These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1737 fasta sequence [CATGTCCCGGCCTCCCGGGCGACACAGAGAAGAAAAAACGAAACAGCCGAGATGGAGAACGCACCGGCCACCACCACCT-CCTCCACCCAAGACGGCGGCGGCGGCGCCGGCGGCCATGTCTTCCTCCTCGCTTTCCCCGAGGCGCAAGGCCACGTCAACCCGATCCTGCAGTTCGGCCGCCACCTCGCGGCGCACCACGGCTTCCTCCCCACGCTCGTCACCACCCGCCACGTTCTCTCCACCGTCCCGCCCCCTCTCGCCCCCTTCCGCGTCGCCGCCATCTCCGACGGCTTCGACTCCGGCGGCATGGCGGCCTGCGGGGACGCCAGGGAGTACACCCGGCGGCTGGCGGATGTGGGCTCGGAGACCCTGGGTGTCCTCCTCCGCTCCGAGGCCGCCGCGGGGAGGCCGCCCCGCGTGCTGGTGTACGACCCGCACCTCCCGTGGGCGGGGCGCGTGGCGCGCGGCGCTGGGGTGCCAGCCGCCGCGTTCTTCTCGCAGCCGTGCGCCGTGGACGTCATCTACGGGGAGGTCTGGGCGGGGCGCGTTGGGTTGCCCGTCGTGGACGGGGGCGCGCTCCGGGGGTTGCTGAGCGTGGAGCTCGGGCCGGAGGACGTGCCGTCGTTCGTGAAGGCGCCGGAGTCGTACCCGCCGTTCCTGGAGGCGGTGCTGGGCCAGTTCGACGGGCTGGAGGACGCCGACGACGTGCTCGTCAATTCTTTCCAAGAATTGGAGCCGAAGGAGGCAGATTACTTGGCATCAGCATGGCGTTTTAAGACGATTGGTCCGACCGTACCATCCTTCTACTTGGATGACGATCGCTTACAACCAAACAAGAACTATGGGTTCAACATTTCTGACAGCACTTCACCTTGCTTGGCGTGGCTAGATAATCAGCCCCCTTGCTCTGTTGTCTATGCTTCCTATGGGACTGTTGCTGATCTTGACCCAACTCAGTTAGATGAGCTGGGCAATGGATTTTGCAATTCCGGTAAACCGTTCCTTTGGGTCGTGAGGTCCTGTGATGAACACAAGCTATCAGAAGAACTCCGTGACAAGTGCAAGGAGAGGGGCCTAATCGTTTCTTGGTGTCCCCAGCTTGAGGTCTTATCTCACAAAGCCACAGGCTGTTTCTTAACTCACTGTGGATGGAACTCAACAACAGAAGCAATTGTTACTGGCGTTCCACTGTTAGCGATGCCTCAGTGGACAGACCAACCAACTACAGCGAAGTACATTGAAAGTGCATGGGGAAATGGTGTACGCGTACATCGGGACAAGGAAGGCATGGTGAGAAAAGAAGAGGTGGAGAGATGCATCAGAGAGGTTCTAG-AGAGTGAGAGGAAGGCAGAGTACAGGA-AAAA-TGCT-AATAG-GTGGATGAAGAAAGCTAAGGAAG-CCATGAAGAAAGGAGGGA-GCTCGAATAAGAATATTGCTGAGTTT-GCCTCGAAGTACGCTTCATATT-GACATGGAATAGTTTTCAT-CCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCT-CCTATGGAATAGTTTTCATCCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATGGTA-TTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATTATAGTTTGCTCAACGAT-ATTTGGACATTTAAAGCAATTACTTTGTCTTCCC] [+] EMBL AK105967 [CATGTCCCGGCCTCCCGGGCGACACAGAGAAGAAAAAACGAAACAGCCGAGATGGAGAACGCACCGGCCACCACCACCT CCTCCACCCAAGACGGCGGCGGCGGCGCCGGCGGCCATGTCTTCCTCCTCGCTTTCCCCGAGGCGCAAGGCCACGTCAACCCGATCCTGCAGTTCGGCCGCCACCTCGCGGCGCACCACGGCTTCCTCCCCACGCTCGTCACCACCCGCCACGTTCTCTCCACCGTCCCGCCCCCTCTCGCCCCCTTCCGCGTCGCCGCCATCTCCGACGGCTTCGACTCCGGCGGCATGGCGGCCTGCGGGGACGCCAGGGAGTACACCCGGCGGCTGGCGGATGTGGGCTCGGAGACCCTGGGTGTCCTCCTCCGCTCCGAGGCCGCCGCTGGGAGGCCGCCCCGCGTGCTGGTGTACGACCCGCACCTCCCGTGGGCGGGGCGCGTGGCGCGCGGCGCTGGGGTGCCAGCCGCCGCGTTCTTCTCGCAGCCGTGCGCCGTGGACGTCATCTACGGGGAGGTCTGGGCGGGGCGCGTTGGGTTGCCCGTCGTGGACGGGGGCGCGCTCCGGGGGTTGCTGAGCGTGGAGCTCGGGCCGGAGGACGTGCCGTCGTTCGTGAAGGCGCCGGAGTCGTACCCGCCGTTCCTGGAGGCGGTGCTGGGCCAGTTCGACGGGCTGGAGGACGCCGACGACGTGCTCGTCAATTCTTTCCAAGAATTGGAGCCGAAGGAGGCAGATTACTTGGCATCAGCATGGCGTTTTAAGACGATTGGTCCGACCGTACCATCCTTCTACTTGGATGACGATCGCTTACAACCAAACAAGAACTATGGGTTCAACATTTCTGACAGCACTTCACCTTGCTTGGCGTGGCTAGATAATCAGCCCCCTTGCTCTGTTGTCTATGCTTCCTATGGGACTGTTGCTGATCTTGACCCAACTCAGTTAGATGAGCTGGGCAATGGATTTTGCAATTCCGGTAAACCGTTCCTTTGGGTCGTGAGGTCCTGTGATGAACACAAGCTATCAGAAGAACTCCGTGACAAGTGCAAGGAGAGGGGCCTAATCGTTTCTTGGTGTCCCCAGCTTGAGGTCTTATCTCACAAAGCCACAGGCTGTTTCTTAACTCACTGTGGATGGAACTCAACAACAGAAGCAATTGTTACTGGCGTTCCACTGTTAGCGATGCCTCAGTGGACAGACCAACCAACTACAGCGAAGTACATTGAAAGTGCATGGGGAAATGGTGTACGCGTACATCGGGACAAGGAAGGCATGGTGAGAAAAGAAGAGGTGGAGAGATGCATCAGAGAGGTTCTAG AGAGTGAGAGGAAGGCAGAGTACAGGA AAAA TGCT AATAG GTGGAT AAGAAAGCTAAGGAAG CCATGAAGAAAGGAGGGA GCTCGAATAAGAATATTGCTGAGTTT GCCTCGAAGTACGCTTCATATT GACATGGAATAGTTTTCAT CCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCT CCTATGGAATAGTTTTCATCCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCTCCT ] [+] EMBL AK103242 [ AAAAACGAAACAGCCGAGATGGAGAACGCACCGGCCACCACCACCT CCTCCACCCAAGACGGCGGCGGCGGCGCCGGCGGCCATGTCTTCCTCCTCGCTTTCCCCGAGGCGCAAGGCCACGTCAACCCGATCCTGCAGTTCGGCCGCCACCTAGCGGCGCACCACGGCTTCCTCCCCACGCTCGTCACCACCCGCCACGTTCTCTCCACCGTCCCGCCCCCTCTCGCCCCCTTCCGCGTCGCCGCCATCTCCGACGGCTTCGACTCCGGCGGCATGGCGGCCTGCGGGGACGCCAGGGAGTACACCCGGCGGCTGGCGGATGTGGGCTCGGAGACCCTGGGTGTCCTCCTCCGCTCCGAGGCCGCCGCGGGGAGGCCGCCCCGCGTGCTGGTGTACGACCCGCACCTCCCGTGGGCGGGGCGCGTGGCGCGCGGCGCTGGGGTGCCAGCCGCCGCGTTCTTCTCGCAGCCGTGCGCCGTGGACGTCATCTACGGGGAGGTCTGGGCGGGGCGCGTTGGGTTGCCCGTCGTGGACGGGGGCGCGCTCCGGGGGTTGCTGAGCGTGGAGCTCGGGCCGGAGGACGTGCCGTCGTTCGTGAAGGCGCCGGAGTCGTACCCGCCGTTCCTGGAGGCGGTGCTGGGCCAGTTCGACGGGCTGGAGGACGCCGACGACGTGCTCGTCAATTCTTTCCAAGAATTGGAGCCGAAGGAGGCAGATTACTTGGCATCAGCATGGCGTTTTAAGACGATTGGTCCGACCGTACCATCCTTCTACTTGGATGACGATCGCTTACAACCAAACAAGAACTATGGGTTCAACATTTCTGACAGCACTTCACCTTGCTTGGCGTGGCTAGATAATCAGCCCCCTTGCTCTGTTGTCTATGCTTCCTATGGGACTGTTGCTGATCTTGACCCAACTCAGTTAGATGAGCTGGGCAATGGATTTTGCAATTCCGGTAAACCGTTCCTTTGGGTCGTGAGGTCCTGTGATGAACACAAGCTATCAGAAGAACTCCGTGACAAGTGCAAGGAGAGGGGCCTAATCGTTTCTTGGTGTCCCCAGCTTGAGGTCTTATCTCACAAAGCCACAGGCTGTTTCTTAACTCACTGTGGATGGAACTCAACAACAGAAGCAATTGTTACTGGCGTTCCACTGTTAGCGATGCCTCAGTGGACAGACCAACCAACTACAGCGAAGTACATTGAAAGTGCATGGGGAAATGGTGTACGCGTACATCGGGACAAGGAAGGCATGGTGAGAAAAGAAGAGGTGGAGAGATGCATCAGAGAGGTTCTAG AGAGTGAGAGGAAGGCAGAGTACAGGA AAAA TGCT AATAG GTGGATGAAGAAAGCTAAGGAAG CCATGAAGAAAGGAGGGA GCTCGAATAAGAATATTGCTGAGTTT GCCTCGAAGTACGCTTCATATT GACATGGAATAGTTTTCAT CCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCT CCTATGGAATAGTTTTCATCCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATGTTA TTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATTATAGTTTGCTCAACGAT ATTTGGA ] [+] EMBL C28196 [ CACCACCACCTGACTCCACCCAAGANGGNGGNGGAGGCG CGGCGGCCATGTCTTCCTCCTCGCTTTCCCCGAGGCGCAAGGCCACGTCAACCCGATCCTGCAGTTCGGCCGCCACCTCGCGGCGCACCACGGCTTCCTCCCCACGCTCGTCACCACCCGCCACGTTCTCTCCACCGTCCCGCCCCCTCTNGCCCCCTTCCGCGTCGCCGCCATCTCCGACGGCTTCGACTCCGGCGGCATGGCGGCCTNCGGGGACG CAGGAAGTACAACCGGCGGCTGGCGGATGTGGGCTCGGAGAACC ] [+] EMBL CB672601 [ CACCACCT CCTCCACCCAAGACGGCGGCGGCGGCGCCGGCGGCCATGTCTTCCTCCTCGCTTTCCCCGAGGCGCAAGGCCACGTCAACCCGATCCTGCAGTTCGGCCGCCACCTCGCGGCGCACCACGGCTTCCTCCCCACGCTCGTCACCACCCGCCACGTTCTCTCCACCGTCCCGCCCCCTCTCGCCCCCTTCCGCGTCGCCGCCATCTCCGACGGCTTCGACTCCGGCGGCATGGCGGCCTGCGGGGACGCCAGGGAGTACACCCGGCGGCTGGCGGATGTGGGCTCGGAGACCCTGGGTGTCCTCCTCCGCTCCGAGGCCGCCGCGGGGAGGCCGCCCCGCGTGCTGGTGTACGACCCGCACCTCCCGTGGGCGGGGCGCGTGGCGCGCGGCGCTGGGGTGCCAGCCGCCGCGTTCTTCTCGCAGCCGTGCGCCGTGGACGTCATCTACGGGGAGGTCTGGGCGGGGCGCGTTGGGTTGCCCGTCGTGGACGGGGGCGCGCTCCGGGGGTTGCTGAGCGTGGAGCTCGGGCCGGAGGACGTGCCGTCGTTCGTGAAGGCGCCGGAGTCGTACCCGCCGTTCCTGGAGGCAGTGCTGGGCCAGTTCGACGGGCTGGAAGACGCCGACGACGTGCTCGTCAA ] [-] EMBL CB672602 [ AATTCCGGTAAACCGTTCCTTTGGGTCGTGAGGTCCTGTGATGAACACAAGCTATCAGAAGAACTCCGTGACAAGTGCAAGGAGAGGGGCCTAATCGTTTCTTGGTGTCCCCAGCTTGAGGTCTTATCTCACAAAGCCACAGGCTGTTTCTTAACTCACTGTGGATGGAACTCAACAACAGAAGCAATTGTTACTGGCGTTCCACTGTTAGCGATGCCTCAGTGGACAGACCAACCAACTACAGCGAAGTACATTGAAAGTGCATGGGGAAATGGTGTACGCGTACATCGGGACAAGGAAGGCATGGTGAGAAAAGAAGAGGTGGAGAGATGCATCAGAGAGGTTCTAG AGAGTGAGAGGAAGGCAGAGTACAGGA AAAA TGCT AATAG GTGGATGAAGAAAGCTAAGGAAG CCATGAAGAAAGGAGGGA GCTCGAATAAGAATATTGCTGAGTTT GCCTCGAAGTACGCTTCATATT GACATGGAATAGTTTTCAT CCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCT CCTATGGAATAGTTTTCATCCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATGGTA TTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATTATAGTTTGCTCAACGAT ATTTGGACATTTAAAGCAATTACTTTGTCTTCCC] [+] EMBL BI806569 [ GAGATGCATCAGAGAGGTTCTAGTAGAGTGAGAGGAAGGCAGAGTACAGGATAAAATTTCTNTATAGTGTGGATGAAGAAAGCTAAGGAAGCCCATGAAGAAAGGAGGGATGCTCGAATAAGAATATT CTGAGTTTGGCCTCGAAGTACGCTTCATATTGGACATGGAATAGTTTTCATGCCAGCNACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCTCCCCCCGGAATAGTTTTCATCCAGCTACCAAGGTATTTTATTTAGATCTCTGGTTATGATTACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATGNTAGTGACAATAATGGAGGGAGAAAGTTTAGTTCTCCTATTATAGTTTGCTCAACGATNCCTTGGACAaaaaaaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||