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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1065 fasta sequence
[TTTCCCCCACCTACACGCCACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTTATATCCTTAACACAAGGTCTAATACTATTTCTTAAGCTGCTTTCTGATGC]
[+] EMBL AK068037 [TTTCCCCCACCTACACGCCACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTC ]
[+] EMBL CB665278 [ CTCCAGATTTGCTCCAAGGGTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAGAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTT ]
[-] EMBL CB631337 [ tgcaggtgAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGACCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGTTGCTATGATGATGAGAGAAAACGGCAATGTAG ]
[-] EMBL CB665279 [ GCATCCTGGACCAGACCCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTCCGCTCCTCCGACGGGGCAGGCCGGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCAGGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAAGATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAGGCTTAGTTACTCTTAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTTATATCCTTAACACAAGGTCTAATACTATTTCTTAAGCTGCTTTCTGATGC]
[+] EMBL AK059265 [ TGACCTCTTCATCATCTTCTCTACAAATGCTTTTGCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGATGATGAGAGAAAACGGCAATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGCCTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGAGAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCATCTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTTATATCCTTAACACTTTGTCTAATACTATTTCTTAA ]
consensusID : consensus_8922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence
[CACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGTATACTATTCTACAGGTGGTAGGATCAGTTCCTGTTTGGATGGTAGGCTGAAACTGGTGCAGTGGGCACCTCTCATCCCCTCCCAGTTCCACATTTTGAAGAAAAAATATATCTTCATCGGTCTTGGGCTAAATTATTCAAGGAATTTTCAGCTCAGCCTGGCACTGTTGGAGAGTAGTAGCAGCATCAGCATGAGCTAAGTTGTCACCAAAGATCCAAATTTTTGCTGTGTTGCTTGGTTCTTGAAGGCAACTATTCATTTAATTGGCTTCTGCTTCTGAGTTCTGAGTTCTGAATAATTGGATGGACATGGATTGCTTGCTCCCCTTTCTTCCATGAAAGTGCAGGTGAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGC]
[+] EMBL CB631336 [CACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAAATGCTCCTCCAGATTTGCTCCAAGTATACTATTCTACAGGTGGTAGGATCAGTTCCTGTTTGGATGGTAGGCTGAAACTGGTGCAGTGGGCACCTCTCATCCCCTCCCAGTTCCACATTTTGAAGAAAAAATATATCTTCATCGGTCTTGGGCTAAATTATTCAAGGAATTTTCAGCTCAGCCTGGCACTGTTGGAGAGTAGTAGCAGCATCAGCATGAGCTAAGTTGTCACCAAAGATCCAAATTTTTGCTGTGTTGCTTGGTTCTTGAAGGCAACTATTCATTTAATTGGCTTCTGCTTCTGAGTTCTGAGTTCTGAATAATTGGATGGACATGGATTGCTTGCTCCCCTTTCTTCCATGAAAGTGCAGGTGAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTGAAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCATCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTCTCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8922#0 TTTCCCCCACCTACACGCCACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAA 60
consensus_8922#1 ------------------CACATTCTCTCTCCCTCTCCTCCCCCCCATTGCGGCTACCAA 42
******************************************
consensus_8922#0 ATGCTCCTCCAGATTTGCTCCAAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTG 120
consensus_8922#1 ATGCTCCTCCAGATTTGCTCCAAG-TATACTATTCTA---CAGGTGGTAGGATCA-GTTC 97
