cluster # 8944

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Oryza sativa
cluster # 8944 cluster # 8944 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8944#0 length = 532 sequences # 2

consensus_8944#1 length = 475 sequences # 1
consensus_8944#2 length = 436 sequences # 3

consensusID : consensus_8944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 532
fasta sequence

                              [TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATTTTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGGGGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAATCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAATTTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT]

[+] EMBL CF316065             [TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATTTTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGGGGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAATCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAATTTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT]
[+] EMBL CF315117             [TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACGACCCACTGTTTAATTAATCGATAACCCCCGGGTTTAATTTCGCATTATTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGG GGGTTTTATTGGGGACCAATTAAGGGAGGGGACCCCCCCGGGGGGAAGGTTCGGTTGCTTTGGGAATTTACTTGCCCCACTTGC                                                                                                                                                                                                                                          ]




>consensus_8944#0
TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCT
AATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATT
TTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGG
GGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAA
TCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACC
TCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTT
ACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAAT
TTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT

consensusID : consensus_8944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CCCCAAATACCCAAATGATTAATTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAAATTTATACCTTGATACCCCCCTAATTGCCAAAACAACCCCCTTTTTAATTAATTAATAACCCCCGGGTTTAATTCAACAATAATTAACCCCCCCCCAAACCCCCCTTTTTTGGGGGGGTTTTTTTGGGGACTAATTAAGGGGGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGAATTCACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGAACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCCTTTTCCCACCTGGGCGAAAATTTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT]

[+] EMBL BI305724             [CCCCAAATACCCAAATGATTAATTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAAATTTATACCTTGATACCCCCCTAATTGCCAAAACAACCCCCTTTTTAATTAATTAATAACCCCCGGGTTTAATTCAACAATAATTAACCCCCCCCCAAACCCCCCTTTTTTGGGGGGGTTTTTTTGGGGACTAATTAAGGGGGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGAATTCACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGAACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCCTTTTCCCACCTGGGCGAAAATTTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT]




>consensus_8944#1
CCCCAAATACCCAAATGATTAATTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAA
ATTTATACCTTGATACCCCCCTAATTGCCAAAACAACCCCCTTTTTAATTAATTAATAAC
CCCCGGGTTTAATTCAACAATAATTAACCCCCCCCCAAACCCCCCTTTTTTGGGGGGGTT
TTTTTGGGGACTAATTAAGGGGGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGA
ATTCACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCG
TTTTCCTTCCCGGGGGGAACCTCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACC
CCCTAACTGGGACCTTTTTTTACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCC
TTTTCCCACCTGGGCGAAAATTTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT

consensusID : consensus_8944#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 436
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAATTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAATTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCCTAATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATTATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGGGGGTTTTATTGGGGACCAATTAAGGGGGGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAATTGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAACTCCTTGAAAGGGGTTTT]

[+] EMBL CF313340             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAATTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATTCCCCATTGGTTAATTTCCCTGGAAATAGCCCGGGGCCCTTCCATTACACAAATTCATACCTTGATACCCCCCTAATCCCCCAAACCACCCTTTTTTTAATTAAACCATAACCCCCGGGTTTAATTTCCCCATTATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGGGGGTTTTATTGGGGACCAATTAAGGGGGGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAATTGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAACTCCTTGAAAGGGGTTTT]
[+] EMBL CF316328             [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  TGAAATTCCATTGGGTTTTAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAATTTCCCTGGAAATAACCCGGGGCCCTTACATTACCCAAATTTTTTCCTTGATACCCCCCTAATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATTTTTACCCCCCCCCCCAACCCCCCTCTTTTGGGGGGGTTTTTTTGGGGACCAATTAAGGGGGGGGACCCCCCCGCGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTTCAATCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTTCCCGGGGGGGAACTCCTTAAAAGGGGT   ]
[+] EMBL CF316644             [                       TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAAATTCCATTGGGTATGAAAAACCTTTTTTCTAGGGAAACCCCCCCAATACCCCATTGGTTAATTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCATAATCCCCCAAACGACCAACTGTTTAATTAATCGATAACCCCCGGGTTTAATTCACCAATAATTAGCCCCCCC                                                                                                                                                                                        ]




