCCTCTTATGGCCCTCAAGCGGGGATTAAATCACTTGTAAAAATAATGATNTATATTTACCCAGTGAAGNTCCTCCCCTCAGTTNAGGGGCGGCAGNCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCGCCCTGAACCTCGANTCGCGGCTTGGACACGACCGCCGACGGGAATANCTCGTGGCCGTTGAACACCTGCTTGTTGGAGCTGTAGGTCGCCGTCATCTTCACCGTGGGGTTGAAGTTGTCGATGACCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAGACATGGTGGCTAGCTGCAAGAGGCTAATCTCTTGAGAACGTACTGAAGGGAGAGAAGGTGAATACCGGTGATGAGATCGAGAGGGTGTGTGTATAGTAGCTCGTGGTGTGTAGGTAAACACGAGATAAACAGTCTCGAGTGGTTGCTGGTCTTGCTGATGACAATGGGAGGGCCGGCCGGGGCTCTATTTATAGCTGCGTGGAGCCGATGGATCGAACTGATAAGGAAAATGTATAAACAATGTAAAGTATTAGAAAATATGTAAATTGTCCCATCTTCAAAAA] consensusID : consensus_8888#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [AGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGCGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTAGGAACTTGCAGTGGTTGTCTACCGGAGGGTGTTTCGCTAGGAGCCATCTATGGCCTCAGCGGGGATTAATTACTTGTAAAATAATGATATATATTTACCAGTGGAGGTGCTCCCTCAGGTGANGGGGCCGGCANGCACAGACCAGTNTTAAGAAAAGACCTCANGTCGCCGCCCTGAACCTCGACTCGCGGCTTGGACAAGAACGCCGAGGGGAATACTCGTGGGCCGTTGAACACCTTCTTTTTTGGA] [+] EMBL C72334 [AGGCTACCTTCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAATACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGCGACAAGGATTGGAAGGTCCATGGACGTCAAAAGGTAGGAACTTGCAGTGGTTGTCTACCGGAGGGTGTTTCGCTAGGAGCCATCTATGGCCTCAGCGGGGATTAATTACTTGTAAAATAATGATATATATTTACCAGTGGAGGTGCTCCCTCAGGTGANGGGGCCGGCANGCACAGACCAGTNTTAAGAAAAGACCTCANGTCGCCGCCCTGAACCTCGACTCGCGGCTTGGACAAGAACGCCGAGGGGAATACTCGTGGGCCGTTGAACACCTTCTTTTTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 CCGCGTCCCGGCCGGCTGCCGGCGCACTCACGGCGGCGATGCCCGTCGCGGCGGGGGAGG 60 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 CCATGCCTCCGCTTCCGCCTCTGCCCTGACGGACCCCCTCGCTCCCCTCCTCCAGAATCC 120 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TCTTGCGTCCACGAGACCCGCCGCGATCTCGAATTCGCCGCTCCACCCATGACCTACCTG 180 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 GCGACGTCCCAATCGTTCCAGTTTCCGATGATCGATTGCTCCCGCAACCGAAGGTTGGGG 240 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 -----------TGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGT 49 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 GGAGAGGAAGCTGCAGGGTTACTCGAGGCGTGATCGCTGACGGGGGCCGCACCGCCGCGT 300 consensus_8888#1 ACCAGCAACCACTCGAGACTGTTTATCTCGTGTTTACCTACACACCACGAGCTACTATAC 60 consensus_8888#2 GGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGT 109 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 GGAGCAGCCGCTCCGACTCCGAGCCATACTTGGTACATTCCCCATATTAGGATGTTGCGT 360 consensus_8888#1 ACA-CACCCTCTCGATCTCATCACCGGTATTCACCTTCTCTCCCTTCAGTACGTTCTCAA 119 consensus_8888#2 GGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTT 169 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 GGCTGGACATCTTCAAGGTTCCCATTGGAGTCTAGAATGTTGCGCATTCCTTGTGTTGTT 420 consensus_8888#1 GAGATTAGCCTCTTGCAGCTAGCCACCATGTCTAGGGTGCTGGAGCCTCTCGTCGTCGGG 179 consensus_8888#2 TGACTCTTTAATAGGACTGCTG----CTTCATGCGTGTAATCATGCCAAGGAGTGGGGAT 225 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TGACTCTTTAATAGGACTGCTG----CTTCATGCGTGTAATCATGCCAAGGAGTGGGGAT 