cluster # 8905

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Oryza sativa
cluster # 8905 cluster # 8905 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8905#0 length = 1623 sequences # 1

consensus_8905#1 length = 1566 sequences # 4
consensus_8905#2 length = 458 sequences # 1

consensusID : consensus_8905#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1623
fasta sequence

                              [AACACTCTCTTCCTATTACCTCTCTCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCGGCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACATATGTGTGTGTGTTTGGTGTGGTTAATTAGTGGTATACTCCCTCCGTACTCGTAAAGGAAATCGTTTTGGAGAGCGACACGGTCTCCAAAACATAACTTTGACTTCTTATTTCTATAAAA]

[+] EMBL AK105732             [AACACTCTCTTCCTATTACCTCTCTCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCGGCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACATATGTGTGTGTGTTTGGTGTGGTTAATTAGTGGTATACTCCCTCCGTACTCGTAAAGGAAATCGTTTTGGAGAGCGACACGGTCTCCAAAACATAACTTTGACTTCTTATTTCTATAAAA]




>consensus_8905#0
AACACTCTCTTCCTATTACCTCTCTCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATT
AAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACT
CTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTC
CCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCG
CTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGG
AAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTG
TGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTC
GCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTC
CTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCG
TCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGC
GCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAAC
GCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATC
TTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACG
GCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGC
GACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATC
CCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTC
GCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGC
CACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAAC
CTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTC
CGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGC
ATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCT
CCGCCGTGAGCGATCGATCATGGCGGCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGT
GACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGG
GGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTT
GTTGTTAAAAAAACTTTCGATTATCATTAATTAAGTTGTGATGTCGCCGTCTCGATGGAT
ACATATGTGTGTGTGTTTGGTGTGGTTAATTAGTGGTATACTCCCTCCGTACTCGTAAAG
GAAATCGTTTTGGAGAGCGACACGGTCTCCAAAACATAACTTTGACTTCTTATTTCTATA
AAA

consensusID : consensus_8905#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1566
fasta sequence

                              [TTCCTCGAGCACTGTTGGCCTACTGGACAGTGCTGAACACTCTCTTCCTATTACCTCTCTCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCGGCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACAAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK109350             [TTCCTCGAGCACTGTTGGCCTACTGGACAGTGCTGAACACTCTCTTCCTATTACCTCTCTCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCGGCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK068135             [                                       CTCTCTTCCTATTACCTCTCTCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGCCGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGCGGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCAAGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCGGCAGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAAT                                                                                               ]
[+] EMBL OSS2186A             [                                                       tactnCATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAATGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCTGCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCANCTTCGCCGTCGNCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK061561             [                                                                                                                                                                                                                                                                                                                                                                                                                  ACACCGGCGTCTACTGCGCGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCGACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACCTCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCTTCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGCTGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCGCCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACGTGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACACCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGCTCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGAAGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCGGCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCCCCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCGGCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAA                                                             ]




>consensus_8905#1
TTCCTCGAGCACTGTTGGCCTACTGGACAGTGCTGAACACTCTCTTCCTATTACCTCTCT
CATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAA
TGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCT
GCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGC
CGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGC
GGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCA
AGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCG
CGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCG
ACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACC
TCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCT
TCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGC
TGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCG
CCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACG
TGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACA
CCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGC
TCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGA
AGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCG
GCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCC
CCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCT
GCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCC
CGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGC
CGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCG
GCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGT
AGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCAT
CCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATC
ATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACAAAAAAAAAAAAAAAAAAAAAGG
CCACAT