************************ * ** *** * **** * ** ** * *
consensus_8922#0 AAGAACAAAGAAGAGGTTGTCAAGCTGAAGCTGAGAGGAGAAAAGAGAGATAGAGAGAGA 180
consensus_8922#1 CTGTTTGGA--------TGGTAGGCTGAAACTG----GTGCAGTGGGCACCTCTCATCCC 145
* * ** * ****** *** * * * * * *
consensus_8922#0 TGGAAGGTGATAGCTTCTCAGGGATGGCCAATGGCGGCCAGGTGGACAACAAGCTGATCC 240
consensus_8922#1 CTCCCAGTTCCACATTTTGAAGAAAAAATA----TATCTTCATCGGTCTTGGGCTAA--- 198
** * ** * * * * * * * * *** *
consensus_8922#0 AGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATCCTGGACCAGAACCGGATGCTCA 300
consensus_8922#1 ----ATTATTCAAGGAATT--------TTCAGCTCAGCCTGG--CACTGTTGGA-GAGTA 243
*** **** ** ***** ** ***** ** *** * *
consensus_8922#0 TCAACGAGATCAACCAGAACCACGAGTCCCGGGCGCCGGACAACCTCACCCGGAACGT-C 359
consensus_8922#1 GTAGCAGCATCAGCATGAGCTA--AGTT---GTCACCAAAGATCCAAATTTTTGCTGTGT 298
* * **** * ** * * *** * * ** * * ** * **
consensus_8922#0 GGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTGTCGTCGGCCTCTACGCCGACCTC 419
consensus_8922#1 TGCTTGGTTCTTGAAGGCAACTAT--------TCATTTAATTGGCTTCTGC--------T 342
** * * * ** **** * * * * * *** *** *
consensus_8922#0 TCGGCGTCGTTCGCCCGCACGATGGATGCCTCGTCGGAGGGCGATTCGTCAGGGACGCTC 479
consensus_8922#1 TCTGAGTTCTGAGTTC------TGAATAATTGGATGGACATGGATTGCTT--GCTCCCCT 394
** * ** * * * ** ** * * *** **** * * * *
consensus_8922#0 CGCTCCTCCGACGGGGCAGGCC-GGTCCGGCCAGAAGCGTGTCCGGCCCGGCTAGGATCA 538
consensus_8922#1 TTCTTCCATGAAAGTGCAGGTGAGGTTTAGCTAGCTAGCTCTGGTGCCAAGAACAAGCTG 454
** * ** * ***** *** ** ** * * *** *
consensus_8922#0 GGTGCCATTCTTGGCATTTTGATGCTCAGATCAAATAGGGTGGATGAAGATGAAGATGAA 598
consensus_8922#1 AAGAACAAAGAAGAGGTTGTCAAGCAGAAGCTGAGAGGAGAAAAGAGAGATAGAGA-GAG 513
** * ** * * ** * * * * * **** *** **
consensus_8922#0 GATGATGGTGATGATGCCATTGTCACTTCTTGGGGACTTCTCTAGTGGTGTTACTATTAG 658
consensus_8922#1 ATGGAAGGTGATAGCTTCTCAGGGATGGCCAATGG---CGGCCAGGTGGACAACAAGCTG 570
** ****** * * * * ** * ** * ** * *
consensus_8922#0 GCTTAGTTACTCT-TAATTTCTTTCTTGACCTCTTCATCATCTTCTCTACAAATGCTTTT 717
consensus_8922#1 ATCCAGACATTCCACAAGAGCTTCGTTCAGGTTCAGAGCATC--CTGGACCAGAAC---- 624
** * ** ** *** ** * * * **** ** ** * *
consensus_8922#0 GCACGAGTGTATCATTAGGGAGAAGCAAAACCTTTTACTATGTAGAAGAAGCTGCTATGA 777
consensus_8922#1 -CGGATGCTCATCAACGAGATCAACCAGAACC----ACGAGTCCCGGGCGCCGGACAACC 679
* * **** * ** ** **** ** * * * * *
consensus_8922#0 TGATGAGAGAAAACGGCA--ATGTAGTAGTTCTTGACCATCTCTGCTCATGGTTGTCAGC 835
consensus_8922#1 TCACCCGGAACGTCGGCCTCATCCGGGAGCTCAACAACAACATCCGCCGTG-TCGTCGGC 738
* * * * **** ** * ** ** * ** * * ** * *** **
consensus_8922#0 CTTACTGATACTAGCATTCAGTTGTTTGATTCCTGACTAGATTCAGGTTGTTGTACATGA 895
consensus_8922#1 CT--CTACGCCGACCTCTCGGC-------------------------------------- 758
** ** * * * ** *
consensus_8922#0 GAGCATATGCAGATGCAGTGTTGCATCTCTGCAGGTGTGCCAGATTGGTCAGTTCATCAT 955
consensus_8922#1 ------------------------------------------------------------
consensus_8922#0 CTCTCTCACTGGATAGATTTCAATGTCTCACTGGATAGATTTCAATGTCATTCAGTTCTT 1015
consensus_8922#1 ------------------------------------------------------------
consensus_8922#0 ATATCCTTAACACAAGGTCTAATACTATTTCTTAAGCTGCTTTCTGATGC 1065
consensus_8922#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||