476 consensus_8888#1 AAGGTGATCGGAGAGGTCATCGACAACTTCAACCCCACGGTGAAGATGACGGCGACCTAC 239 consensus_8888#2 GAACAGAAGAAAGGAGTACTCT-------CATATTCCGGCGGGCTGTGAAGAAGTGGGGT 278 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 GAACAGAAGAAAGGAGTACTCT-------CATATTCCGGCGGGCTGTGAAGAAGTGGGGT 529 consensus_8888#1 AGCTCCAACAAGCAGGTGTTCAACGGCCACGAGTTATTCCCGTCGGCGGTCGTGTCCAAG 299 consensus_8888#2 TAAAGCACCAAAGATTAAGACGGTATCCAGGA----TTCGACACGTCGGTGAGGCTACCT 334 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TAAAGCACCAAAGATTAAGACGGTATCCAGGA----TTCGACACGTCGGTGAGGCTACCT 585 consensus_8888#1 CCGCGAGTCGAGGTTCAGGGCGGCGACCTGAGGTCTTTCTTCACACTGGTTATGACAGAT 359 consensus_8888#2 TCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAAT 394 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TCAAGTCTGGAGTGGCTCGAAGACCGAGGAATATCCTGTCTGTTGCAAAGACCTAGCAAT 645 consensus_8888#1 CCAGACGTGCCAGGGCCTAGTGATCCGTACCTGAGGGAGCACCTCCACTGGATCGTCACT 419 consensus_8888#2 ACTTGATGATGAATGTATACATGTTCTTTTAAGAGAACAAATTACAGAGACAAGGATTGG 454 consensus_8888#3 ------------------------------------CCCTCTTATGGCCCTCAAG---CG 21 consensus_8888#4 --------------------------------------------AGGCTACCTTC----A 12 consensus_8888#0 ACTTGATGATGAGTGTATACATGTTCTTTTAAGAGAACAAATTACAGCGACAAGGATTGG 705 consensus_8888#1 GATATTCCTGGCACCACTGATGCTTCCTTTGGGAGGGAGGTGGTGAGCTACGAGAGCCCG 479 * consensus_8888#2 AAGGTC--CATGGACGTCAAAAGGTA-GGAACTTGCAGTGGTTGTCTACCG-GAGGGTGT 510 consensus_8888#3 GGGATT--AAATCACTTGTAAAAATA-ATGATNTATAT---TTACCCAGTG-AAGNTCCT 74 consensus_8888#4 AGTCTG--GAGTGGCTCGAAGACCGA-GGAATATCC------TGTCTGTTGCAAAGACCT 63 consensus_8888#0 AAGGTC--CATGGACGTCAAAAGGTACGTAACACATGTA---CTTTCGTCCTATTTCTTT 760 consensus_8888#1 AAGCCCAACATTGGCATCCACAGGTT-----CGTCCTCGTGCTGTTCAAGCAGAAGCGCC 534 * * * * consensus_8888#2 TTCGCTAGGTGAGG--GGCGGCAGGCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCG 568 consensus_8888#3 CCCCTCAGTTNAGG--GGCGGCAGNCACAGACCAGTGTGAAGAAAGACCTCAGGTCGCCG 132 consensus_8888#4 AGCAATACTTGATG--ATGAATGTATACATGTTCTTTTAAGAGAA-----CAAATTACAG 116 consensus_8888#0 CCTGGACATGTTTG--CTTGCTTGATGTATATGCTCTAATAGTAAG--CTAGGATTCCAG 816 consensus_8888#1 GTCAGGCGGTGACCCCGCCATCCTCCAGGGACTACTTCAGCACCCGCCGCTTCGCCGCCG 594 * * consensus_8888#2 CCCTGAACCTCGACGCGCGGCTTGGACACGACCGCCG-ACGGGAAGAACTCGTGGCCGTT 627 consensus_8888#3 CCCTGAACCTCGANTCGCGGCTTGGACACGACCGCCG-ACGGGAATANCTCGTGGCCGTT 191 consensus_8888#4 CGACAAGGATTGGAAGGTC-CATGGACGTCA-----A-AAGGTAGGAACTTGCAGTGGTT 169 consensus_8888#0 ---TGAATATCAATGCCTTTCTTCGTTCTTCTAATGGTACATGTTTAATCCATGGT-ACT 872 consensus_8888#1 ACAACGACCTCGGCCTCCC-CGTCGCCGCCGTCTACTTCAACGCGCAGCGAGAGACGGCC 653 * * * * * consensus_8888#2 GAACACCTGCTTGT-TGGAGCTGTAGGTCGCCGTCATCTTCACC----GTGGGGTTGAAG 682 consensus_8888#3 GAACACCTGCTTGT-TGGAGCTGTAGGTCGCCGTCATCTTCACC----GTGGGGTTGAAG 246 consensus_8888#4 GTCTACCGGAGGGTGTTTCGCTAGGAGCCATCTATGGCCTCA------GCGGGGATTAAT 223 consensus_8888#0 ATATATCAGTTAAT-TTTATAAAGAAATCTACGATAACTAAAGCAAAAATACGATCGATA 931 consensus_8888#1 