Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8917 cluster # 8917       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8917#0 length = 1366 sequences # 3  
consensus_8917#1 length = 544 sequences # 3  

consensusID : consensus_8917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1366
fasta sequence
                              [CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG-CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGGTCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAGTTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCGTCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAACTTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT]

[+] EMBL OSS14569A            [CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTG CCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGTGCGTCGCCGCCGACCCCGCCGNGGTCCCCGNCAAAGTTGCTnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB648956             [            ATTCTACCCTCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGGTCCCTGGGCGGCTACCACGTGATCGACACCGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK109551             [                                                            GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCGGCGGCGGCGGCGGAGAAGGACGCGGCGCCGAACGGGTCGCTGGGCGGGTACGACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAGTTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCGTCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAACTTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT]


>consensus_8917#0 CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCT GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGA GAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACG ACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGC GCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCG GTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCGCCAAG CTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATC GACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGG TCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCC GGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAG TTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCG TCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAAC TTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATC GGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCG CCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGG TCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGAC GCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTG CTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTC CGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAG GGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAA TGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTT TTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGG TATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT



consensusID : consensus_8917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 544
fasta sequence
                              [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGC-ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA]

[-] EMBL AU173784             [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGC ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGA                                                                                                             ]
[-] EMBL AU091793             [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGCGACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTNCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCNGCC                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU173783             [                                                                                                                    CGC ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA]


>consensus_8917#1 TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCA TATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGCA CCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCT CTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGC CGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGA CCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGG CCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGG GCTNACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCG CGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGG GAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8917#0      CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCT 60
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGA 120
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACG 180
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      ACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGC 240
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCG 300
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCGCCAAG 360
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      CTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATC 420
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGG 480
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      TCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCC 540
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAG 600
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      TTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCG 660
consensus_8917#1      -----------------TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAAT 43
                                            *     ***       * *     *        *    

consensus_8917#0      TCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAAC 720
consensus_8917#1      TCAA-----CCTACAAACTT-----CATATTCGACTTACATATGAAATCTGGAG-CTAAT 92
                      **       *   * *** *     *    ***    ** *    *  ****** * ** 

consensus_8917#0      TTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGT-CATCCTCTCAGGGGCGCACACCAT 779
consensus_8917#1      TTAATTTCTA----CCCCG----CAAATTCGCCGCACCTGCACGCAGGGGCGCACACCAT 144
                      **       *    ** **    ***   *  **  * * * * ****************

consensus_8917#0      CGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGC 839
consensus_8917#1      CGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGC 204
                      ************************************************************

consensus_8917#0      GCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGG 899
consensus_8917#1      GCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGG 264
                      ************************************************************

consensus_8917#0      GTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGA 959
consensus_8917#1      GTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGA 324
                      ************************************************************

consensus_8917#0      CGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCT 1019
consensus_8917#1      CGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCT 384
                      *************************************** ********************

consensus_8917#0      GCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCT 1079
consensus_8917#1      GCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGACTACTTCCT 444
                      *************** ************** ***** ** ********************

consensus_8917#0      CCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCA 1139
consensus_8917#1      CCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCA 504
                      ************************************************************

consensus_8917#0      GGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGA 1199
consensus_8917#1      GGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA-------------------- 544
                      ****************************************                    

consensus_8917#0      ATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTT 1259
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      TTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATG 1319
consensus_8917#1      ------------------------------------------------------------
                                                                                  

consensus_8917#0      GTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT 1366
consensus_8917#1      -----------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)