These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2059 fasta sequence [CTCTAGGCTCTGCCACCAGTCCGCCCTTCCACTCCTCGTCCTTGCGCTTCTTCGGTTCTTCCTCTCCGAGGTCCGAGCTGCCCAAAAGTTTCATCGATCCGTTCTCTGCCACAGCCGCTGGATTCTAGCTTTCATTTGCTTGCTCTGATCCGTTGGATTGGATTGCCTCGTTTTGAATAGTTCAGAGAAACCTTGCTCTGACGGAGTATTGAGGCTGGCAGCAGGTCCAAGAAATGGGGAGGAAATGGCACCATGTCGCCGCGGCGCTGGCCGTGGCCTGCGCCGCGACGGCGGCCGCCACCGTCGCCGCCGCGGCCGACAGGGGGCTTTGGTCCGCCGCCGCCGCCGCCGTGGCGGAGGAGGGGGAGGAAGCGAGCCACCTGCGCAAGGTGGCCAACTTTTTGTGGCGGAGCGGCGGCGAGAACTCCTACCACCACGTGTGGCCGCCAATGGAATTTGGATGGCAAATTGTGCTGGGGTCATTTGTCGGATTCATTGGAGCGGCGTTTGGGAGTATAGGCGGTGTAGGCGGCGGTGGGTTCTTCATGCCGATGCTGACCTTGATCATTGGGTTCGACGCAAAGTCATCCGTGGCGATATCAAAATGTATGATAATGGGAGCCGCTGTGTCGACTGTGTACTGCAACCTTAAGCGGAAACACCCAACTTTGGACATGCCAGTGATTGACTATGATCTAGCCCTTCTTATCCAGCCGATGCTCATGCTAGGAATTAGTATCGGTGTCATTTTCAATGTGATATTCCCTGATTGGCTGGTCACAGTTCTCTTGATCATCCTTTTCCTAAGCACTTCAACTAAAGCTTTTCTGAAGGGTATCGAGACATGGAAGAAAGAGACAATAATAAAAAGGGAGGCAGAAAAGCGATCAGAGCAGACAAGTGAAGAACTAGAGTATAGACCAGTTCCTGCATCTGAGTCAAAACCCCCTTCAGATGAAGCGGTATCTATTTTGCATAATGTTTACTGGAAGGAATTTGGACTTCTTGCCTTTGTTTGGATAGCATTCCTCGCACTTCAGGTTACTAAGAATTACATGCCAACTTGCTCCACGTGGTACTGGGTTTTGAACTTATTGCAGATCCCAGTGTCAGTTGGGGTGACCATGTATGAAGGACTAGGATTGATGCAGGGGAGGAGGGTCATATCATCAAATGGAAATGAGCAGACCAACCTAAAATTTCACCAGCTACTTATGTACTGCTTTTTTGGAATAACTGCTGGAATTGTTGCCGGTCTGCTTGGTGTTGGGGGCGGCTCAATCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCCACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTTGNTNAAAAAAAAAAAAAAAAA] [+] EMBL AK120787 [CTCTAGGCTCTGCCACCAGTCCGCCCTTCCACTCCTCGTCCTTGCGCTTCTTCGGTTCTTCCTCTCCGAGGTCCGAGCTGCCCAAAAGTTTCATCGATCCGTTCTCTGCCACAGCCGCTGGATTCTAGCTTTCATTTGCTTGCTCTGATCCGTTGGATTGGATTGCCTCGTTTTGAATAGTTCAGAGAAACCTTGCTCTGACGGAGTATTGAGGCTGGCAGCAGGTCCAAGAAATGGGGAGGAAATGGCACCATGTCGCCGCGGCGCTGGCCGTGGCCTGCGCCGCGACGGCGGCCGCCACCGTCGCCGCCGCGGCCGACAGGGGGCTTTGGTCCGCCGCCGCCGCCGCCGTGGCGGAGGAGGGGGAGGAAGCGAGCCACCTGCGCAAGGTGGCCAACTTTTTGTGGCGGAGCGGCGGCGAGAACTCCTACCACCACGTGTGGCCGCCAATGGAATTTGGATGGCAAATTGTGCTGGGGTCATTTGTCGGATTCATTGGAGCGGCGTTTGGGAGTATAGGCGGTGTAGGCGGCGGTGGGTTCTTCATGCCGATGCTGACCTTGATCATTGGGTTCGACGCAAAGTCATCCGTGGCGATATCAAAATGTATGATAATGGGAGCCGCTGTGTCGACTGTGTACTGCAACCTTAAGCGGAAACACCCAACTTTGGACATGCCAGTGATTGACTATGATCTAGCCCTTCTTATCCAGCCGATGCTCATGCTAGGAATTAGTATCGGTGTCATTTTCAATGTGATATTCCCTGATTGGCTGGTCACAGTTCTCTTGATCATCCTTTTCCTAAGCACTTCAACTAAAGCTTTTCTGAAGGGTATCGAGACATGGAAGAAAGAGACAATAATAAAAAGGGAGGCAGAAAAGCGATCAGAGCAGACAAGTGAAGAACTAGAGTATAGACCAGTTCCTGCATCTGAGTCAAAACCCCCTTCAGATGAAGCGGTATCTATTTTGCATAATGTTTACTGGAAGGAATTTGGACTTCTTGCCTTTGTTTGGATAGCATTCCTCGCACTTCAGGTTACTAAGAATTACATGCCAACTTGCTCCACGTGGTACTGGGTTTTGAACTTATTGCAGATCCCAGTGTCAGTTGGGGTGACCATGTATGAAGGACTAGGATTGATGCAGGGGAGGAGGGTCATATCATCAAATGGAAATGAGCAGACCAACCTAAAATTTCACCAGCTACTTATGTACTGCTTTTTTGGAATAACTGCTGGAATTGTTGCCGGTCTGCTTGGTGTTGGGGGCGGCTCAATCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCCACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGA ] [+] EMBL CA999075 [ TCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCCACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACT ] [+] EMBL CA999024 [ GCTTCCATGTCTGCTGTTGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGCATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCGTGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGGTGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGAAGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGCAGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAGATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATAGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAA ] [+] EMBL AU032590 [ TTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCANATTGCAGCATGGAGANTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGATNGTNGCNCGGNGGAGANNAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATTTTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATAGGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTTGNTNAAAAAAAAAAAAAAAAA] consensusID : consensus_8900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence [ACTAGTAGTTTTNTTAGGTGTTCAGACATGTGAACTNTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATAACAAGAGCAGGTCCAGTATATTGTTCATTTTTACTGGTTTCAGTGTAGTGAATTTATATTTGTGCCGGCTAATTTGACCTGAAAATATAAGGGATCGAA-CGTTGCGAATGTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAAGAAGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTATTTCCACTCCCTGTAATGTCAAAATTTTCATTTATTTTGGACATATATTGGTCCAATTAAGTTGTTTCCCCCTTTTTTCCACTCCCTGTAATGTCAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTATGTTTCCT] [+] EMBL C98483 [ACTAGTAGTTTTNTTAGGTGTTCAGACATGTGAACTNTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATAACAAGAGCAGGTCCAGTATATTGTTCATTTTTACTGGTTTCAGTGTAGTGAATTTATATTTGTGCCGGCTAATTTGACCTGAAAATATAAGGGATCGAA CGTTGCGAATGTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAAGAAGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTATTTCCACTCCCTGTAATGTCAAAATTTTCATTTATTTTGGACATATATTGGTCCAATTAAGTTGTTTCCCCCTTTTTTCCACTCCCTGTAATGTCAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTATGTTTCC ] [-] EMBL C71770 [ GGCTAANTTGACCTGAAAATATAAGGGATCGAACCGTTGCGAATGTGCTTATCTTTGAAATGGAACTTGATTACGATGGTAAAGTGATAGCTGAGCTATGGATTGCTAACAANAAGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGATCCCCGGCAACGGCGTTTCTCATGTTTTTTATTTCCACTCCCTGTAATGTNAAAATTTTCANTTATTTTGGACATATATTGGTCCAANTAAGTTGTTTCCCCCTTTTTTCCACTCCCTGTAATGTNAAAATATTCATTTATTTTGGACATATATTGGTCCAGTTAAGTTGTTTCCCCTCCCTGTAACGTATGTTTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8900#0 