These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [TGTTTGTCTTGGGGGCTACAATGCCCTGAGGTTGAGCTTTCTTTTCTTTAATTTGAGCCATTTGTTTCTGCCTCACAGAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAATTTCATAGCATTTTTTTTATGTTCCATTTGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAAAATGCTGGTCTAGTTAAGTGTTTTTAGTGCATACCCAGTAAGCCAGGATTTGTTCACAAACTGGTCTGCAGGTATCCACAGCTCTTCTTCCTGTGATCAACTCAAGTAGAAAAACCCCAAAACTATAGACATCAGTCTTGGTACTTAGCATGCCTGTTCTTACGTATTCTGGAGCACAGTACCCAAATGTGCCCATCACCCTAGTTGAGACATGT] [+] EMBL CB672139 [TGTTTGTCTTGGGGGCTACAATGCCCTGAGGTTGAGCTTTCTTTTCTTTAATTTGAGCCATTTGTTTCTGCCTCACAGAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAATTTCATAGCATTTTTTTTATGTTCCATTTGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAAAATGCTGGTCTAGTTAAGTGTTTTTAGTGCATACCCAGTAAGCCAGGATTTGTTCACAAACTGGTCTGCAGGTATCCACAGCTCTTCTTCCTGTGATCAACTCAAGTAGAAAAACCCCAAAACTATAGACATCAGTCTTGGTACTTAGCATGCCTGTTCTTACGTATTCTGGAGCACAGTACCCAAATGTGCCCATCACCCTAGTTGAGACATGT] consensusID : consensus_8954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [TGAATCAGTGAACAATTTGAGACAGGTGAGCTGATTTTATATGAAGAATGTTTGCCACTAATCGTTATTGTGTATACCTGGCCATTTTCAAGCTGTCCCTTGTAGACCCTGCCAAAGCCCCCCTCTCCCAGAAGACGGTCAGAACGGAAGTTATTGGTGGCTGTCGCTAGCTCACGGAACGTGAATTTTTTTCCAGTTCTGGCAGTAACTGGGCTTCCATTGTGTGGTTCAGTATTTGCTGCTGCTTCAGATGATTGCTTGTGGTCTGAGGAGACACATGGCAACTTTTCCGATTCTGCAGTGGCTTGAAGCATGAAAAGCAGCTCATCTTCGTCAATAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCAGGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTGGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAAAAAGA] [-] EMBL CB660916 [TGAATCAGTGAACAATTTGAGACAGGTGAGCTGATTTTATATGAAGAATGTTTGCCACTAATCGTTATTGTGTATACCTGGCCATTTTCAAGCTGTCCCTTGTAGACCCTGCCAAAGCCCCCCTCTCCCAGAAGACGGTCAGAACGGAAGTTATTGGTGGCTGTCGCTAGCTCACGGAACGTGAATTTTTTTCCAGTTCTGGCAGTAACTGGGCTTCCATTGTGTGGTTCAGTATTTGCTGCTGCTTCAGATGATTGCTTGTGGTCTGAGGAGACACATGGCAACTTTTCCGATTCTGCAGTGGCTTGAAGCATGAAAAGCAGCTCATCTTCGTCAATAGCCCCATTCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCAGGGTACCTCCTCCGATCATGAAGCATGGGTTTGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTGGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAAAAAGA] consensusID : consensus_8954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 655 fasta sequence [TCTGAGAGACCCAAACTTGTTNAAGATGGGACCGTACTAGTGAGATAAGAAGAATGATAATTGCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTT-TGG-AAGCCACGGTATCTGATATGTATAACTTGGGGAGAGCCCCATT-CGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC-ATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG-GCCTGTTGACCACAAAC-AATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATC-AAAATTTCATAGCATTTTTTTTA------AAAAAAAAATGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAATGCTGGTCTACTTNAGTGTTTTTAGTGCATACCCAGTAAAAAA] [+] EMBL BM038194 [TCTGAGAGACCCAAACTTGTTNAAGATGGGACCGTACTAGTGAGATAAGAAGAATGATAATTGCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTT TGG AAGCCA GGTATCTGATATGTATAACTTGGGGAGAGCCCCATT CGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC ATGCAACAAC ATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCAT GCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG GCCTGTTGACCACAGAC AATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATC AAAATTTCCCCCCANTTTTTTTACTGTTCAAAAAAAAA ] [+] EMBL BI811676 [ AGATAAGAAGAATGATAATTGCCGCGAGCTCTTCAAAGAGGAGTGAAACTATTATTTGTGG AAGCCACGGTATCTGATATGTATAACTTGGGGAGAGCCCCATT CGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC ATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG GCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTTGACTAATTACTATCAAAAATTTCATAGCATTTTTTTTA AAAAAAAAA ] [+] EMBL BM422021 [ AGAGGAGTGAAACTATTATTT TGGAAAGCCCAGGTATCTGATATGTATAACTTGGGGAGAGCCCCATTGCGATGGCCTCAGCAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTGCNCCTGTTGACCACACAC AATTCCATGATCAGAAACTTTGTAGAAGGGCATCTTATTNGACTAATTACTATC AAAATTTCATAGCATTTTTTTTA TGTTCCATTTGTTTGAATTATATGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAATGCTGGTCTACTTNAGTGTTTTTAGTGCATACCCAGTAAAAAA] [+] EMBL BI813746 [ CGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAGGATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTACTTCTGCGAGGAATCCC ATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTTCATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGTCACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTTTG GCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGCCAaaaaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8954#0 ------------------------------------------------------------ consensus_8954#2 ------------------------------------------------------------ consensus_8954#1 