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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1143 fasta sequence
[CATGGCCGTCTCCTCTACCCTACGGCGAGCTCGATCTCACCCCTCCTGGGCGGCCGCCGCGCGCGGCCTCCTCGCCACCTGGGGCGCCGGATCCGGCGGCCGCGTTCGTCATCCGCGGCATGGCGCCGCGTCCGCGTCGTTGTTCTCATCGTTGTCCAGTTCTCAGACGAGCGCCGCCGACGCACAGCTCCTCCGGGTCATAAACATGGAGATCTCCTACGCCCAGAAAGATTGCAAGAATCGCAACTGGTCAAAGGAATTAGGTGAAGGCTTTCCTTTTGAAATCCAAGATAAGGATGGTACCAACATGATGACGCTTAAGAGGAGTGACCATAAAGAACAAATTGAAGTGGAAGTGTTCTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAGTGTGAAGATGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGATAGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAGTCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTTGAAGAGTAGGTGCATTTCGACTGATATTACCGACTTCTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTCATCTTGACCAGTTTTGATTAGCAGCAATGACCAGTATTGCAGCCTTCCGCTAATAACTGTGACCNGGAGGCATTGCTGGTTGCTGCTAGCCTGCTACTCACTCACAACACGTCACATTTGATGGGATCTATGACGATCATGCAATTCGCTACAAAGATTTCACCTATGATATGTAAACTTTTGTTGTTCTGCTCCAATCCTAGCAATTTAGTGCTAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK102036 [CATGGCCGTCTCCTCTACCCTACGGCGAGCTCGATCTCACCCCTCCTGGGCGGCCGCCGCGCGCGGCCTCCTCGCCACCTGGGGCGCCGGATCCGGCGGCCGCGTTCGTCATCCGCGGCATGGCGCCGCGTCCGCGTCGTTGTTCTCATCGTTGTCCAGTTCTCAGACGAGCGCCGCCGACGCACAGCTCCTCCGGGTCATAAACATGGAGATCTCCTACGCCCAGAAAGATTGCAAGAATCGCAACTGGTCAAAGGAATTAGGTGAAGGCTTTCCTTTTGAAATCCAAGATAAGGATGGTACCAACATGATGACGCTTAAGAGGAGTGACCATAAAGAACAAATTGAAGTGGAAGTGTTCTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAGTGTGAAGATGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGATAGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAGTCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTTGAAGAGTAGGTGCATTTCGACTGATATTACCGACTTCTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCC ]
[+] EMBL AK058420 [ TCCTCTACCCTACGGCGAGCTCGATCTCACCCCTCCTGGGCGGCCGCCGCGCGCGGCCTCCTCGCCACCTGGGGCGCCGGATCCGGCGGCCGCGTTCGTCATCCGCGGCATGGCGCCGCGTCCGCGTCGTTGTTCTCATCGTTGTCCAGTTCTCAGACGAGCGCCGCCGACGCACAGCTCCTCCGGGTCATAAACATGGAGATCTCCTACGCCCAGAAAGATTGCAAGAATCGCAACTGGTCAAAGGAATTAGGTGAAGGCTTTCCTTTTGAAATCCAAGATAAGGATGGTACCAACATGATGACGCTTAAGAGGAGTGACCATAAAGAACAAATTGAAGTGGAAGTGTTCTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAGTGTGAAGATGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGATAGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAGTCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTTGAAGAGTAGGTGCATTTCGACTGATATTACCGACTTCTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTCATCTTGACCAGTTTTGATTAGCAGCAATGACCAGTATTGCA ]
[+] EMBL AU063093 [ GATTGCAAGAATCGCAACTGGTCAAAGGAATTAGGTGAAGGCTTTCCTTTTGAAATCCAAGATAAGGATGGTACCAACATGATGACGCTTAAGAGGAGTGACCATAAAGAACAAATTGAAGTGGAAGTGTTCTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAGTGTGAAGATGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGATAGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTC ]
[+] EMBL C97661 [ ACTTTCCGTAG TTGGCCATGTTTCTTTCCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTTATCTTGACCAGTTTTGATTAGCAGCAATGACCAGTATTGCAGCCTTCCGCTAATAACTGTGACCNGGAGGCATTGCTGGTTGCTGCTAGCCTGCTACTCACTCACAACACGTCACATTTGATGGGATCTATGACGATCATGCAATTCGCTACAAAGATTTCACCTATGATATGTAAACTTTTGTTGTTCTGCTCCAATCCTAGCAATTTAGTGCTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence
[GACAAGAGGAGTGCCCATAAAGACCAAATTGAAGTGGAAGTGTTCTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAATGTGAAGATGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGATAGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAGTCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTTGAAGAGTAGGTGCATTTCGACTGATATTACCGACTTTTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTTATCTTGACCAGTTTTGATTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTAGCGTATCGTTGACAGCAGGGGCAAATTCGGGGCCGTTAAATTAAATTCCCCCTA]
[-] EMBL CA760192 [GACAAGAGGAGTGCCCATAAAGACCAAATTGAAGTGGAAGTGTTCTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAATGTGAAGATGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGATAGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAACGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAGTCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTTGAAGAGTAGGTGCATTTCGACTGATATTACCGACTTTTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTTATCTTGACCAGTTTTGATTAGCAAAAAAAAAAAA ]