GCTCGCC-GCCGCTAATTAACCA--AACTGCCAAAAACCAAATTA--AGCCCCTCTTGCA 708 * * * * * * consensus_8888#2 TTGTCGATGA-----CCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAG 737 consensus_8888#3 TTGTCGATGA-----CCTCTCCGATCACCTTCCCGACGACGAGAGGCTCCAGCACCCTAG 301 consensus_8888#4 TACTTGTAAA-----ATAATGATATATATTTACCAGTG--GAGGTGCTCC-----CTCAG 271 consensus_8888#0 ACATTGAGAATTAAGACACTTTAATGATTACTCCAAAACCTAGTTCTCTCTGT-CTCTCT 990 consensus_8888#1 GGCATGCAATATGC-CTCCTGCAATATTAATTGCAGATGCAGCTAGCCTT-----CCAAA 762 * * ** * consensus_8888#2 ACATGGTGGCTAGCTGCAAGAGGCTAATCTCTTGAGAACGTACTGAAGGGAGAGAAGGTG 797 consensus_8888#3 ACATGGTGGCTAGCTGCAAGAGGCTAATCTCTTGAGAACGTACTGAAGGGAGAGAAGGTG 361 consensus_8888#4 GTGANGGGGCCGGCANGCACAGACCAGTNT--TAAGAAAAGACCTCANGTCGCCGCCCTG 329 consensus_8888#0 CTAGTTAGTCTGGAGGTTGCAGATTGCATTGTGCATGCAAGGCTGCAAGAGACTAGTGTA 1050 consensus_8888#1 CTATATATTGCAACTAATTAAGAATGGACTACTACATATATAATCTAGGGATCGATTGAG 822 ** * * * consensus_8888#2 -AATACCGGTGATGAGATCGTGAGGGTGTGTGTATAGTAGCTCG---TGGTGTG---TAG 850 consensus_8888#3 -AATACCGGTGATGAGATCGAGAGGGTGTGTGTATAGTAGCTCG---TGGTGTG---TAG 414 consensus_8888#4 -AACCTCGACTCGCGGCTTGGACAAGAACGCCGAGGGGAATAC----TCGTGGG---CCG 381 consensus_8888#0 -TTTTCCCCTTATCATCCTAGCTAGATATAT-TATAGTTCTATAGTTCTGTATA---CAG 1105 consensus_8888#1 CTAGATCACCTAGTGGCATATATATATCAGCCACTATTAGCTTAGCCATGTATGAACCAA 882 * ** consensus_8888#2 GTAAACACGAGA-TAAACAGTCTCGAGTGG-TTGCTGGTCTTGCTGATGACAATGGGAGG 908 consensus_8888#3 GTAAACACGAGA-TAAACAGTCTCGAGTGG-TTGCTGGTCTTGCTGATGACAATGGGAGG 472 consensus_8888#4 TTGAACACCTT------CTTTTTTGGA--------------------------------- 402 consensus_8888#0 TTTGCTGCATTAACGAGCAGACTGCTCTACCTTAATTTGTTCGGCAATATTAACCATTTT 1165 consensus_8888#1 ATAAGAACTCGGTGCAGCAAGCGCGAGCCA-CTGTTTAGTTCGTCAGTGTAGTTAATTGG 941 * * * consensus_8888#2 GCCGGCCGGGGCTCTATTTATAGCTGCGTGGAGCCGATGGATCGAACTGATAAGGAAAAT 968 consensus_8888#3 GCCGGCCGGGGCTCTATTTATAGCTGCGTGGAGCCGATGGATCGAACTGATAAGGAAAAT 532 consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 ACCCGGCAAAACCATCCCATTAAATAATTGTAATTGTATACTCTCTTCGGTCATAAATAT 1225 consensus_8888#1 TATATATGCCTATATATCCGTGTCTGCAAGAGCTAGGTGAGACACGTGAGACGTACTCGC 1001 consensus_8888#2 GT-ATAGACAATGTAAAGTATTAGAAAATATGTAA--ATTGTCCCATCTTCATTTTCGCC 1025 consensus_8888#3 GT-ATAAACAATGTAAAGTATTAGAAAATATGTAA--ATTGTCCCATCTTCAAAAA---- 585 consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TTGATATTTAAAACAAAATCTTGTGAAACTTTTGACCATTAATTGTTTTCTCAAAATGCT 1285 consensus_8888#1 CTCGTACGTGTTGCACTATAGCTTGAGTCAATCTC---AAGCTCCTGCGTATATCCAGCT 1058 consensus_8888#2 TA---------------------------------------------------------- 1027 consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TTGTTTAAATGCATCAACTTATTCTAATATAAGATTGATGGGCAAAGTCTTAAAAATTTG 1345 consensus_8888#1 GAAGATCGCAATGTTCGCCGGCGGCGAAACAGCTGGTGCTGGGAGAGGCGAAAGGCGATG 1118 consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 ACAATTTTAGTTCCATTTATGGCCAAAACTTGTGCAACCATTTACTTGCTCAATTTTTAA 1405 consensus_8888#1 CATAATGCATTGTGTTGACTGGGAGCAGTTTAAATTGACGTGTCGGGCGGCGAAGGCAGG 1178 consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 