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Oryza sativa
cluster # 8899 cluster # 8899       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8899#0 length = 1953 sequences # 6  

consensusID : consensus_8899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1953
fasta sequence
                              [GCATCGTTCGTTCGTTGCAAACAGCAGCTAGTACGTGTTCGATCGTTGCATGCACGACGCAAACATGGCCATGTCGTCGCGAAGCTTAGGCGCCCTAGCCGCCTTCGTCTTCCTCTGCTCAGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAATGCCTCTCGGCGAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACGTCGGTGCTGGACGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTCTGGATCATCACGCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGGAACGGCGTCCGCCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTCGGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGACGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGCCATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGTCGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGCCGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTCCATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATCGTGCTCTCCTGGAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTCCCGGTGACCGTGAGCCAGGGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCGCCGTCGCTCCCCGACGACCTGTTCATCCGCGTGCTCGTCCAGGGCCAGAGGGCCAGCTTCCAGTCCCTCTACCTCGGCACCTGCGACGCGCTGCTGCCGGTGATGCGCAGCCGCTTCCCGGAGCTCGGCATGAACCGGTCGGACTGCAGGGAGATGACTTGGATCCAGTCCGTCCCCTACATCTACCTCGGCAGCAGCGCCACCGTGGAGGACATCCTGAACCGGACCATCGCCATGGACACCTCCAACAAGGCCACCTCCGACTACGTCCGGCAAGCCATCGGCAGGGACACGTGGAGCGCCATCTTCGGGTGGCTCGCGCGGCCCAACGCCGGGCTGATGATCCTGGACCCGTACGGCGGGCAGATCGGCAGCGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTCTACAACATCCAGTACATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAGAGGGCGTGGATCAGGGACTTCTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGGGAGGCGTACGCCAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGTCAGCAGCTACGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAGCGGCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGCATCCCGCCACTTGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTCCGTCACATAAAAAATAATCTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAAATTAGTTTTTTATGAGATGGAGGGAGTAGTGCATGGCAGACAGTCAAACTAATAGCTGTAAAAATCTTTGGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACGCCGTCTATATGTTTGAAAATTCATCACTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTGCGGATCGATGTACTATCTTTCACATAAGCTGAGCTTATTGCGTGCTC]

[+] EMBL AK109673             [GCATCGTTCGTTCGTTGCAAACAGCAGCTAGTACGTGTTCGATCGTTGCATGCACGACGCAAACATGGCCATGTCGTCGCGAAGCTTAGGCGCCCTAGCCGCCTTCGTCTTCCTCTGCTCAGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAATGCCTCTCGGCGAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACGTCGGTGCTGGACGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTCTGGATCATCACGCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGGAACGGCGTCCGCCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTCGGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGACGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGCCATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGTCGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGCCGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTCCATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATCGTGCTCTCCTGGAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTCCCGGTGACCGTGAGCCAGGGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCGCCGTCGCTCCCCGACGACCTGTTCATCCGCGTGCTCGTCCAGGGCCAGAGGGCCAGCTTCCAGTCCCTCTACCTCGGCACCTGCGACGCGCTGCTGCCGGTGATGCGCAGCCGCTTCCCGGAGCTCGGCATGAACCGGTCGGACTGCAGGGAGATGACTTGGATCCAGTCCGTCCCCTACATCTACCTCGGCAGCAGCGCCACCGTGGAGGACATCCTGAACCGGACCATCGCCATGGACACCTCCAACAAGGCCACCTCCGACTACGTCCGGCAAGCCATCGGCAGGGACACGTGGAGCGCCATCTTCGGGTGGCTCGCGCGGCCCAACGCCGGGCTGATGATCCTGGACCCGTACGGCGGGCAGATCGGCAGCGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTCTACAACATCCAGTACATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAGAGGGCGTGGATCAGGGACTTCTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGGGAGGCGTACGCCAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGTCAGCAGCTACGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAGCGGCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGCATCCCGCCACTTGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTCCGTCACATAAAAAATAATCTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAAATTAGTTTTTTATGAGATGGAGGGAGTAGTGCATGGCAGACAGTCAAACTAATAGCTGTAAAAATCTTTGGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACGCCGTCTATATGTTTGAAAATTCATCACTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTGCGGATCGATGTACTATCTTTCACATAAGCTGAGCTTATTGCGTGCTC]
[+] EMBL CB642342             [              TTGCACACAGCAGCTAGTACGTGTTCGATCGTTGCATGCACGACGCAAACATGGCCATGTCGTCGCGAAGCTTAGGCGCCCTAGCCGCCTTCGTCTTCCTCTGCTCAGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAATGCCTCTCGGCGAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACGTCGGTGCTGGACGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTCTGGATCATCACGCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGGAACGGCGTCCGCCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTCGGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGACGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGCCATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGTCGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGCCGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTCCATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB675385             [                                                                                 AAGCTTAGGCGCCCTAGCCGCCTTCGTCTTCCTCTGCTCAGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAATGCCTCTCGGCGAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACGTCGGTGCTGGACGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTCTGGATCATCACGCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGGAACGGCGTCCGCCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTCGGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGACGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGCCATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGTCGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGCCGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTCCATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATCGTGCTCTCCTGGAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTCCCGGTGACCGTGAGCCAGGGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BI807863             [                                                                                                                                                                                                                                                                                                                                                                     CCGCCTCCACATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTCGGAGCGGCCGGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGACGCGGCGTCCGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGCCATCGGGAAGGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGTCGGCGGCCACTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGCCGACAACGTCGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTCCATGGGCAGCGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATCGTGCTCTCCTGGAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTCCCGGTGACCGTGAGCCA GGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCGCCGTCGCTCCCCGACGAACTGTTCATCCGCGTGCTCGTCCAGG  CAGAGG  CAGCTTCCAGT CCTCTA CTCGG AACTG GACGCGCTG TG CGGTGATGCGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB675386             