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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1403 fasta sequence
[GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGATGAGATAGTAGTTAGTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGTAACTTGCCCTGTGTACTGTGGCTACCAGCTACATGGTGTTTACTCTTTACATTTCGTTGATACTTAGCATTCTTTAGTAGTGGCCTCATCTCTGCTGATTAAATGTGCCTGATTCACGCTCTAACTTAAAACTAGAATGCAAATATACTGGACAGCCAAATAGATTCACCTTTTCATTTTGATATTAGTGCCGCAGCTTGAAAAATATACTAGATGTTATCTTCACAAGTTACAACAGCTAGGATGGTGTATGCTTGTCCTTTTCCTTTCATCCTTTGTATCAGAACATCAGAGGTACTCAATTCTAACTATAGAAAAGTGCTGTAAATAGCTATGTTTTGGCAGGTGGTAACTTAAAATACAGAGATCTTATTGGCCTAAAAATTGTTTAGATTCCAGTAAAACAAGGTCATGAGTGAATACAGAAATTCCTAGTTTTTGTTTTGCACTCTCAGAATTTCTTTGGCTGATGGTGTAAATGGAGTAGATAATTTCAAGCTGGCGGATAAAACAACAGAAATGCTTTAAAAAATAAAACAAGCTCTTATTTATTAGGAACAATTCACTGAGACACTGATTGGCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCATTTAACATTAGTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTGTGCTATAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCATTATGAGGAAAGA]
[+] EMBL AK103800 [GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGATGAGATAGTAGTTAGTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGTAACTTGCCCTGTGTACTGTGGCTACCAGCTACATGGTGTTTACTCTTTACATTTCGTTGATACTTAGCATTCTTTAGTAGTGGCCTCATCTCTGCTGATTAAATGTGCCTGATTCACGCTCTAACTTAAAACTAGAATGCAAATATACTGGACAGCCAAATAGATTCACCTTTTCATTTTGATATTAGTGCCGCAGCTTGAAAAATATACTAGATGTTATCTTCACAAGTTACAACAGCTAGGATGGTGTATGCTTGTCCTTTTCCTTTCATCCTTTGTATCAGAACATCAGAGGTACTCAATTCTAACTATAGAAAAGTGCTGTAAATAGCTATGTTTTGGCAGGTGGTAACTTAAAATACAGAGATCTTATTGGCCTAAAAATTGTTTAGATTCCAGTAAAACAAGGTCATGAGTGAATACAGAAATTCCTAGTTTTTGTTTTGCACTCTCAGAATTTCTTTGGCTGATGGTGTAAATGGAGTAGATAATTTCAAGCTGGCGGATAAAACAACAGAAATGCTTTAAAAAATAAAACAAGCTCTTATTTATTAGGAACAATTCACTGAGACACTGATTGGCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCATTTAACATTAGTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTGTGCTATAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCATTATGAGGAAAGA]
consensusID : consensus_8913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 721 fasta sequence
[GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC-AGGGATC-ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT-TTGGTGCA-GTTGTTGTCCGTAATGATGAGATAGTA-GTTAGTTGCCATAACATGGTT-TTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA-TTAAGAGGCTGGTG-TATGGAGCCAAGGCAGAAGCTGCTATTGCCA-TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCANTATGAGGAAAGAAAATTGNTCACTCGAGACT]
[+] EMBL AK073655 [GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC AGGGATC ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTTGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTACTCTCATTATGAGGAAAGAAAATTG ]
[+] EMBL AK104068 [GAGGCTCGGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC AGGGATC ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTTGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTATACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCGTTCTGCCATTAGTGGACCATAAGCTAT ]
[+] EMBL CA765405 [ CGATCTCAGTTGCTTCAGCATTTGCTGGTCATCAGGAAGCCGTACAAGAC AGGGATC ACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTCGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGAGNTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGNTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGGTACTCTCANTATGANGNAAGAAAATTGNTC ]
[-] EMBL CA762939 [ AGACAAGGGGTC ACAAATTTTTGTCTAAAGCAGTTGAGGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCAT TTGGTGCA GTTGTTGTCCGTAATGATGAGATAGTA GTTAGTTGCCATAACATGGTT TTGGATTACGCTGATCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGA TTAAGAGGCTGGTG TATGGAGCCAAGGCAGAAGCTGCTATTGCCA TTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCAATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACTAATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTCAGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAAATATATGTTTCTCTCAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL BM929224 [ GATCTACGAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGATTGTGGCCATGGAGGTCCATCTTGGTGCACGTTGTTGTCCGTAATGATGAGATAGTACGTTAGTTGCCATAACATGGTTCTTGGATTACACTGAGCCAACTGCGCATGCTGAAGTAACTGCAATAAGAGAGGCTTGCCAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCATCATGTGAACCTTGCCC ATGTGTTTCGGCGCTGTGCATCTATCACGGACTTAAGAGGCTGGTGCTATGGAGCCAAGGCAGAAGCTGCTATTGCCACTTGGATTCGATGACTTCATTGCTGATGCTTTGAGGGGANCTGCTTACTACCAGAAGGCCCACTTGGAGATAAGGCGGGCAGATGGC ATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8913#0 GAGGCTCAGGTTGTGGAATCCAAGGACGGAACGATCTCAGTTGCTTCAGCATTTGCTGGT 60