ATATATAACACTGTTGATTTTTAGATATGATATTTAACCATTCATCTTATTAAAAAAATA 1465 consensus_8888#1 AAGAGGAAGTGGCCATGGCTCTCTAGTACTCACTTTGTCAGTTACAAGCTACTATATTTA 1238 consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TGATGCAAATATTTTAAAAAAATATAAGTCACGCTTAACGTATTTTGTGTTAAACATCAA 1525 consensus_8888#1 TCCTGTTATGTGCGTGTGTGAGTGGCTGCAGCTAGCTATATATGCACTTTTGCAGCTTGC 1298 consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 ATTTATGACTGGAGGGAGCAATTGATTCATTCACCTGGCTACAGTACGCAGTACGTTCCG 1585 consensus_8888#1 AGTAACGTGTTTGTACTTTTATGGCATGATCCT--------------------------- 1331 consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TGTGACAATTTTCGTTTCATTTTGTTCATTTGCATTTTATATTAATTCACGACAGCACAA 1645 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 AATCAGTTATTATATCTGTTATTTTCCATACAAGGTTTGTTTTTCTTGACTTTGCAAGGT 1705 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TATAGCTAGACATAATACTTTTTTAATAAATTCTACGTTTTACCATTGACAAGTAATTGG 1765 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TTCTACAAATTACCATCAACGAATCTAATTTTTACGAAATACCATCACACACGCACTTTT 1825 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 CTTTTTCTTTTTCATCGTTATTAATGGACTATTAGTTGATTGACTTAGATAAACCCCATA 1885 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TAAAAAGTTCACTTTACCCTAAAATATAAGGACTGCCTAAGCTGATATTGCACTTCTAAG 1945 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 GGTGGTCTCTAGAACACCACAAAATAGATTTTTCTCCCGCCTCCTCTATATACTAGTACT 2005 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 AAGTACTTATATAGTACATGGGGAACCTTGAGTAAAGGGATCGGACAAATCTATTATAAC 2065 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TTATTAAAGGAATAGTAAAAGGAGCATTCACGTTCACTCTCACAGCTTAGAAATTCTCAC 2125 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 ATTAATCGGGGAAAAAGAAAAAACAGAGTCCATATAGGAATACAATTTAAAAACAGCTGA 2185 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 AACTCGGAATTTTAAATAGGGAATATAGAAAAAAGAGACTAGAGTCCATACCGGTATACA 2245 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 ATTTTGAACTGTTTGAAATTCAGAATTAAAAAATAGGAAAACTAAAACTAGAGGTCAGAG 2305 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TCCCTATAGAAATACAATTAATAAGAAATATTGAAAGAAGATTATATAGCCCATATAGAA 2365 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TATAATTTAGAAAAGAATAAAATTCGGAATTAAAAAATAAAAAAATATTAAAAGATGAGT 2425 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ------------------------------------------------------------ consensus_8888#3 ------------------------------------------------------------ consensus_8888#4 ------------------------------------------------------------ consensus_8888#0 TTAGAGTCCATATAGAAATACAATTAGAAACAACGAAAATTTGGAAATTAAAAAAGGAAT 2485 consensus_8888#1 ------------------------------------------------------------ consensus_8888#2 ---------------------------------------------- consensus_8888#3 ---------------------------------------------- consensus_8888#4 ---------------------------------------------- consensus_8888#0 ATTGAAAGAAGATTCTAGAGTTCATATAGGAATTTAGAACAAACTG 2531 consensus_8888#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||