TGAATCAGTGAACAATTTGAGACAGGTGAGCTGATTTTATATGAAGAATGTTTGCCACTA 60 consensus_8954#0 ------------------------------------------------------------ consensus_8954#2 ------------------------------------------------------------ consensus_8954#1 ATCGTTATTGTGTATACCTGGCCATTTTCAAGCTGTCCCTTGTAGACCCTGCCAAAGCCC 120 consensus_8954#0 ------------------------------------------------------------ consensus_8954#2 ------------------------------------------------------------ consensus_8954#1 CCCTCTCCCAGAAGACGGTCAGAACGGAAGTTATTGGTGGCTGTCGCTAGCTCACGGAAC 180 consensus_8954#0 ------------------------------------------------------------ consensus_8954#2 --------------TCTGAGAGACCCAAACTTGTTNAAGATGGGACCGTACTAGTGAGAT 46 consensus_8954#1 GTGAATTTTTTTCCAGTTCTGGCAGTAACTGGGCTTCCATTGTGTGGTTCAGTATTTGCT 240 consensus_8954#0 -----------TGTTTGTCTTGGGGGCTACAATGCCCTGAGGTTGAGCTTTCTTTTCTTT 49 consensus_8954#2 AAGAAGAATGATAATTGCCGCGAGCTCTTCAAAG----AGGAGTGAAACTATTATTTTGG 102 consensus_8954#1 GCTGCTTCAGATGATTG-CTTGTGGTCTGAGGAGACACATGGCAACTTTTCCGATTCTGC 299 * *** * * * ** * * * ** * consensus_8954#0 AAT---TTGAGCCATTTGT--T---TCTGCCTCAC--AGAGCCCCATTCGATGGCCTCAG 99 consensus_8954#2 AAG---CCACGGTATCTGA--TATGTATAACTTGGGGAGAGCCCCATTCGATGGCCTCAG 157 consensus_8954#1 AGTGGCTTGAAGCATGAAAAGCAGCTCATCTTCGTCAATAGCCCCATTCGATGGCCTCAG 359 * ** * * * ********************* consensus_8954#0 CAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAG 159 consensus_8954#2 CAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAG 217 consensus_8954#1 CAACTGCTCGTTGACGGTCAAATGTGCTTTGATCTTTCTTGGTGTTACCAGTTACTGAAG 419 ************************************************************ consensus_8954#0 GATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTA 219 consensus_8954#2 GATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTA 277 consensus_8954#1 GATCTTCATCCTTTCTGTTCTGGGGTTCAGCGTTAATCCTCTCTTCACAACCTGCGGGTA 479 ************************************************************ consensus_8954#0 CTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTT 279 consensus_8954#2 CTTCTGCGAGGAATCCCA-TGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTT 336 consensus_8954#1 CTTCTGCGAGGAATCCCAATGCAACAACAATGTCACTCATATATGGCCGAACTGAGGCTT 539 ****************** ***************************************** consensus_8954#0 CATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGT 339 consensus_8954#2 CATCTTCTATGCATATCGCTGCCATGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGT 396 consensus_8954#1 CATCTTCTATGCATATCGCTGCCACGGCCGCAGCTTGGTTAAAATCTTTGTCTGGATAGT 599 ************************ *********************************** consensus_8954#0 CACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTT 399 consensus_8954#2 CACCTCTAAGAAGAGGGTCTACCAGCTCATGGTACCTCCTCCGATCATGAAGCATGGGTT 456 consensus_8954#1 CACCTCTAAGAAGAGGGTCTACCAGCTCAGGGTACCTCCTCCGATCATGAAGCATGGGTT 659 ***************************** ****************************** consensus_8954#0 TGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTT 459 consensus_8954#2 TGGCCTGTTGACCACAAACAA-TTCAATGATCAGAAACTTTGTAGAAGGGCATCTTATTT 515 consensus_8954#1 TGGCCTGTTGACCACAAACAAATTCAATGATCAGAAACTTGGTAGAAGGGCATCTTATTT 719 ********************* ****************** ******************* consensus_8954#0 GACTAATTACTATCAAAAATTTCATAGCATTTTTTTTATGTTCCATTTGTTTGAATTATA 519 consensus_8954#2 GACTAATTACTATCAAAA-TTTCATAGCATTTTTTTTAAAAAAAAAATGTTTGAATTATA 574 consensus_8954#1 GACTAATTACTATCAAAAAAAAGA------------------------------------ 743 ****************** * consensus_8954#0 TGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAAAATGCTGGTCTAGTTAAGTGTT 579 consensus_8954#2 TGACCAAGTTATAGAAGTGGTTGTACTCTGATAAAAAA--TGCTGGTCTACTTNAGTGTT 632 consensus_8954#1 ------------------------------------------------------------ consensus_8954#0 TTTAGTGCATACCCAGTAAGCCAGGATTTGTTCACAAACTGGTCTGCAGGTATCCACAGC 639 consensus_8954#2 TTTAGTGCATACCCAGTAAAAAA------------------------------------- 655 consensus_8954#1 ------------------------------------------------------------ consensus_8954#0 TCTTCTTCCTGTGATCAACTCAAGTAGAAAAACCCCAAAACTATAGACATCAGTCTTGGT 699 consensus_8954#2 ------------------------------------------------------------ consensus_8954#1 ------------------------------------------------------------ consensus_8954#0 ACTTAGCATGCCTGTTCTTACGTATTCTGGAGCACAGTACCCAAATGTGCCCATCACCCT 759 consensus_8954#2 ------------------------------------------------------------ consensus_8954#1 ------------------------------------------------------------ consensus_8954#0 AGTTGAGACATGT 772 consensus_8954#2 ------------- consensus_8954#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||