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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1219 fasta sequence
[CAAACTCTCTCTCTCTCTCTCTCTCTCTCTGAATCTCTGGATCTCTGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCTGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCTGTATCAATTGTAACTTGTAAGTTTCTCTTGATCATTTAAGAAGATAAGGAACCTCAA]
[+] EMBL AK060509 [CAAACTCTCTCTCTCTCTCTCTCTCTCTCTGAATCTCTGGATCTCTGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCTGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCTGTATCAATTGTAACTTGTAAGTTTCTCTTGATCATTTATTAAGATAAGGAACCTCA ]
[+] EMBL CB660609 [ CTCTGAACATTCCAAGAACTCATAAGTTACCCGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTG ]
[-] EMBL CB660610 [ AAGCCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCGGTATCAATTGTAACTTGTAAGTTTCTCTGGATCATTAAAGGAGATAAGGAACCTCAA]
[-] EMBL CB675313 [ CCGGTGTTCCTGCGTGGCTTCGGGTGCGGCGGCGGCGGCGGCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCGCGAAGCCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTCGCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTCCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAGCTGTGACATCTGTATCAAAGGTAACTTGTAAGTTTCTCTTGATCATTTAAAAAAAAAAAGA ]
[+] EMBL CA756003 [ tgCAGAGTTGCATGGCTCAGCCAGGAGAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGCGACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCGCCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAAGAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACATGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGTTCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGGAGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTAAAGATTACTGAGCAGCAnaaaaaaa ]
consensusID : consensus_8919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[TGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGTGCGGTTTTCTTGATCCGTTTTGGTTTCGAGGAGGTGCGGCGCCATTGCCAAGCTCGACCGAGCGGGAGACTGATCGTGAACTCTCTCCTTCTGTGCAGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCG]
[+] EMBL CB675312 [TGAAAACTCTGAACATTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGTCTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTAGCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGTGCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCTGGGACCTCCCCGGTGCGGTTTTCTTGATCCGTTTTGGTTTCGAGGAGGTGCGGCGCCATTGCCAAGCTCGACCGAGCGGGAGACTGATCGTGAACTCTCTCCTTCTGTGCAGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGTGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8919#0 CAAACTCTCTCTCTCTCTCTCTCTCTCTCTGAATCTCTGGATCTCTGAAAACTCTGAACA 60
consensus_8919#1 ---------------------------------------------TGAAAACTCTGAACA 15
***************
consensus_8919#0 TTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGT 120
consensus_8919#1 TTCCAAGAACTCATAAGTTACCTGTGATCTGTGAAGCTTGAGCTGAAGCTGTGACAGTGT 75
************************************************************
consensus_8919#0 CTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTA 180
consensus_8919#1 CTCACTGATCGTTGATCACTCAGCTTGGCTGCTACTGTGCATTCACTGCGTGGTTAGCTA 135
************************************************************
consensus_8919#0 GCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGT 240
consensus_8919#1 GCTAACTGAGCAGAAGAGCTTTAGCAATGGCGACGCCGGGGCAGCAGCTGCCGCCGGGGT 195
************************************************************
consensus_8919#0 TCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGT 300
consensus_8919#1 TCAGGTTCCACCCGACGGACGAGGAGCTGGTGGTGCAGTACCTCCGGCGGAGGGCGCTGT 255
************************************************************
consensus_8919#0 GCCGGCCGCTCCCTGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCT 360
consensus_8919#1 GCCGGCCGCTCCCCGCCGCCGTCATCCCGGACGTCCACGACGCCACCGTGCTCGACCCCT 315
************* **********************************************
consensus_8919#0 GGGACCTCCCCGGCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGG 420
consensus_8919#1 GGGACCTCCCCGGTGC-GGTTTTCTTGAT-----CCGTTTTGGTTTCGAGGAGGT-GCGG 368
************* ** ** * *** * ** * *** * ** * ****
consensus_8919#0 CGGCGAGCGGCGGCGGCGGGTGGCGGAGGAGGAGGGCGGGGAGTGGGTACTG----GAAG 476
consensus_8919#1 CGCC-ATTGCCAAGCTCGACCGAGCGGGAGACTGATCGTGAACTCTCTCCTTCTGTGCAG 427
** * * * * ** * * * * ** * * * * ** * **
consensus_8919#0 GCGACGGGGGCGGAGAAGCCGGTGTTCCTGCGTGGCTTCGGGT-GCGGCGGCG-GCGGCG 534
consensus_8919#1 GCGCCGGCGATGGTGAGGCCTACTTCTTCAGCTTCCGGCAGCTCGCGGCGGCGAGCGGCG 487
*** *** * ** ** *** * * * * * * ********* ******
consensus_8919#0 GCGGCGGCGGCCAGCACCTCGTCGGCGTCAAGACGACGCTGCTCTTCCTCCGCG-CGAAG 593
consensus_8919#1 GCGGCGGGTGGCGG-AGGAGGAGGGCGGGGAGTGGGTACTGGAAGGCGACGGGGGCGGAG 546
******* * * * * * **** ** * *** * * * * ** **
consensus_8919#0 CCGCCGTCGCGCACCCACTGGGTCATGCACGAGTACCGCCTCGCCGCCGCCGGCGCTGTC 653
consensus_8919#1 AAGCCGGTGTTCCTGCGTGGCTTCGGGTGCG----------------------------- 577
**** * * * * ** * **
consensus_8919#0 GCCGTCGCCGCCGCCGGACAGACAAAGCGCGGGAACCATAGTTGCATGGCTCAGCCAGGA 713
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 GAATGGGTGGTGTGCCGGATTTTTCTGAAGAACAACAGGTCATCAAGAAGGCGAGCCGGC 773
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 GACGCCGACGGCGAAACGCCGGTCACCGGTGTCCACGGTCACCGTCGGCGGCAGCCGTCG 833
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 CCGTCGCCGTCGTCGTCGAGCTGTGTCACGGCTGAGGTTTCAGACGGAGAAGGAGAAGAA 893
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 GAAGTCAGCAGTGGCAGCATCAATGGTGCTCCATCTGCCTCTCAAAGAGAGGCCTAGACA 953
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 TGCTGAAAATCTCCTTAATTAATTACTAGTACTAGTGATTTTTTTTCTTCTTCTTCTTGT 1013
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 TCTCTTTTGTCCCTCCATTGCTTTTCCTGTACTTCTCCTTGTACCATAATGATTAGTAGG 1073
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 AGTTTAAGTTTAAGCAGCAGGTTGAAGAGAGAAGCCCCAGCTTAAGAAAGCTCCTAAGTA 1133
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 AAGATTACTGAGCAGCAGCTGTGACATCTGTATCAATTGTAACTTGTAAGTTTCTCTTGA 1193
consensus_8919#1 ------------------------------------------------------------
consensus_8919#0 TCATTTAAGAAGATAAGGAACCTCAA 1219
consensus_8919#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||