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 CATCAGGAAGCCGTACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCT 120
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 TACCAAGGAGTAGATTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGAT 180
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 GAGATAGTAGTTAGTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCT 240
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 GAAGTAACTGCAATAAGAGAGGTAACTTGCCCTGTGTACTGTGGCTACCAGCTACATGGT 300
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 GTTTACTCTTTACATTTCGTTGATACTTAGCATTCTTTAGTAGTGGCCTCATCTCTGCTG 360
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 ATTAAATGTGCCTGATTCACGCTCTAACTTAAAACTAGAATGCAAATATACTGGACAGCC 420
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 AAATAGATTCACCTTTTCATTTTGATATTAGTGCCGCAGCTTGAAAAATATACTAGATGT 480
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 TATCTTCACAAGTTACAACAGCTAGGATGGTGTATGCTTGTCCTTTTCCTTTCATCCTTT 540
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 GTATCAGAACATCAGAGGTACTCAATTCTAACTATAGAAAAGTGCTGTAAATAGCTATGT 600
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 TTTGGCAGGTGGTAACTTAAAATACAGAGATCTTATTGGCCTAAAAATTGTTTAGATTCC 660
consensus_8913#1 ------------------------------------------------------------
consensus_8913#0 AGTAAAACAAGGTCATGAGTGAATACAGAAATTCCTAGTTTTTGTTTTGCACTCTCAGAA 720
consensus_8913#1 ----------------------------------GAGGCTCAGGTTGTGGAATCCAAGGA 26
* * *** ** * ** ** *
consensus_8913#0 TTTCTTTGGCTGATGGTGTAAATGGAGTAGATAATTTCAAGCTGGCGGATAAAACAACAG 780
consensus_8913#1 C------GG--AACGATCTCAGTTGCTTCAGCATTT----GCTGGTCATCAGGAAGCCGT 74
** * * * * * * * * * ** ***** * * *
consensus_8913#0 AAATGCTTTAAAAAATAAAACAAGCTCTTATTTATTAGGAACAATTCACTGAGACACTGA 840
consensus_8913#1 ACAAGACAGGGATCACAAATTTTTGTCTAAAGCAGTTGAAGAAGCTTACCAAGGAGTAGA 134
* * * * * *** *** * * * * * * * ** ** **
consensus_8913#0 TTG-----GCAGCAGTATGACTATTGTATTCTTTGCCAGCCAATTTGGGCCGATAATGCA 895
consensus_8913#1 TTGTGGCCATGGAGGTCCATTTGGTGCAGTTGTTGTCCGTAATGATGAGATAGTAGT-TA 193
*** * ** * ** * * *** * * * ** * ** * *
consensus_8913#0 TTTAACATTA-GTTTCTTTCCATTGTTTGGTTATCTTTTCACATAATAAATGTTTTTCTG 954
consensus_8913#1 GTTGCCATAACATGGTTTTGGATTACACTGATCCAACTGCGCATGCTGAAGTAACTGCAA 253
** *** * * *** *** * * * * *** * ** * *
consensus_8913#0 TGCTATAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAT 1014
consensus_8913#1 TAAGAGAGGCTTGCAAAAAGCTTGGAAAAATTGAGTTGTCAGACTGTGAAATGTATGCAT 313
* * ******************************************************
consensus_8913#0 CATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGG 1074
consensus_8913#1 CATGTGAACCTTGCCCAATGTGTTTCGGCGCTGTGCATCTATCACGGATTAAGAGGCTGG 373
************************************************************
consensus_8913#0 TGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATG 1134
consensus_8913#1 TGTATGGAGCCAAGGCAGAAGCTGCTATTGCCATTGGATTCGATGACTTCATTGCTGATG 433
************************************************************
consensus_8913#0 CTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCA 1194
consensus_8913#1 CTTTGAGGGGAACTGCTTACTACCAGAAGGCCAACTTGGAGATAAGGCGGGCAGATGGCA 493
************************************************************
consensus_8913#0 ATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACT 1254
consensus_8913#1 ATGGAGCCCTGATTGCTGAACAAGTCTTCGAGAACACTAAGGAGAAGTTTCGGATGTACT 553
************************************************************
consensus_8913#0 AATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTC 1314
consensus_8913#1 AATTGTAAGTAAATACATTGTGGGATTTCACATCGCAAAAGTTCCAAACGTTCAGAAGTC 613
************************************************************
consensus_8913#0 AGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAA 1374
consensus_8913#1 AGAAAGAATAATGTAACCTTCGGCATTCTGCCATTAGTGGACCATAAGCTATCAATTTAA 673
************************************************************
consensus_8913#0 ATATATGTTACTCTCATTATGAGGAAAGA------------------- 1403
consensus_8913#1 ATATATGTTACTCTCANTATGAGGAAAGAAAATTGNTCACTCGAGACT 721
**************** ************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||