These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1366 fasta sequence [CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG-CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGGTCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAGTTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCGTCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAACTTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT] [+] EMBL OSS14569A [CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTG CCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGTGCGTCGCCGCCGACCCCGCCGNGGTCCCCGNCAAAGTTGCTnc ] [+] EMBL CB648956 [ ATTCTACCCTCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCTGCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGGTCCCTGGGCGGCTACCACGTGATCGACACCGCCA ] [+] EMBL AK109551 [ GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGAGAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACGACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGCGCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCGGTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCG CCAAGCTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATCGACACGGTGGCCGGGAGCGGCGCGGCGGCGGCGGCGGAGAAGGACGCGGCGCCGAACGGGTCGCTGGGCGGGTACGACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCCGGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAGTTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCGTCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAACTTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGAATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTTTTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATGGTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT] consensusID : consensus_8917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 544 fasta sequence [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGC-ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA] [-] EMBL AU173784 [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGC ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGA ] [-] EMBL AU091793 [TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAATTCAACCTACAAACTTCATATTCGACTTACATATGAAATCTGGAGCTAATTTAATTTCTACCCCGCAAATTCGCCGCGACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTNCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCNGCC ] [-] EMBL AU173783 [ CGC ACCTGCACGCAGGGGCGCACACCATCGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGCGCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGGGTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGACGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCTCCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCAGGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8917#0 CTACTATTTCAGATTCTATTATCCCAACGCCCAACCTGCACACACTTCACTCTCGCTGCT 60 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GCGAAACCAGTCACGGGCCACTCACAACCACCACCCTAAACGTAGCTAGCTATTGAGAGA 120 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GAGATCGAGGTGGGTGCAATGGCGGCCATGGTGAGACGGCGGCCGTCGCCGGCGGTGACG 180 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 ACGATGCCGGTGGTCCTGGTGGTGGTTGTGTTTGTCGGCGTTGTGGTGGGGGGAGCGAGC 240 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GCTTCGGCGGGGCCGCTCAAGGCACACTACTACCGGCACGTGTGCCCGGCGGCGGAGGCG 300 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GTGGTGCGCGACATCGTGACGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCGCCAAG 360 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 CTGCTCCGCCTCTTCTTCCACGACTGCTTCGTCAGGGGGTGCGACGCGTCGGTGCTGATC 420 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GACACGGTGGCCGGGAGCGGCGCCCCTGCGGCCGCCGACAACGACTCTGCACCGAACGGG 480 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 TCCCTGGGCGGCTACCACGTGATCGACACCGCCAAGGCCGTCCTGGAGGCCGTATGCCCC 540 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GGCGTCGTCTCCTGCGCCGACATCGTCGCGCTCGCCGCCAGGGACGCCGTCTCCTACCAG 600 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 TTTGGGAGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCTGGCG 660 consensus_8917#1 -----------------TTTTTTATTTTTGGTAAAATACAAAATTTTAAACCAATTCAAT 43 * *** * * * * consensus_8917#0 TCGGAGGCGCTGGCGAACCTGCCGGCGCCGTCGGACAACTTCACGACGCTGGAGTCCAAC 720 consensus_8917#1 TCAA-----CCTACAAACTT-----CATATTCGACTTACATATGAAATCTGGAG-CTAAT 92 ** * * *** * * *** ** * * ****** * ** consensus_8917#0 TTCGCCGGCAAGGGCCTCGACGTCAAGGACCTCGT-CATCCTCTCAGGGGCGCACACCAT 779 consensus_8917#1 TTAATTTCTA----CCCCG----CAAATTCGCCGCACCTGCACGCAGGGGCGCACACCAT 144 ** * ** ** *** * ** * * * * **************** consensus_8917#0 CGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGC 839 consensus_8917#1 CGGCGTGGGCCACTGCAACCTCTTCGGCGCCCGCCTCTTCAACTTCACCGGCGCCGCCGC 204 ************************************************************ consensus_8917#0 GCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGG 899 consensus_8917#1 GCCGTCGGCCGACCCGTCGCTGAACGCCGCCTACGCCGCGCAGCTGCGGGCGGCGTGCGG 264 ************************************************************ consensus_8917#0 GTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGA 959 consensus_8917#1 GTCGCCGTCGAACAACGCCACCGCGGTGCCCATGGACCCCGGGAGCCCCGCCCGGTTCGA 324 ************************************************************ consensus_8917#0 CGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTCTTCGCCTCCGACGCCGCGCT 1019 consensus_8917#1 CGCCCACTACTTCGTCAACCTCAAGCTCGGCCGGGGCCTNTTCGCCTCCGACGCCGCGCT 384 *************************************** ******************** consensus_8917#0 GCTCGCCGACCGCCGCGCCGCCGCGCTCGTCCACGGCCTCACCGACCAGGACTACTTCCT 1079 consensus_8917#1 GCTCGCCGACCGCCGGGCCGCCGCGCTCGTNCACGGGCTNACCGACCAGGACTACTTCCT 444 *************** ************** ***** ** ******************** consensus_8917#0 CCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCA 1139 consensus_8917#1 CCGGGAGTTCAAGAACGCCGTCCGCAAGATGGGCCGCGTCGGCGTGCTCACCGGCGACCA 504 ************************************************************ consensus_8917#0 GGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAATGATTTTAGTTGGTGATTGA 1199 consensus_8917#1 GGGCGAGATCCGGAAGAACTGCAGGGCCGTCAACGGGAAA-------------------- 544 **************************************** consensus_8917#0 ATGATGATGAAATCGTCGTGATCAGTTCATAATTGTGGATTTGTGGATGGATGGAGTTTT 1259 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 TTTTTTTTTTTTCAGATTTTTTGTTTTTTTTTTAACTTTGTTTGTTGTGAGTTTGGTATG 1319 consensus_8917#1 ------------------------------------------------------------ consensus_8917#0 GTATAGTGAGAGAGTTCAAAGTAAGGGATATATATATAGCGGTTTAT 1366 consensus_8917#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||