consensusID : consensus_8905#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [AGGTCCCCGAGGCCATNTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAANTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCNTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCNCCGTGAGCGATCGATCNTGGCGGCCGGAGTACGTANCGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCNTGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU101946             [AGGTCCCCGAGGCCATNTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAANTACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCNTCCGCGACGACCGGATGAACTGCATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCNCCGTGAGCGATCGATCNTGGCGGCCGGAGTACGTANCGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGTAGAGACTGCAAATCTCCNTGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATCATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8905#2
AGGTCCCCGAGGCCATNTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAANT
ACTTCTGCGACGAGCCGGTGTCCTGCCTCCACGTCCCNTCCGCGACGACCGGATGAACTG
CATCCCGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCC
GCCGCCGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCNCCGTGAGCGATCGATCN
TGGCGGCCGGAGTACGTANCGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGG
TTGGTAGAGACTGCAAATCTCCNTGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCT
ATCATCCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGA
TTATCATTAATTAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8905#1      TTCCTCGAGCACTGTTGGCCTACTGGACAGTGCTGAACACTCTCTTCCTATTACCTCTCT 60
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      -----------------------------------AACACTCTCTTCCTATTACCTCTCT 25
                                                                                  

consensus_8905#1      CATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAA 120
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      CATCCTCTCCATCTCTCTAGTTTCTCTCTCTAATTAAGCATTGCAACAATTCAACCAAAA 85
                                                                                  

consensus_8905#1      TGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCT 180
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TGCAGCTAATTCTTCTTCTCTCAAAGCCAAGAACTCTCCAACTTTTCCCCCTCCTCCTCT 145
                                                                                  

consensus_8905#1      GCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGC 240
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      GCCTCCTTCTCCTTCCATGTCTCTCCCAGCCTCTCCCCTCTCCTTCTCCTTCACCTTCGC 205
                                                                                  

consensus_8905#1      CGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGC 300
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      CGTCGCCTTCGGCGTCGCCGGCGCCGCCGCCATCGCTGCCGCTGTCGCCGTTCAATGAGC 265
                                                                                  

consensus_8905#1      GGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCA 360
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      GGCTGGAGGCGGCGTACGTGGCGTTCCAGGCGTGGAAGCACGCCATCACCGAGGACCCCA 325
                                                                                  

consensus_8905#1      AGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCG 420
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      AGAACCTGACGGAGGATTGGTGCGGGCCGTTCGTGTGCAACTACACCGGCGTCTACTGCG 385
                                                                                  

consensus_8905#1      CGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCG 480
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      CGGCGGCGCCCGACGATCCGCACGTCCTCACCGTCGCCGGCGTCGACCTCAACCACGGCG 445
                                                                                  

consensus_8905#1      ACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACC 540
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      ACATCGCCGGGTGCCTCCCCGACCACCTCGGCCTCCTCGCCGACGTCGCGCTCCTCCACC 505
                                                                                  

consensus_8905#1      TCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCT 600
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TCAACTCCAACCGCTTCCGCGGCACGCTGCCGCCGTCGATGCAGCACATGCGCCTCCTCT 565
                                                                                  

consensus_8905#1      TCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGC 660
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TCGAGCTCGACGTCAGCAACAACCTCCTCGCCGGCGCGTTCCCGGCGTTCCTCACCTCGC 625
                                                                                  

consensus_8905#1      TGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCG 720
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TGCCGGGGCTCAAGTTCCTCGACCTCCGCTTCAACGCCTTCGACGGCGAGCTCCCCGCCG 685
                                                                                  

consensus_8905#1      CCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACG 780
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      CCGTCTTCGGCCGCCGGCTCGGCCTCGACGCCATCTTCGCCAACGACAACCGCTTCAACG 745
                                                                                  

consensus_8905#1      TGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACA 840
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TGTCGCTGTCGTCGGCAAGCCTCACCAACTCGACGGCGTCGGTGATCGTGCTCGCCAACA 805
                                                                                  

consensus_8905#1      CCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGC 900
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      CCCGTCTCGCCGGCTGCCTGCCGCCGTCCATCGGCGACATGGCGGACACGCTGGTGGAGC 865
                                                                                  