>consensus_8944#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAA
TTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAA
TTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCCT
AATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATT
ATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGGGGGTTTTATTGGGGACCAATTAAGGGG
GGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAAT
TGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAACT
CCTTGAAAGGGGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8944#0      ------------------------------------------------------------
consensus_8944#1      ------------------------------------------------------------
consensus_8944#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGAAA 60
                                                                                  

consensus_8944#0      TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_8944#1      --------------------------------------CCCCAAATACCCAAATGATTAA 22
consensus_8944#2      TTCCATTGGGTATGAAAAACCTTTTTTCTTGGGAAACCCCCCCAATACCCCATTGGTTAA 120
                                                                   *       *  **  

consensus_8944#0      TTTTTTTGAAAAAAACCCGGGGCCCTTACATTACACAAATTTTTTCCTTGATACCCCCCT 120
consensus_8944#1      TTTCACTGAAAAAAACCCGGGGTCCTTACATTACACAAATTTATACCTTGATACCCCCCT 82
consensus_8944#2      TTTCCCTGGAAATAGCCCGGGGCCCTTACATTACACAAATTTTTACCTTGATACCCCCCT 180
                      ***   ** *** * ******* ******************* * ***************

consensus_8944#0      AATCCCCCAAACCACCCACTGTTTAATTAATCCATAACCCCCGGGTTTAATTTACCAATT 180
consensus_8944#1      AATTGCCAAAACAACCCCCTTTTTAATTAATTAATAACCCCCGGGTTTAATTCAACAATA 142
consensus_8944#2      AATCCCCCAAACCACCAACTGTTTAATTAATCCATAACCCCCGGGTTTAATTCACCAATT 240
                      ***  ** **** ***  ** **********  ******************* * **** 

consensus_8944#0      TTTAGCCCCCCCCCAAACCCCCCTTTTTTGGGGTGGGTTTTTTTGGGGGCCAATTAAGGG 240
consensus_8944#1      ATTAACCCCCCCCCAAACCCCCCTTTTTTGGGG-GGGTTTTTTTGGGGACTAATTAAGGG 201
consensus_8944#2      ATTAGCCCCCCCCCAAACCCCCCTCTTTTGGGG-GGGTTTTATTGGGGACCAATTAAGGG 299
                       *** ******************* ******** ******* ****** * *********

consensus_8944#0      GGGGGACCCCCCCGGGGGGAAGGTTCGGGTGCTTTTGGAATTTACTTGCCCCACTTGCAA 300
consensus_8944#1      GGGGGACCCCCCCGGGGGAAAGGTTCGGGTGCTTTCTGAATTCACTTGCCCCACTTTCAA 261
consensus_8944#2      GGGGGACTCCCCCGGGGGGAAGGTTCGGGTGCTTTTTGAATTTACTTGCCCCACTTTCAA 359
                      ******* ********** ****************  ***** ************* ***

consensus_8944#0      TCGGGGCAAGAACCATTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGGACC 360
consensus_8944#1      TCGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTCCTTCCCGGGGGGAACC 321
consensus_8944#2      TTGGGGCAAGAACAACTGGGGCCCCACTTTCAACCCCCGTTTTTCTCTCCGGGGGGGAAC 419
                      * *********** * *************************** **  ******** * *

consensus_8944#0      TCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTT 420
consensus_8944#1      TCCTTAAAAGGGGTTTTTTTGGGTTTAACTTTAAAAACCCCCTAACTGGGACCTTTTTTT 381
consensus_8944#2      TCCTTGAAAGGGGTTTT------------------------------------------- 436
                      ***** ***********                                           

consensus_8944#0      ACCCCCTGGGTTTTTTTAACACAATCCCAATTGCCCCACTTTTCCCACATGGGCCAAAAT 480
consensus_8944#1      ACCCCCTGGGTTTTTTCAACACAATCCCAATTGCCCCCCTTTTCCCACCTGGGCGAAAAT 441
consensus_8944#2      ------------------------------------------------------------
                                                                                  

consensus_8944#0      TTAATTACCCTAGGGGGGGGGGAGTTAATCCCCTGGGGGGGTTATGCCTTTT 532
consensus_8944#1      TTAATTTCCTAAGGGAGGGAAAAATTAATCCCTT------------------ 475
consensus_8944#2      ----------------------------------------------------