These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1257 fasta sequence [CACTGCACTCTCCTCTACAAGCGGATCACCGGAGAAGAGATCGATCGGTAGCCGTAGCACGGCACGGTGGTTGATCGGCGGCGGCCATGGCCGGAGCGGAGTGGTCGCCGTTCGACGGGGACGCCGCCTTCGCGGAGTACTCGTCGGCGGTGCTGGCCGAGCTCGGCGGGTGGGCGGCGCCGGGCGAGGAAGGCGGCGCGGGGATGATGGTACCGGCGGCGCTGGATCTGCCGGTGGATGTGGTGGGGGCGGCGGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCGAGATCGGGCGACGGCGCCGCCGCCGCCGCGTCGTCGAGCTCTAGCGGGGAGCCCGCCGCCCCCGACAAGCGACCGGCCGCCGCCGAGGCAGCGCCGGCGGCGGCGGCGACGGCGACGGCGACGGCGAAGAAGGGGCAGAAGAGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGGTAAGTTGGTAAGTAGCTACACAATGGACCTCATTAATTAGAATTATTAGCAGATGTTAAATTGTATATGTTCTTATGATACTGCTAACGAAATCTGGAAGTTGGAACTCACGAAAATTTAGACACTCCTAAATTAAGTTGATTCTTACTCCTATGTAAGAGACTGCACACTAATAGAATCAAATTTTATAATTGTTCTTACT] [+] EMBL AY341859 [CACTGCACTCTCCTCTACAAGCGGATCACCGGAGAAGAGATCGATCGGTAGCCGTAGCACGGCACGGTGGTTGATCGGCGGCGGCCATGGCCGGAGCGGAGTGGTCGCCGTTCGACGGGGACGCCGCCTTCGCGGAGTACTCGTCGGCGGTGCTGGCCGAGCTCGGCGGGTGGGCGGCGCCGGGCGAGGAAGGCGGCGCGGGGATGATGGTACCGGCGGCGCTGGATCTGCCGGTGGATGTGGTGGGGGCGGCGGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCGAGATCGGGCGACGGCGCCGCCGCCGCCGCGTCGTCGAGCTCTAGCGGGGAGCCCGCCGCCCCCGACAAGCGACCGGCCGCCGCCGAGGCAGCGCCGGCGGCGGCGGCGACGGCGACGGCGACGGCGAAGAAGGGGCAGAAGAGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGGTAAGTTGGTAAGTAGCTACACAATGGACCTCATTAATTAGAATTATTAGCAGATGTTAAATTGTATATGTTCTTATGATACTGCTAACGAAATCTGGAAGTTGGAACTCACGAAAATTTAGACACTCCTAAATTAAGTTGATTCTTACTCCTATGTAAGAGACTGCACACTAATAGAATCAAATTTTATAATTGTTCTTACT] consensusID : consensus_8918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1179 fasta sequence [CCCCCTGTTTATTTTCGGGCCCCCCCCCGACAAGCGCCGCCCCTGAGCAGCCCCGCG-CGCGCGACGCGACGCGAC-GCGAAGAA-GGGCAGAAGAGGCGAGCACCCGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGAT-GCTA-AGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGC-ACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGACTTATCTCCCTACACTAGATATTTGAAGTGTCATCTCATCTCTTGGCATGGAGGCAGCTGGCAGGAAGGCAAATCACGCAGCTAGGGTTCTTTGATTAGCTCCTGCTGAAATCCACCGTCTCAGTCATTACCTACCAATTAATGGCTTGGAAATTAGGAGTATATATTAATTAAGCTTATTGCAACGATGGAGAGCTGACTTACAAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCGAACTTTTATGTGCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATCTTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTATGTAGGTTGGTGTAGATATATACTACTAGCTATATCTATGTACACTTATGCTAAATTAATGTTGTGCTGTAGTATAATGACAACCATTCAACCT] [+] EMBL BI798784 [CCCCCTGTTTATTTTCGGGCCCCCCCCCGACAAGCGCCGCCCCTGAGCAGCCCCGCG CGCGCGACGCGACGCGAC GCGAAGAA GGGCAGAAGAGGCGAGCACCCGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGAT GCTA CAGTGGAGGAAGTATGGCCAAAA GCCGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGACGGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGC CGGCGTC GCGGC CC CCGTC CGGCGC ACATCCACGGC C GC GCCGTCGCCCTC CCGA CAAATGTCGGCGTTCGTCTC CC CC CCACA CCGCATATGCTGTACGGTTTACCCCGG TGCACCC CCGTCCTCCGAGACC CCGTCAGCTGCTCGAT CCGACGACGACGTCTTTCCAGGA CTG ACAATA ] [+] EMBL BI799118 [ cgacCGCCGCCCC GAGCAGCGCCGCGTCGCGCGACGCGACGCGACGGCGAAGAAGGGGCAGAAGAGGCGAGCACCCG TCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGC ACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAAC ATAGCGAGGGGCTACAACGCCCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCA ] [+] EMBL AK069091 [ AGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGC ACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACG CCCTGGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCGGTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTTAGACTTGGATGACAATACTCAAATATACATGCATGACTTATCTCCCTACACTAGATATTTGAAGTGTCATCTCATCTCTTGGCATGGAGGCAGCTGGCAGGAAGGCAAATCACGCAGCTAGGGTTCTTTGATTAGCTCCTGCTGAAATCCACCGTCTCAGTCATTACCTACCAATTAATGGCTTGGAAATTAGGAGTATATATTAATTAAGCTTATTGCAACGATGGAGAGCTGACTTACAAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCGAACTTTTATGTGCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATCTTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTATGTAGGTTGGTGTAGATATATACTACTAGCTATATCTATGTACACTTATGCTAAATTAATGTTGTGCTGTAGTATAATGACAACCATTCAACCT] [+] EMBL AU091290 [ AGGANGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGGAGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACCACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCAACATCCACGGCGCGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGCATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCTCGATGCCGACGACGACGTCTTTGCAGGAGCTGAA ] [+] EMBL BE230447 [ ATGGAGAGCTGACTTACAAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCAAACTTTTATGTGCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATCTTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8918#0 CACTGCACTCTCCTCTACAAGCGGATCACCGGAGAAGAGATCGATCGGTAGCCGTAGCAC 60 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 GGCACGGTGGTTGATCGGCGGCGGCCATGGCCGGAGCGGAGTGGTCGCCGTTCGACGGGG 120 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 ACGCCGCCTTCGCGGAGTACTCGTCGGCGGTGCTGGCCGAGCTCGGCGGGTGGGCGGCGC 180 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 CGGGCGAGGAAGGCGGCGCGGGGATGATGGTACCGGCGGCGCTGGATCTGCCGGTGGATG 240 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 TGGTGGGGGCGGCGGCGCGGGAGGAGGAGGAGGAGGAGGAGGAGGCGCCGGCGAGATCGG 300 consensus_8918#1 ------------------------------------------------------------ consensus_8918#0 GCGACGGCGCCGCCGCCGCCGCGTCGTCGAGCTCTAGCGGGGAGCCCGCCGCCCCCGACA 360 consensus_8918#1 ------------------------CCCCCTGTTTATTTTCGGGCCCC----CCCCCGACA 32 * * * * ** *** ********* consensus_8918#0 AGCGACCGGCCGCCGCCGAGGCAGCGCCGGCGGCGGCGGCGACGGCGACGGCGACGGCGA 420 consensus_8918#1 AGCG-----CCGCCCCTGAG-CAGCCCC----GCGCGCGCGACG-CGACG-CGACG-CGA 79 **** ***** * *** **** ** *** ****** ***** ***** *** consensus_8918#0 AGAAGGGGCAGAAGAGGGCGAGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGATTG 480 consensus_8918#1 AGAAGGG-CAGAAGAGG-CGAG-CACCC---GTTCGCGTTCATGACCAAGAGCGAGATTG 133 ******* ********* **** ** ** ***************************** consensus_8918#0 ACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCC 540 consensus_8918#1 ACCACCTCGAGGATG-CTA-AGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCC 191 *************** *** **************************************** consensus_8918#0 CATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGG 600 consensus_8918#1 CATTCCCAAGGAGCTACTACAGGTGCACCAACAGCAAGTGCACTGTGAAGAAGCGCGTGG 251 ************************************************************ consensus_8918#0 AGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACC 660 consensus_8918#1 AGCGGTCTTCCGACGACCCTTCCGTCGTGATCACCACCTACGAGGGCCAGCACTGCCACC 311 ************************************************************ consensus_8918#0 ACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCG 720 consensus_8918#1 ACACCGCCTCCTTCCAGCGCGGCGTCGGCGGCGCCGCCGTCGCGGCGCACATCCACGGCG 371 ************************************************************ consensus_8918#0 CGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGC 780 consensus_8918#1 CGGCGGCCGTCGCCCTCGCCGAGCAAATGTCGGCGTTCGTCTCGCCGCCGCCACAGCCGC 431 ************************************************************ consensus_8918#0 ATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCT 840 consensus_8918#1 ATATGCTGTACGGTTTACCCCGGTTGCACCCGCCGTCCTCCGAGACCGCCGTCAGCTGCT 491 ************************************************************ consensus_8918#0 CGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCC-T 899 consensus_8918#1 CGATGCCGACGACGACGTCTTTGCAGGAGCTGAACAATAGCGAGGGGCTACAACGCCCCT 551 ********************************************************** * consensus_8918#0 GGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCG 959 consensus_8918#1 GGCTATAATAATAGCCCCCAGGCGGCGGTGACCATCGCGCAGCGGCCGCCGTCGCCGTCG 611 ************************************************************ consensus_8918#0 GTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTT 1019 consensus_8918#1 GTGCCTCCGGCTGTTTCGTTTGACAAGGGGCTACTTGATGATATTGTGCCTCCTGGAGTT 671 ************************************************************ consensus_8918#0 AGACTTGGATGACAATACTCAAATATACATGCATGG--TAAGTTGGTA-AGTAGCTACAC 1076 consensus_8918#1 AGACTTGGATGACAATACTCAAATATACATGCATGACTTATCTCCCTACACTAGATATTT 731 *********************************** ** * ** * *** ** consensus_8918#0 AATGG---ACCTCATTAATTAGAATTA------TTAGCAG-ATGTTAAATTGTA----TA 1122 consensus_8918#1 GAAGTGTCATCTCATCTCTTGGCATGGAGGCAGCTGGCAGGAAGGCAAATCACGCAGCTA 791 * * * ***** ** * ** * **** * * **** ** consensus_8918#0 TGTTCTTATGAT--ACTGCTAACGAAATCTGGA-----AGTTGGAACTCACGAA-----A 1170 consensus_8918#1 GGGTTCTTTGATTAGCTCCTGCTGAAATCCACCGTCTCAGTCATTACCTACCAATTAATG 851 * * * **** ** ** ****** *** ** ** ** consensus_8918#0 ATTTAGACACTCCTAAATTAAGTTGATT---CTTACTCCTATGTAAGAGA-CTG-CACAC 1225 consensus_8918#1 GCTTGGAAATTAGGAGTATATATTAATTAAGCTTATTGCAACGATGGAGAGCTGACTTAC 911 ** ** * * * ** ** *** **** * * * * **** *** * ** consensus_8918#0 TAATAGAATCAAATTTTATAATTGTTCTTACT---------------------------- 1257 consensus_8918#1 AAGTGATTGCAAACCTCATTGGTCAGCCGGTGGAGTATTTTTCATGGCGAACTTTTATGT 971 * * **** * ** * * consensus_8918#0 ------------------------------------------------------------ consensus_8918#1 GCCCGATTAACCGTAGTCTGTGTATGCAGTTGGCAGCACTAGGCATTCCCTGACTGTATC 1031 consensus_8918#0 ------------------------------------------------------------ consensus_8918#1 TTCTTGGCAGAAGAATCTCTACCTATGTTAACTACTTCTGCATTATAATGTGTATGTAGG 1091 consensus_8918#0 ------------------------------------------------------------ consensus_8918#1 TTGGTGTAGATATATACTACTAGCTATATCTATGTACACTTATGCTAAATTAATGTTGTG 1151 consensus_8918#0 ---------------------------- consensus_8918#1 CTGTAGTATAATGACAACCATTCAACCT 1179 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||