These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1624 fasta sequence [TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCATAGAAATTGCCACCATTTGTTTATTTCCCTCAGGATATTATGAAAATATGGCTGCTTTTTTATGGGGCCTTCAAAACTGTTAAAGATGTTAATTTAATGGTGATTACCCCTTTCCCATAATGGAGTCAAATAGGTTTATCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK073215 [TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGGGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCATAGAAATTGCCACCAT ] [+] EMBL AK099084 [TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGGTCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGAT ] [+] EMBL AK106542 [ CACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCGAGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCTGCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCGAATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTGTTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTGGAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCTCACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTTCTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAACTAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGACAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTGTATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATGCAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGT TATGCTGCTGATTCCAAGGGTTTTATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCATAGAAATTGCCACCATTTGTT ] [+] EMBL CB000234 [ TGCTATAGATGCAAATGTGCAATCTGGTGGACTGTTTTCTTCTGCTACTGTGGGATCTGGGACACCTAGTCACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTGAACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCTGAGTGCCATGACAAGAAAAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGGACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGCTGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAGAGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGA ] [-] EMBL CF303705 [ TTTAAACCCCCCTTGTATTTCTTTTCTTCCCCCTTTTTGTGGGGCTTTTTTGGTGGCTGAAATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGGGCATGTTTATGTAACTATAATGCTATAAAATATCCTTTTTGTTATTTACCCCTGATGAGAAATCATAGAAATTGCCCCCATTTGTTTATTTCCCTCAGGATATTATGAAAATATGGCTGCTTTTTTATGGGGCCTTCAAAACTGTTAAAGATGTTAATTTAATGGTGATTACCCCTTTCCCATAATGGAGTCAAATAGGTTTATCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [AAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGTTGCTATACATGCCATGATTGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTCTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTC] [+] EMBL CB631550 [AAAAATCATCAAGAATGGATCCTACAAAGATCTTACTTGCATTGTTGCTATACATGCCATGATTGGGATACTTTATTACCGTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTGAGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATACCCTCCTTGTATTTCTTTTCTTCTCCCTTTTTCTGGGGCTTTCTTGGTGGCTGAGATGGGTAGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGTTTATGTAACTATAATGCTATAAAATATCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8942#0 TCACCCGCCCACGGATCCGATCCGCCTCCACTCCCTCCCCCACCGGCGGGCGGCCGCCCG 60 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 AGCGGCGCGGTGCTCCTCCTCCCTCCTCGTCGTCGTCGTCGGCGCCGGCGATGGTCGTCT 120 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 GCAAATGCCGCAAGGCGACAAGGGTTTATTGCTTCGTGCACAAGGTTCCTGTCTGCGGCG 180 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 AATGCATCTGCTTCCCGGAGCATCAGTTATGCGTGGTTAAAAATTATGCTGAATGGGTTG 240 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 TTAATCCTGATTATGACTGGCCACAACACTGTTCATCTTGCAATTCTGTTCTGGAAGCTG 300 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 GAAGCGAAGAAACTACACGATTGGGTTGCTTGCATGTGATGCACACAAGATGTTTGATCT 360 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 CACACATACAAAGTTATTCAACCCAAACTGCACCAGCTGGATATGTTTGTCCTTCATGTT 420 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 CTACACCTATATGGCCTCCTTCAACTATTAAAGATACTGGCTCGCGCCTTCACTCTAAAC 480 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 TAAAGGAAGCAATAGCCCAGACTGGATTGGAGAAGAACGTATTTGGAAATCATTTTGTGA 540 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 CAATGCCTAAAGCTGATACTCGCACCCCTCCTGCTTTTGCTTCAGATCCTCTTAAACGTG 600 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 TATCCATTTCTGGTGATAGAGAATCAAATGGTGCAAACATAATCAATTCTGCTATAGATG 660 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 CAAATGTGCAATCTGGTGGAATGTATTCTTCTGCTACTGTGGGATCTGGGACACCTAGTC 720 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 ACGTTGAACCAGAAATAGTTGAAATAGATGGTCCAAGTCCAATAACAACTCAGTTCCCTG 780 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 AACAGGAGTCCAACTTCATCAGAAGTCCTAGCCCACATGGGCCGAGTGCCATGACAAGAA 840 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 AAGGTGCTAACTATGTTGAGAGACAAAATTCAGAGATTTCTTATTATGCTGATGATGAGG 900 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 ACGCAAACCGCAAGAAGTATACCAAAAGGGGTACATTCCGTCACAAATTTCTAAGGATGC 960 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 TGCTACCTTTCTGGTCCAGTGCATTGCCAACACTGCCAGTTACAGCACCTCCTAGAAAAG 1020 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 AGAGTGATGCTCCAGAGGGCCGTTCACGACATCAAAAATCATCAAGAATGGATCCTACAA 1080 consensus_8942#1 ---------------------------------AAAAATCATCAAGAATGGATCCTACAA 27 *************************** consensus_8942#0 AGATCTTACTTGCATTGGCGATCATGGCATGTATAGCAACAATGGGGATACTTTATTACC 1140 consensus_8942#1 AGATCTTACTTGCATTG------TTGCTATACAT-GCCATGATTGGGATACTTTATTACC 80 ***************** ** ** ** ** * ** **************** consensus_8942#0 GTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTG 1200 consensus_8942#1 GTTTGACACAACGCAGTCTTTCCGAGAACTTTATTGAGGATGAACCTCAATAGTACCCTG 140 ************************************************************ consensus_8942#0 AGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTTATAC 1260 consensus_8942#1 AGGTTGTCAATCTTGCAGTTCATTCCTGGTGCTATGCTGCTGATTCCAAGGGTTTAATAC 200 ******************************************************* **** consensus_8942#0 CCTCCTTGTATTTCTTTTCTTCTCCCTTTTTGTGGGGCTTTCTTGGTGGCTGAGATGGGT 1320 consensus_8942#1 CCTCCTTGTATTTCTTTTCTTCTCCCTTTTTCTGGGGCTTTCTTGGTGGCTGAGATGGGT 260 ******************************* **************************** consensus_8942#0 AGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGT 1380 consensus_8942#1 AGTTAGATACTACATAAGAATTATAGTAGACTGCTTCCATATGATGATTGATGTGCATGT 320 ************************************************************ consensus_8942#0 TTATGTAACTATAATGCTATAAAATATCCTCTTTGTTATTTACACCTGATGAGAAATCAT 1440 consensus_8942#1 TTATGTAACTATAATGCTATAAAATATCCTC----------------------------- 351 ******************************* consensus_8942#0 AGAAATTGCCACCATTTGTTTATTTCCCTCAGGATATTATGAAAATATGGCTGCTTTTTT 1500 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 ATGGGGCCTTCAAAACTGTTAAAGATGTTAATTTAATGGTGATTACCCCTTTCCCATAAT 1560 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 GGAGTCAAATAGGTTTATCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1620 consensus_8942#1 ------------------------------------------------------------ consensus_8942#0 AAAA 1624 consensus_8942#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||