consensus_8905#1      TCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGA 960
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TCATCCTCCTCAACACCAGCATCAGCAGCTGCATCCCGCCGGAGATCGGCAAGCTGAAGA 925
                                                                                  

consensus_8905#1      AGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCG 1020
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      AGCTCAGGGTGCTCGACCTCAGCCACAACGAGCTCGCCGGTGAGCTGCCGGCCAGCGTCG 985
                                                                                  

consensus_8905#1      GCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCC 1080
consensus_8905#2      ------------------------------------------------------AGGTCC 6
consensus_8905#0      GCGACATGGAGAGCCTGGAGGTGCTCAACGTCGGCCACAACATGCTCGCCGGCGAGGTCC 1045
                                                                            ******

consensus_8905#1      CCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCT 1140
consensus_8905#2      CCGAGGCCATNTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAANTACTTCT 66
consensus_8905#0      CCGAGGCCATCTGCGAGCTACCCAGGCTGAGGAACCTCACCATCGCCGGCAACTACTTCT 1105
                      ********** ***************************************** *******

consensus_8905#1      GCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCC 1200
consensus_8905#2      GCGACGAGCCGGTGTCCTGCCTCCACGTCCCN-TCCGCGACGACCGGATGAACTGCATCC 125
consensus_8905#0      GCGACGAGCCGGTGTCCTGCCTCCACGTCCCGCTCCGCGACGACCGGATGAACTGCATCC 1165
                      *******************************  ***************************

consensus_8905#1      CGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGC 1260
consensus_8905#2      CGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGC 185
consensus_8905#0      CGGACTGGCCGCACCAGCGCTCGCCGGAGGAGTGCATCGCCTTCGCCCACCGCCCGCCGC 1225
                      ************************************************************

consensus_8905#1      CGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCG 1320
consensus_8905#2      CGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCNCCGTGAGCGATCGATCNTGGCG 245
consensus_8905#0      CGCACTGCGCCGCCGACGGCTGCATCGTCATCCCTCCGCCGTGAGCGATCGATCATGGCG 1285
                      ************************************* **************** *****

consensus_8905#1      GCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGT 1380
consensus_8905#2      GCCGGAGTACGTANCGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGT 305
consensus_8905#0      GCCGGAGTACGTAACGTTGCATGGTCGTCGTTGGTGACGTCATCGTCCTAGTTGGTTGGT 1345
                      ************* **********************************************

consensus_8905#1      AGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCAT 1440
consensus_8905#2      AGAGACTGCAAATCTCCNTGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCAT 365
consensus_8905#0      AGAGACTGCAAATCTCCATGTGGTTTTCTAGGAGGGGGTAGCCAATTAATATTCTATCAT 1405
                      ***************** ******************************************

consensus_8905#1      CCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATC 1500
consensus_8905#2      CCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATC 425
consensus_8905#0      CCATCCATGCATCCAAATTTCAGAATTAAATGGTTGTTGTTAAAAAAACTTTCGATTATC 1465
                      ************************************************************

consensus_8905#1      ATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACAAAAAAAAAAAAAAAAAAAAAGG 1560
consensus_8905#2      ATTAATTAAA-------------------------AAAAAAAAAAAAAAAAAAAAAAA-- 458
consensus_8905#0      ATTAATTAAGTTGTGATGTCGCCGTCTCGATGGATACATATGTGTGTGTGTTTGGTGTGG 1525
                      *********                          * * *                    

consensus_8905#1      CCACAT------------------------------------------------------ 1566
consensus_8905#2      ------------------------------------------------------------
consensus_8905#0      TTAATTAGTGGTATACTCCCTCCGTACTCGTAAAGGAAATCGTTTTGGAGAGCGACACGG 1585
                                                                                  

consensus_8905#1      --------------------------------------
consensus_8905#2      --------------------------------------
consensus_8905#0      TCTCCAAAACATAACTTTGACTTCTTATTTCTATAAAA 1623