These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1840 fasta sequence [ATTGCCCTCCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAGCGAGCGGAGCGGAGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCCTACCAAGTAAGAGAGTAATGGACAGACCCTCTTTTGGTGTTCACAGGGCGGAGTCTTCCCATCAGCATATGATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTGAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTACAATCACAGTTGCAAAATCATCCAGCCGAACTTTGGGAGGATGGCATGAGGGACTACATATCCCATGCTTCTGAAATAATGGAAAAATTCAAGGATGTTGTCAATTGGATTAAGCAAAATAAAACAGGTTCAGCAGTGGTGTTGTCCCCAGGTCCACCCAATGATGAGAAGACTATTTCGCCGGCAGCTGTAGACAGCAAGTTTACG-GTTCAATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCAGCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCAGCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGTCTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCCATTTTTTCTGCTTCGGGTGCCCAGAGTTTTAGCATGCCATCCCAGACACTGTTTTCAGTTAACCAACAGCCAGCTATCTCAGGAAATAAAAGTGCAGCTGAAGCTTCAGGTGATGCAGATGAAGATGCTGAACCTGAACAACCTAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAAGGAATCGTTGTTGTTTATGAAGCCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCAC-TTTAAACCGTGAGTAATGCAGTGCTTGGGGACACTTGTAGCCAACTTAAACTGCGGCGAGCCAAAAGATGCCTTGCACAGTTTTTTGCCCTCCCAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGCTCGTGAGCTGGCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAAATCAGATGGTTGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATCGATGTGCTACTATGTGCAAACACATTCTCCGGTGTAAAACATCGCCGTATGCCGTTAAATTTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGGAGAGGTAGGAGGTTTCAGGAATATGAAATTTGAAATCGCGCTGAAAAAAAAGG] [+] EMBL CB623638 [ATTGCCCTCCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGCGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAGCGAGCGGAGCGGAGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCCTACCAAGTAAGAGAGTAATGGACAGACCCTCTTTTGGTGTTCACAGGGCGGAGTCTTCCCATCAGCATATGATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTGAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTACAATCACAGTTGCAAAATCATCCAGCCGAACTTTGGGAGGATGGCATGAGGGACTACATATCCCATGCTTCTGAAATAATGGAAAAATTCAAGGATGTTGTCAATTGGATTAAGCAAAATAAAACAGGTTCAGCAGTGGTGTTGTCCCCAGGTCCACCCAATGATGAGAAGACTATTTCGCCGGCAGCTGTAGACAGCAAGTTTACG GTTCAATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCAGCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCAGCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGTCTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCC ] [+] EMBL CB668905 [ TTTACGCGTTCCATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCAGCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCAGCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGTTTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCCATTTTTTCTGCTTCGGGTGCCCAGAGTTTTAGCATGCCATCCCAGACACTGTTTTCAGTTAACCAACAGCCAGCTATCTCAGGAAATAAAAGTGCAGCTGAAGCTTCAGGTGATGCAGATGAAGATGCTGAACCTGAACAACCTAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAAGGAATCGTTGTTGTTTATGAAGCCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCACTTTTAAACCGTGAGTAAT ] [+] EMBL CA999325 [ CCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGATGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCAC TTTAAACCGTGAG ] [-] EMBL CB668906 [ CCTGCCAATGGTTGGAAAGATATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTCTATGGGTTAAAGCAC TTTAAACCGTGAGTAATGCAGTGCTTGGGGACACTTGTAGCCAACTTAAACTGCGG ] [-] EMBL CB623639 [ TGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAGTCCACTCCAACTATTGTTATTAGAAAGGATGTGGGCAAAATTCTTGTGAATGCTCTGATCTATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCAGATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTGGTAGCTCGAACATACTTGATCAGGGTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTGGAATGATTCTTGTATGGGTTAAAGCAC TTTAAACCGTGAGTAATGCAGTGCTGGGGGACACTTGTAGCCAACTTAAACTGCGGCGAGCCAAAAGATGCCTTGCACAGTTTTTTGCCCTCCCAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGCTCGTGAGCTGGCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAAATCAGATGGTTGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATCGATGTGCTACTATGTGCAAACACATTCTCCGGTGTAAAACATCGCCGTATGCCGTTAAATTTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGGAGAGGTAGGAGGTTTCAGGAATATGAAATTTGAAATCGCGCTGAAAAAAAAGG] consensusID : consensus_8927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [NCCCTTGCCCACCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGGATCCCCATCCATCCCGCGAGCAAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAAAGCTGGAGGNAGNNGNCNAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCGGNGAAGTCTTCCCATCAGCATATNATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTAAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTAAATCACAGTTGAAAA] [+] EMBL AU069711 [NCCCTTGCCCACCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGGATCCCCATCCATCCCGCGAGCAAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGTGAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAAAGCTGGAGGNAGNNGNCNAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCGGNGAAGTCTTCCCATCAGCATATNATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCATGTAAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTAAATCACAGTTGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8927#0 ---ATTGCCCTCCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGGCGATCCCCATCCA 57 consensus_8927#1 NCCCTTGCCCACCGCTGTGCCGCCGCCGCCGCCACCGCCGCCTCCGG-GATCCCCATCCA 59 ****** ************************************ ************ consensus_8927#0 TCCCGCGAGCGAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGT 117 consensus_8927#1 TCCCGCGAGCAAGCAGGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCACCCTGGT 119 ********** ************************************************* consensus_8927#0 GAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAAGCGAGCGGA 177 consensus_8927#1 GAGCACATCCTCCGCCACCACCCCCTGCTCCGATCCCCATCCATCGCGCAA--AAGCTGG 177 *************************************************** *** * consensus_8927#0 GCGGAGCGAGCGAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCCTACCA 237 consensus_8927#1 AGGNAGNNGNCNAGCAGGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCC------ 231 * ** * ****************************************** consensus_8927#0 AGTAAGAGAGTAATGGACAGACCCTCTTTTGGTGTTCACAGGGCGGAGTCTTCCCATCAG 297 consensus_8927#1 -----------------------------------------GGNGAAGTCTTCCCATCAG 250 ** * ************** consensus_8927#0 CATATGATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCAT 357 consensus_8927#1 CATATNATGGCAGGACCCGCTACTTTAGATCCTCAGCGGGCTGAAGCGGCAAACAAGCAT 310 ***** ****************************************************** consensus_8927#0 GTGAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTACAATCACAGTTGCAAAATCATCCA 417 consensus_8927#1 GTAAGAGCACTCAATAGCCAGTTTGCTAGCTGGGTA-AATCACAGTTGAAAA-------- 361 ** ********************************* *********** *** consensus_8927#0 GCCGAACTTTGGGAGGATGGCATGAGGGACTACATATCCCATGCTTCTGAAATAATGGAA 477 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 AAATTCAAGGATGTTGTCAATTGGATTAAGCAAAATAAAACAGGTTCAGCAGTGGTGTTG 537 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TCCCCAGGTCCACCCAATGATGAGAAGACTATTTCGCCGGCAGCTGTAGACAGCAAGTTT 597 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 ACGGTTCAATCAAGCCCAGATAATGGGCAGAAAGGTCCAGTTACAGCAGCTAGCTCCCCA 657 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GCATTTCAGAATTCAAGTTCACCGAACTTGTTTTCGTTCGCTTCTCATCAAAAAACGCCA 717 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GCCTTTACTGGCATTTTTGGTGACAAGAAAAACATGCCTGGTGATAGCAACAAACCGAGT 777 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 CTCCAGTTTGGTGCAAATAATGGCTTTTCAACACCAAGCATGCCATCCATTTTTTCTGCT 837 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TCGGGTGCCCAGAGTTTTAGCATGCCATCCCAGACACTGTTTTCAGTTAACCAACAGCCA 897 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GCTATCTCAGGAAATAAAAGTGCAGCTGAAGCTTCAGGTGATGCAGATGAAGATGCTGAA 957 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 CCTGAACAACCTAGCAGCCCTTCTGTAAAGAAGGCAGAAGAGAAAGGAATCGTTGTTGTT 1017 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TATGAAGCCAAATGCAAGGTGTATGTTAAGCATGATGATCCTGCCAATGGTTGGAAAGAT 1077 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 ATTGGTGTTGGCCAGCTCAACATTAGGTGTAAAGAGGGTGCCGAGAAAGCTTCCAAAGAG 1137 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TCCACTCCAACTATTGTTATTAGAAACGATGTGGGCAAAATTCTTCTGAATGCTCTGATC 1197 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TATAAGGGGATAAAGATGAATGTTAAAAAGAGCACGGTTGCTTCGATATTCCATACCTCA 1257 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GATGGACAGCCAAGTGAATCTGGCAGTGCTACAGTTGTAGCTCGAACATACTTGATCAGG 1317 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GTGAAAAATGATGAGGCGGCTGCAAAGTTGTCAGCAGCAATTATGGAGAATGCGCCATTG 1377 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GAATGATTCTTCTATGGGTTAAAGCACTTTAAACCGTGAGTAATGCAGTGCTTGGGGACA 1437 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 CTTGTAGCCAACTTAAACTGCGGCGAGCCAAAAGATGCCTTGCACAGTTTTTTGCCCTCC 1497 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 CAATTGCAGAGCAAAGTGCACGGAGAAAAAAAAATCCGTGTTGCTCTTGCTCGTGAGCTG 1557 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GCCAGCCATGTACTATTATTTATCGGCCATGTAGTAAGGTCACCTTTAGTTATGGCACAA 1617 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 ATCAGATGGTTGAACACCTGGGGGCTGCTAGCCTTGCTAGTCTTCAGACTTGGTGCAATC 1677 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GATGTGCTACTATGTGCAAACACATTCTCCGGTGTAAAACATCGCCGTATGCCGTTAAAT 1737 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 TTTTGTACCATTTGTTAAATTCATTTCTATCTTTTGACTCTTCCTACAGGAGAGGTAGGA 1797 consensus_8927#1 ------------------------------------------------------------ consensus_8927#0 GGTTTCAGGAATATGAAATTTGAAATCGCGCTGAAAAAAAAGG 1840 consensus_8927#1 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||