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCAGGGACACGTGGAGCGCCATCTTCGGGTGGCTCGCGCGGCCCAACGCCGGGCTGATGATCCTGGACCCGTACGGCGGGCAGATCGGCAGCGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTCTACAACATCCAGTACATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAGAGGGCGTGGATCAGGGACTTCTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGGGAGGCGTACGCCAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGTCAGCAGCTACGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAGCGGCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGCATCCCGCCACTTGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTCCGTCACATAAAAAATAATCTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAAATTAGTTTTTTATGAGATGGAGGGAGTAGTGCATGGCAGACAGTCAAACTAATAGCTGTAAAAATCTTTGGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACGCCGTCTATATGTTTGAAAATTCATCACTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTGCGGATCGATGTACTATCTTT                           ]
[-] EMBL CB642343             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TACGGCGGGCAGATCGGCAGCGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTTTACAACATCCAGTACATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAGAGGGCGTGGATCAGGGACTTTTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGGGAGGCGTACGCCAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGTCAGCAGTTACGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAGCGGCTCGCCATGGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGCATCCCGCCACTTGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTCCGTCACATAAAAAATAATTTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAAATTAGTTTTTTATGAGATGGAGGGAGTAGTGCATGGCAGCCAGTCAAACTAATAGCTGTAAAAATCTTTGGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACCCCGTCTATATGTTTGAAAATTCATCCCTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTAGGGATCGATGTA                                   ]


>consensus_8899#0 GCATCGTTCGTTCGTTGCAAACAGCAGCTAGTACGTGTTCGATCGTTGCATGCACGACGC AAACATGGCCATGTCGTCGCGAAGCTTAGGCGCCCTAGCCGCCTTCGTCTTCCTCTGCTC AGCTGCCTCCATGTCGTCCTCCATGGCCGCCACGGACAGCTTCCTCCAATGCCTCTCGGC GAGCATACCCAGCCAGCTCCTGTACACGCAGAGCTCGCCGTCGTACACGTCGGTGCTGGA CGCCGGCATCCGGAACCCTAAGTTCCTGACGAACACCACGCGGCCGGTCTGGATCATCAC GCCGACGAACGCCTCCCACGTCCAGGCCGCCGTGCTCTGCGGCCGCCGGAACGGCGTCCG CCTCCGCATCCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACAGGTCGGAGCGGCC GGAGACGTTCGCCGTGCTCGACCTCGTCAACATCCGCGCCGTCCGCGTCGACGCGGCGTC CGCCACCGCGTGGGTGGACTCCGGCGCGACGCTCGGGGAGATGTACTACGCCATCGGGAA GGCCGGCGGCCGGATCGCGTTCCCGGCCGGCCTGTGTCCGACCGTCGGCGTCGGCGGCCA CTTCAGCGGCGGCGGCTTCGGCATGCTGCTCCGCAAGTACGGCCTCGCCGCCGACAACGT CGTCGACGCCGTCCTCGTGGACGCCAAGGGCAGGCTCCTCGACAAGAACTCCATGGGCAG CGACGTCTTCTGGGCGCTCCGCGGCGGCGCCGGCGAGAGCTTCGGGATCGTGCTCTCCTG GAAGGTGAAGCTCGTGGCCGTGCCGCCGACCGTCACGGTGTTCAACGTCCCGGTGACCGT GAGCCAGGGCGCCATCGACGTCGTCACGAGGTGGCAGGCCGTCGCGCCGTCGCTCCCCGA CGACCTGTTCATCCGCGTGCTCGTCCAGGGCCAGAGGGCCAGCTTCCAGTCCCTCTACCT CGGCACCTGCGACGCGCTGCTGCCGGTGATGCGCAGCCGCTTCCCGGAGCTCGGCATGAA CCGGTCGGACTGCAGGGAGATGACTTGGATCCAGTCCGTCCCCTACATCTACCTCGGCAG CAGCGCCACCGTGGAGGACATCCTGAACCGGACCATCGCCATGGACACCTCCAACAAGGC CACCTCCGACTACGTCCGGCAAGCCATCGGCAGGGACACGTGGAGCGCCATCTTCGGGTG GCTCGCGCGGCCCAACGCCGGGCTGATGATCCTGGACCCGTACGGCGGGCAGATCGGCAG CGTGGCGGAGGCGGCGACGCCGTTCCCGCACCGCGGCGGCGTGCTCTACAACATCCAGTA CATGAACTTCTGGAGCGCGGCGGGCGGAGGCGGCGGCGGCGCGGCGCAGAGGGCGTGGAT CAGGGACTTCTACGCGTTCATGGCGCCGTTCGTGAGCAAGGACCCGAGGGAGGCGTACGC CAACTACAGGGACCTGGACCTCGGCGAGAACGTGGTCGGCGCCGGCGGCGTCAGCAGCTA CGACGCCGGCAAGGTGTGGGGGGAGAAGTACTTCAGGGGGAACTACCAGCGGCTCGCCAT GGCCAAGGCGCAGATCGACGCCGACGACTACTTCAGGAACGAGCAGAGCATCCCGCCACT TGTCGCCGGAAAATGACGAGCCAATTCAAATGTAGCATGGCCTACTCCCTCCGTCACATA AAAAATAATCTAGTGCCGGATATAATTAGGAAGTATCAGATTTAATACTAAATTAGTTTT TTATGAGATGGAGGGAGTAGTGCATGGCAGACAGTCAAACTAATAGCTGTAAAAATCTTT GGTCATGTGTAAAGATGCGTGGTGTATAGGGTAGCTACGCCGTCTATATGTTTGAAAATT CATCACTGTACTTATCTTTTTTTTCTTCCAATTGTATTTTGTGGTGCGGATCGATGTACT ATCTTTCACATAAGCTGAGCTTATTGCGTGCTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)