[+] EMBL CF319032 [ GACTGATATTACCGACTTCTTACATGCGTACATGATAAACAAAGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAATAAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCCTTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGAACAAGTTTATCTTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCGTAGCGTATCGTTGACAGCAGGGGCAAATTCGGGGCCGTTAAATTAAATTCCCCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8925#0 CATGGCCGTCTCCTCTACCCTACGGCGAGCTCGATCTCACCCCTCCTGGGCGGCCGCCGC 60
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 GCGCGGCCTCCTCGCCACCTGGGGCGCCGGATCCGGCGGCCGCGTTCGTCATCCGCGGCA 120
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 TGGCGCCGCGTCCGCGTCGTTGTTCTCATCGTTGTCCAGTTCTCAGACGAGCGCCGCCGA 180
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 CGCACAGCTCCTCCGGGTCATAAACATGGAGATCTCCTACGCCCAGAAAGATTGCAAGAA 240
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 TCGCAACTGGTCAAAGGAATTAGGTGAAGGCTTTCCTTTTGAAATCCAAGATAAGGATGG 300
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 TACCAACATGATGACGCTTAAGAGGAGTGACCATAAAGAACAAATTGAAGTGGAAGTGTT 360
consensus_8925#1 ----------------GACAAGAGGAGTGCCCATAAAGACCAAATTGAAGTGGAAGTGTT 44
********** ********* ********************
consensus_8925#0 CTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAGTGTGAAGA 420
consensus_8925#1 CTTGCCAAGCGCTGTCAATGAAGCTGAGGAAAATGGCGAGCCAGAGGATCAATGTGAAGA 104
*************************************************** ********
consensus_8925#0 TGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGAT 480
consensus_8925#1 TGGCAAACATAGAACTCACATTGGCAATGGTGTCCCGGCCCAGTACTGTATCCCTTTGAT 164
************************************************************
consensus_8925#0 AGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAA 540
consensus_8925#1 AGTGAGGGTTCGCAAAGAAGCAGCTTCATATTTGAAAATCAGCTGTAGCTCTTACCCTAA 224
************************************************************
consensus_8925#0 CGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAG 600
consensus_8925#1 CGAACTCATCATTGAGAGCTTGTCGTTTGAACCGAATGATGAATCTGGTGATTCGGCCAG 284
************************************************************
consensus_8925#0 TCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTT 660
consensus_8925#1 TCTTGAAGCTAAGTTGAGTAATCTTCCTGAGGAATTTCAGAAGGCAGTGTATTCCTACTT 344
************************************************************
consensus_8925#0 GAAGAGTAGGTGCATTTCGACTGATATTACCGACTTCTTACATGCGTACATGATAAACAA 720
consensus_8925#1 GAAGAGTAGGTGCATTTCGACTGATATTACCGACTTTTTACATGCGTACATGATAAACAA 404
************************************ ***********************
consensus_8925#0 AGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAAT 780
consensus_8925#1 AGAGTGCCATGAATACTTGTCTTGGCTGAGAAAAGTGAAGGGTCTGATTAAAAGTTGAAT 464
************************************************************
consensus_8925#0 AAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCC 840
consensus_8925#1 AAAAGTGAGGAATGGGAGCGCCATCTTGTACTTTTCGTAGTTTGGCCATGTTTCTTTTCC 524
************************************************************
consensus_8925#0 TTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGA 900
consensus_8925#1 TTGAAATTCTGTTTTCACCGGGTTTAGATGTGCCCAAAGAGAACCAAAAAAAATTCAAGA 584
************************************************************
consensus_8925#0 ACAAGTTCATCTTGACCAGTTTTGATTAGCAGCAATGACCAGTATTGCAGCCTTCCGCTA 960
consensus_8925#1 ACAAGTTTATCTTGACCAGTTTTGATTAGCAAAAAAAAAAAAAAAAAAAA---------A 635
******* *********************** ** * * * * *
consensus_8925#0 ATAACTGTGACCNGGAGGCATTGCTGGTTGCTGCTAGCCTGCTACTCACTCACAACACGT 1020
consensus_8925#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTC---CGTAGCGTAT 692
* ** * * * * ** * *** ** * * * *
consensus_8925#0 CACATTTGATGGGATCTATGACGATCATGCAATTCGCTACAAAGATTTCACCTATGATAT 1080
consensus_8925#1 CG---TTGACAG---CAGGGGCAAATTCGGGGCCGTTAAATTAAATTCCCCCTA------ 740
* **** * * * * * * * * *** * ****
consensus_8925#0 GTAAACTTTTGTTGTTCTGCTCCAATCCTAGCAATTTAGTGCTAAAAAAAAAAAAAAAAA 1140
consensus_8925#1 ------------------------------------------------------------
consensus_8925#0 AAA 1143
consensus_8925#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||