These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1594 fasta sequence [AATTTGCTTTCTTAGTTTCTTCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTCCGGAAAAAATGCATCATATATACAGTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAG-AAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCTTCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCGAGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTCTGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAAGTCGGAGATCTTGGGGTTCATGTCTCCGTCGAGCAGGATGTTGCCGGCCTTGAGATCCCTGTGGATGATCTTGAACCGGGAGTCCTGGTGCAGATACAGGAGGCCCCGTGCGATGCCGAGTATGATGTTAAATCGCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCTTGTTCTCCATGTACTCGTACACCAGCATCCTCTCCTCGCCATGGATGCAGCAGCCGAGAAGCCTGACAAGGTTCACATGCTGGAGCCTCGCGATGAGCATGACCTCGTTCTTGAACTCGTCCAGCCCCTGCGTCGAGAATTTGGACAGCCTCTTCACTGCCACTGTCTGCCCTCCATCCAATTCTCCCTTGTAGACAGGACCAAAACCACCTTCACCGAGCTTAGCCAAGTTCGCGAAATTGTCAGTGGAGAAGGCTATCGTGTTGAAGTCAAAGAGAGTGACATTCAATTCGTTGCTGTGCCTGGTTTCATCCTCCATTTTCCTGTCTTGGACTTGATTCAGAGGGATACTTGAGTCAAATGAGGTGAACCTTTGAGGACTCTGAAATCTCACTTTGTTTCTGAATAACTTGTCCCAGACGAAGAATGCAGCCAACGCCAGAAGAACAACACCAGATAGGCTTAGGACAACAGCGAGCACTGTGTTTTTCCTGCTGGAATCATCCCCATTGGTTGGCAAATCGGATGCGGCGAGACGCATGAACAGGTCCTCGCCGCCATAGGAGAACTTCCTGATGTCCACGAGCGGCGAGCTCCACATGATGCAGCCGCTCCCGCCTCCCCTGACGTCGGACGCGGCGTACGCCACGCAGGAGCAGTTGGCCAGGCACCTCGCCCTGCATTGATGGACGGC] [+] EMBL CB649022 [AATTTGCTTTCTTAGTTTCTTCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTCCGGAAAAAATGCATCATATATACAGTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAG AAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCATCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCTTCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCGAGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTCTGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAA ] [+] EMBL CB649020 [ TTTCTTAGTTTCCCCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTCCGGAAAAAATGCATCATATATACAGCACCCTGAACTTTGCTGATGCTGGAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACCGTGCACTGGTCACCGGCCTTCAACGATGGTGACGGTGACGTCTTTGACGGTGCAGGTGGACGACCACTCACCGTCGGGCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAA AAGCCCGGGTGCCTCCGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACTCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGGTCGACAGCTCCCCGCTGCTGTACATCCCGCGGTTCTTCCGGGCGCTGACGAa ] [+] EMBL CB670838 [ CTGAACTTTGCTGATGCTGTAACGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAG AAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCTTCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCGAGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTCTGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAAGTCGGAGATCTTGGGGTTCATGTCTCCGTCGAGCAGGATGTTGCCGGCCTTGAGATCCCTGTGGATGATCTTGAACCGGGAGTCCTGGTGCAGATACAGGAGGCCCCGTGCGATGCCGAGTATGATGTTAAATCGCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCTTGTTCTCCATG ] [-] EMBL C26734 [ nCACTCGCCGTNGGTCGAACCGCCGCCGNCGNCGCGGTCGCTGCAGAAAGCCCGGGTGCCTAGCCT CGGCACCANCGCGCTGAGGTTGCCCAACATCATGAACACCGCCGNCATG CTNGNCGGTCCTCCGGNCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCANCTCCGACCTGCTGTACCCCCCGCCGCCGCCGNCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCT ] [-] EMBL CB649021 [ TGATGTTAAATCGCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCTTGTTCTCCATGTACTCGTACACCAGCATCCTCTCCTCGCCATGGATGCAGCAGCCGAGAAGCCTGACAAGGTTCACATGCTGGAGCCTCGCGATGAGCATGACCTCGTTCTTGAACTCGTCCAGCCCCTGCGTCGAGAATTTGGACAGCCTCTTCACTGCCACTGTCTGCCCTCCATCCAATTCTCCCTTGTAGACAGGACCAAAACCACCTTCACCGAGCTTAGCCAAGTTCGCGAAATTGTCAGTGGAGAAGGCTATCGTGTTGAAGTCAAAGAGAGTGACATTCAATTCGTTGCTGTGCCTGGTTTCATCCTCCATTTTCCTGTCTTGGACTTGATTCAGAGGGATACTTGAGTCAAATGAGGTGAACCTTTGAGGACTCTGAAATCTCACTTTGTTTCTGAATAACTTGTCCCAGACGAAGAATGCAGCCAACGCCAGAAGAACAACACCAGATAGGCTTAGGACAACAGCGAGCACTGTGTTTTTCCTGCTGGAATCATCCCCATTGGTTGGCAAATCGGATGCGGCGAGACGCATGAACAGGTCCTCGCCGCCATAGGAGAACTTCCTGATGTCCACGAGCGGCGAGCTCCACATGATGCAGCCGCTCCCGCCTCCCCTGACGTCGGACGCGGCGTACGCCACGCAGGAGCAGTTGGCCAGGCACCTCGCCCTGCATTGATGGACGGC] consensusID : consensus_8928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [TTTTTTTTTTTTTTTTTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGC] [-] EMBL AU077945 [TTTTTTTTTTTTTTTTTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTGATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGACGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGCCGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGCTGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCTGCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGCCGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGGCGTTGCCCTCCCTCCACAGCCTCCACGCGTGGCTGAGCAGGCTCGTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8928#0 AATTTGCTTTCTTAGTTTCTTCCTTATATTTTGGTGTGCAATTAATTCTTTTGCGTGTTC 60 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 CGGAAAAAATGCATCATATATACAGTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTG 120 consensus_8928#1 ---------TTTTTTTTTTTTTTTTTAGCCTGAACTTTGCTGATGCTGTAATGTAATGTG 51 * * * * * *********************************** consensus_8928#0 ATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGA 180 consensus_8928#1 ATTTAATTTACATTTTTACTCCACAAAGTTCGGTACAGTGCACTGGTCACCGGCCTTCGA 111 ************************************************************ consensus_8928#0 CGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGC 240 consensus_8928#1 CGATGGTGACGGTGACGTCGTTGACGGTGCAGGTGGACGACCACTCGCCGTCGGTCGAGC 171 ************************************************************ consensus_8928#0 CGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGC 300 consensus_8928#1 CGCCGCCGCCGCCGCGGTCGCTGCAGAAGCCCGGGTGCCTCGGCTGCGGCACCACCGCGC 231 ************************************************************ consensus_8928#0 TGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCT 360 consensus_8928#1 TGAGGTTGCCCAGCATCATGAACACCGCCGCCATGTGCGGCCGGTCCTCCGGCCGCTCCT 291 ************************************************************ consensus_8928#0 GCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGC 420 consensus_8928#1 GCACGCACAGGAGCCCCACCTGCACGCACCGCAGCACCTCCGACCTGCTGTACCCCCCGC 351 ************************************************************ consensus_8928#0 CGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAGCGCGTTGCCCTCCCTCCACA 480 consensus_8928#1 CGCCGCCGCCGCCGGCCACCGCCTCGTCGAGCAGCGCCAG-GCGTTGCCCTCCCTCCACA 410 **************************************** ******************* consensus_8928#0 GCCTCCACGCGTGGCTGAGCAGGCTCGTCTGCTCGCCGCTGCTGTACATCCCGCGGTTCT 540 consensus_8928#1 GCCTCCACGCGTGGCTGAGCAGGCTCGTCTGC---------------------------- 442 ******************************** consensus_8928#0 TCCGGCCGCTGACGAGCTCCAGCACCAGCACGCCGAAGCTGAACACGTCGGACTTCACCG 600 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 AGAACACGCCGTCCATCGCGTACTCCGGCGACATGTACCCATATGTCCCGACGACTTTTC 660 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGGTGTGCGAGTCGGTGTCGTCGCCGAAGATCCTCGCGACGCCGAAGTCGGAGATCTTGG 720 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 GGTTCATGTCTCCGTCGAGCAGGATGTTGCCGGCCTTGAGATCCCTGTGGATGATCTTGA 780 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 ACCGGGAGTCCTGGTGCAGATACAGGAGGCCCCGTGCGATGCCGAGTATGATGTTAAATC 840 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 GCTTCGACCAGTTCAGCTGAGCTGATCGAGCCTTGTCGAAGATGAAGTTGTCGAGGCTCT 900 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGTTCTCCATGTACTCGTACACCAGCATCCTCTCCTCGCCATGGATGCAGCAGCCGAGAA 960 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 GCCTGACAAGGTTCACATGCTGGAGCCTCGCGATGAGCATGACCTCGTTCTTGAACTCGT 1020 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 CCAGCCCCTGCGTCGAGAATTTGGACAGCCTCTTCACTGCCACTGTCTGCCCTCCATCCA 1080 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 ATTCTCCCTTGTAGACAGGACCAAAACCACCTTCACCGAGCTTAGCCAAGTTCGCGAAAT 1140 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGTCAGTGGAGAAGGCTATCGTGTTGAAGTCAAAGAGAGTGACATTCAATTCGTTGCTGT 1200 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 GCCTGGTTTCATCCTCCATTTTCCTGTCTTGGACTTGATTCAGAGGGATACTTGAGTCAA 1260 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 ATGAGGTGAACCTTTGAGGACTCTGAAATCTCACTTTGTTTCTGAATAACTTGTCCCAGA 1320 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 CGAAGAATGCAGCCAACGCCAGAAGAACAACACCAGATAGGCTTAGGACAACAGCGAGCA 1380 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 CTGTGTTTTTCCTGCTGGAATCATCCCCATTGGTTGGCAAATCGGATGCGGCGAGACGCA 1440 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGAACAGGTCCTCGCCGCCATAGGAGAACTTCCTGATGTCCACGAGCGGCGAGCTCCACA 1500 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGATGCAGCCGCTCCCGCCTCCCCTGACGTCGGACGCGGCGTACGCCACGCAGGAGCAGT 1560 consensus_8928#1 ------------------------------------------------------------ consensus_8928#0 TGGCCAGGCACCTCGCCCTGCATTGATGGACGGC 1594 consensus_8928#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||