CTCTAGGCTCTGCCACCAGTCCGCCCTTCCACTCCTCGTCCTTGCGCTTCTTCGGTTCTT 60 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 CCTCTCCGAGGTCCGAGCTGCCCAAAAGTTTCATCGATCCGTTCTCTGCCACAGCCGCTG 120 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 GATTCTAGCTTTCATTTGCTTGCTCTGATCCGTTGGATTGGATTGCCTCGTTTTGAATAG 180 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 TTCAGAGAAACCTTGCTCTGACGGAGTATTGAGGCTGGCAGCAGGTCCAAGAAATGGGGA 240 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 GGAAATGGCACCATGTCGCCGCGGCGCTGGCCGTGGCCTGCGCCGCGACGGCGGCCGCCA 300 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 CCGTCGCCGCCGCGGCCGACAGGGGGCTTTGGTCCGCCGCCGCCGCCGCCGTGGCGGAGG 360 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AGGGGGAGGAAGCGAGCCACCTGCGCAAGGTGGCCAACTTTTTGTGGCGGAGCGGCGGCG 420 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AGAACTCCTACCACCACGTGTGGCCGCCAATGGAATTTGGATGGCAAATTGTGCTGGGGT 480 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 CATTTGTCGGATTCATTGGAGCGGCGTTTGGGAGTATAGGCGGTGTAGGCGGCGGTGGGT 540 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 TCTTCATGCCGATGCTGACCTTGATCATTGGGTTCGACGCAAAGTCATCCGTGGCGATAT 600 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 CAAAATGTATGATAATGGGAGCCGCTGTGTCGACTGTGTACTGCAACCTTAAGCGGAAAC 660 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 ACCCAACTTTGGACATGCCAGTGATTGACTATGATCTAGCCCTTCTTATCCAGCCGATGC 720 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 TCATGCTAGGAATTAGTATCGGTGTCATTTTCAATGTGATATTCCCTGATTGGCTGGTCA 780 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 CAGTTCTCTTGATCATCCTTTTCCTAAGCACTTCAACTAAAGCTTTTCTGAAGGGTATCG 840 consensus_8900#1 -----------------------------------ACTAGTAGTTTTNTTA--GGTGTTC 23 **** **** * * *** * consensus_8900#0 AGACATG-GAAGAAAGAGACAATAATAAAAAGGGAGGCAGAAAAGCGATCAGAGCAGACA 899 consensus_8900#1 AGACATGTGAACTNTCCTACAGCAAGTAGTAGTACGTCCATAAAGCTGTGAACTGTGAAG 83 ******* *** *** ** * ** * * ***** * * ** consensus_8900#0 AGTGAAGAACTAGAGTATAGACCAGTTCCTGCATCTGAGTCAAAACCCCCTTCAGATGAA 959 consensus_8900#1 AGAGAATAACAAGAG-------CAGGTCCAGTATAT------------------------ 112 ** *** *** **** *** *** * ** * consensus_8900#0 GCGGTATCTATTTTGCATAATGTTTACTGGAAGGAATTTGGACTTCTTGCCTTTGTTTGG 1019 consensus_8900#1 ----TGTTCATTTTTACTGGT-TTCAGTGTAGTGAATTTATATTTGTGCCGGCTAATTTG 167 * * ***** * * ** * ** * ****** * ** * * * ** * consensus_8900#0 ATAGCATTCCTCGCACTTCAGGTTACTAAGAATTACATGCCAACTTGCTCCACGTGGTAC 1079 consensus_8900#1 A-------CCTGAAAATATAAGGGATCGAACGTT----GCGAATGTGCTTATCTTTGAAA 