These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 881 fasta sequence [TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACATTTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCCAAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTAGGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCGAAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACCGCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGTCTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGCATCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGAACAGCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTCAGAACAGCGATGGCGAGGTCCGCGTTCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACTGAGAGGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCGACGGTTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTCCCTCTCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA] [+] EMBL CF313726 [TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACATTTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCCAAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTAGGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCGAAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACCGCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGTCTCCGGGCCGGGATCAAGGAATCGACG ] [-] EMBL CF313727 [ CACCGCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGAACAGCGGTGACAGTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCCGGTCTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGCATCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGAACAGCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTCAGAACAGCGATGGCGAGGTCCGCGTTCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACTGAGAGGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCGACGGTTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTCCCTCTCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA] consensusID : consensus_8956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 594 fasta sequence [CCGCGAAGACATCTCANGTATGTAATGTGCTTTTGCCCTCTTTTACGATGTACTAAACGGGTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC] [-] EMBL CB638964 [CCGCGAAGACATCTCANGTATGTAATGTGCTTTTGCCCTCTTTTACGATGTACTAAACGGGTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCT ] [-] EMBL CB638963 [ CGGGTGGAAATGCCTTTTGGGCTTTGGCTCAGCGATGGCTCGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCCTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC] [-] EMBL CB637207 [ CGGCACGGTGGCCAGGCAGCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCT ] [-] EMBL CB639272 [ GGGCGACGATGACGACCACTATCCGGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGAAGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTGGGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCCTGAGATCCACCGGATTGACGGGAACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCCGTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACTGAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCGACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8956#0 TTTTTTTTTGCACTAGATTCACACTTTCATCTTAAGCATGGACATACATAGCAAACACAT 60 consensus_8956#1 ------------------------------------------------------------ consensus_8956#0 TTAAGACGAAAGGGACTTGAAGACTTACATCAACCTAATAGTTACATAGGCCGACCGGCC 120 consensus_8956#1 ------------------------------------------------------------ consensus_8956#0 AAATATATATATGAGAGAACAACGGAAACTTGTCTACCCAAACCACAAGCACACCGATTA 180 consensus_8956#1 ------------------------------------------------------------ consensus_8956#0 GGGGTTTACCCCCATTAAGTTCAAGTCCTAGAAGAAGCAGACGATTACCCGCGTCACTCG 240 consensus_8956#1 --------------------------------------------------------CCGC 4 * consensus_8956#0 AAAGACTAAGTCTAAGACCTTGTAACTGGAAAATGTCAGCACCTAAATCACTTCTTCACC 300 consensus_8956#1 GAAGAC---ATCTCANGTAT-GTAATGTGCTTTTGCCCTCTTTTACGATG-TACTAAACG 59 ***** *** * * **** * ** * * ** * ** ** consensus_8956#0 GCTTAAGAAATTATCGAAGCTTGATCGCGGCTTGGAGTGGCTTGA-ACAGCGGT--GACA 357 consensus_8956#1 GGTGGAAATGCCTTTTGGGCTTTGGCTCAGC----GATGGCTCGGCACGGTGGCCAGGCA 115 * * * * * **** * * ** ***** * ** * ** * ** consensus_8956#0 GTGGAGAAGACGGCCCGGCGGCGGCGGAAATCGGCATGGCAACGGTGACGATCACCATCC 417 consensus_8956#1 GCGCGAGGAATGGCCCGGCGGCGGCGGAAATCGACAGGGCGACGATGACGACCACTATCC 175 * * * ********************** ** *** *** ****** *** **** consensus_8956#0 GGTCTCCGGGCCGGGATCAAGGAATCGACGACCACGGTCGGCGGCCGGAGTTGAAGAAGA 477 consensus_8956#1 GGACTCCGGGCCGGGATCAAGGAATCGACGACCACGGCCAGCGGCCGGAGTTGAAGAAGA 235 ** ********************************** * ******************** consensus_8956#0 AGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTG 537 consensus_8956#1 AGGGCTCGATCTCCTCGATGGCGACGCCTCAGCTCGATTCCTTCGATGGGCTTGCTACTG 295 ************************************************************ consensus_8956#0 GCATCTTGGCAACTCTCGTGGCGCGACGGTTCGGCCTAAGATCCACCGGATTTGACGGGA 597 consensus_8956#1 GGATCTTGGCAATTCTCGTGGCGCGAAGCCTCGGCTTGAGATCCACCGGATT-GACGGGA 354 * ********** ************* * ***** * ************** ******* consensus_8956#0 ACAGCGGCGCGATCCACGGCGGCGCTCCGGGCTTGCTC-AGAACAGCGATGGCGAGGTCC 656 consensus_8956#1 ACGGCGACGCTATCCACGGCGGCGCTCCAGGCTTGCTCCAGAACAGCAATAGCAAGGTCC 414 ** *** *** ***************** ********* ******** ** ** ****** consensus_8956#0 GCGTTCCCGAATATCCACTGCATGAAATCGACTGAACTTAAGGGGGATGGAACTAGTACT 716 consensus_8956#1 GTGTTCCGGAACATCGACTGCATGAAATCGACTGAACTTAAGGGGAATGGAACCAGCACT 474 * ***** *** *** ***************************** ******* ** *** consensus_8956#0 GAGAGGAGACAAGGGAACGAACAAGATATCGAGACAACCGCGGCTCAAACGGCGATGGCG 776 consensus_8956#1 GAGAGGAGACAAGGGAACGAACAAGAGATCGAGACAACCGCGGCTCAATCGGCGATGGCG 534 ************************** ********************* *********** consensus_8956#0 ACGGTTGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC 836 consensus_8956#1 ACGGTCGTCATCCTTGCGGCCGGCGGCAAGAACTTGAGCGGCGGAGAGGCAGAGGCTCTC 594 ***** ****************************************************** consensus_8956#0 CCTCTCGAGCTGATCAGTTTTGGGAGTTTCTACTCCTTCAGTCCA 881 consensus_8956#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||