216 * *** * * * * * * ** ** ** **** * * * * consensus_8900#0 TGGGTTTTGAACTTATTGCAGATCCCAGTGTCAGTTGGGGTGACCATGTATGAAGGACTA 1139 consensus_8900#1 TGGAACTTGATTACGATGGTAA----AGTGATAGCTGAGCTATGGATTGCTAACAAG--A 270 *** **** ** * **** ** ** * * ** * * * consensus_8900#0 GGATTGATGCAGGGGAGGAGGGTCATATCATCAAATGGAA-ATGAGCAGACCAACCTAAA 1198 consensus_8900#1 AGGTCGTTGTAGTATAGTGGTGA-GTATTCCCGCCTGTCACGCCGGTGTCCCGGGTTCGA 329 * * * ** ** ** * * *** * ** * * ** * * consensus_8900#0 ATTTCACCAGCTACTTATGTACTGCTTTTTTGGAATAACTGCTGGAATTGTTGCCGGTCT 1258 consensus_8900#1 TCCCCGGCAACGGCGTTTCTCATG-TTTTTTATTTCCACTCCCTGTAATGTCAAAATTTT 388 * ** * * * * * ** ****** *** * * * *** * * consensus_8900#0 GCTTGGTGTTGGGGGCGGCTCAATCCTAGGACCCATGTTCTTGGACCTTGGTGTCCCTCC 1318 consensus_8900#1 CATTTATTTTGGACATATATTGGTCCAA----TTAAGTTGTTTCCCCCT----TTTTTCC 440 ** * **** * *** * * *** ** ** * * *** consensus_8900#0 ACAAGTCGCAAGTGCCACTGCCACCTTCTCAATGATGTTCTCGGCTTCCATGTCTGCTGT 1378 consensus_8900#1 ACTCCCTGTAA-TGTCA-----AAATATTCATT--TATTTTGGACATATATTGGTCCAGT 492 ** * ** ** ** * * *** * * ** * * * * ** * * ** consensus_8900#0 TGAATACTACTTCTTGGACCGATTCCCTGTGCCATATGCTCTTTACTTGACCGTTGTGGC 1438 consensus_8900#1 TAAGT--TGTTTCCC-------CTCCCTGTAACGTATGTTTCCT---------------- 527 * * * * *** ******* * **** * * consensus_8900#0 ATTCTTTTCTGCGATTGTCGGCCAGCGAATGGTAAGGAAGGTGATCAATTGGTTAGGGCG 1498 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 TGCATCGATCATTATCTTCACATTGTCCATCATGATCTTCCTCAGTACAATCCCTCTAGG 1558 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 TGGAATCGGTATCGTGAACTGGATTGGCAAGATTGAGCGACATGAGTACATGGGATTCGA 1618 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AGACATATGCAAGTTTGATGCATAGGAGGAAGGTAAACATGGGCACTATATATACTGTGC 1678 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AGTTTCAGCCAATGGAACACATATATCATCATATTTGCCTGGTCAGATTGCAGCATGGAG 1738 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 ATTGTTTTTTCGCCCTGTAAATTCAAGACAGTTGTATATTGATATTGTCCCTCAATTGAT 1798 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AGTAGCTCGGAGGAGACAAATTTACTGTACTACTCACTCCATCCTATAATATAAGGGATT 1858 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 TTAAATAGATATGACATATCTTAGTACAATAAATCTAAACATCCACCCAAAATCCCTATA 1918 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 GGACGGGACTAGTAGTTTTTTTAGGTGTTCAGACATGTGAACTCTCCTACAGCAAGTAGT 1978 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 AGTACGTCCATAAAGCTGTGAACTGTGAAGAGAGAATNACAAGAGCNGGTCCNNTNTNTT 2038 consensus_8900#1 ------------------------------------------------------------ consensus_8900#0 GNTNAAAAAAAAAAAAAAAAA 2059 consensus_8900#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||