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Oryza sativa
cluster # 8966 cluster # 8966       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8966#0 length = 1384 sequences # 3  
consensus_8966#1 length = 822 sequences # 1  
consensus_8966#2 length = 527 sequences # 1  
consensus_8966#3 length = 425 sequences # 1  

consensusID : consensus_8966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1384
fasta sequence
                              [TTCATCGAACACCTTGTGTGCATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAGCTGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGTTTATTGCAGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCATATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTAACATATTTTGACTGAATTTGAACAAATTTTGACAAAATTTGCAAATATTTGACAAAAAGCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGCGCGAGAGGCGGAGATGGCAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAAAATGAGAACTGAAAATCTGCTTAGAGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTCTTGTGTTTTGCTGGTTAAGGACTGTATTTTAAAAGGTGCAGATTGTCTACCAAAATGGTCCTAATGTGTGTATCATAGAGGCCCAGCACAACACCTGGGGATACACAGAATAGCATGCCCCAATGCTTACTGCATGTCATCTGTATATCCTTATACTGCAACATGGCAGAAGGTTTTCACTACAAA]

[+] EMBL AK070444             [TTCATCGAACACCTTGTGTGCATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAGCTGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGTTTATTGCAGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCATATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGTCGCTTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGATGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTAACATATTTTGACTGAATTTGAACAAATTTTGACAAATTTTGCAAATATTTGACAAAAAGCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGCACGAGAGGCGGAGATGACAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGG  AAAAAAAATGAGAACTGAAAATCTGCTTAGGGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTCTTGTGTTTTGCTGGTTAAGGACTGTATTTTAAAAGGTGCAGATTGTCTACCAAAATGGTCCTAATGTGTGTATCATAGAGGCCCAGCACAACACCTGGGGATACACAGAATAGCATGCCCCAATGCTTACTGCATGTCATCTGTATATCCTTATACTGCAACATGGCAGAAGGTTTTCACTACAAA]
[-] EMBL CB658298             [                                                                                                                                                                                                                                                                                                                                                                                                                                              CAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTAACATATTTTGACTGAATTTGAACAAATTTTGACAAAATTTGCAAATATTTGACAAAAAGCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGCGCGAGAGGCGGAGATGGCAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAAAATGAGAACTGAAAATCTGCTTAGAGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTATGGTGTTTTGCTGGTTAAGGACTGTATTTTAAAA                                                                                                                                                        ]
[-] EMBL CB649007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTAACATATTTTGACTGAATTTGAACAAATTTTGACAAAATTTGCAAATATTTGACAAAAAGCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGCGCGAGAGGCGGAGATGGCAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAAAATGAGAACTGAAAATCTGCTTAGAGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGCCAGGGCGTTCTTGTGTTTTGCTGGTTAAcacata                                                                                                                                                                  ]


>consensus_8966#0 TTCATCGAACACCTTGTGTGCATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAG CTGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGT CGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGCTAGCCGCCCCTGTTTCGTCCGCA CTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGTTTATTGCAGGTACAAA GAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGA GAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAA CGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCATATCACTGGGTTATCT GAAACAGCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGAT TTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGG TGGTGTGGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATT CCAACCTGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTG CACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGA GACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTAACATATTTTGACTGAATTTG AACAAATTTTGACAAAATTTGCAAATATTTGACAAAAAGCCAAAAATTCGGGGAAGATTT GTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAG AACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGG CAACGCGCGAGAGGCGGAGATGGCAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAA CGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAG TCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAAAATGAGAACTG AAAATCTGCTTAGAGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTCTT GTGTTTTGCTGGTTAAGGACTGTATTTTAAAAGGTGCAGATTGTCTACCAAAATGGTCCT AATGTGTGTATCATAGAGGCCCAGCACAACACCTGGGGATACACAGAATAGCATGCCCCA ATGCTTACTGCATGTCATCTGTATATCCTTATACTGCAACATGGCAGAAGGTTTTCACTA CAAA



consensusID : consensus_8966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 822
fasta sequence
                              [TGTGCCTCCTTTATCATCACCGGTTGGAACCGAAGCCGGCGTAGCTGACCGCGGGAACCGTCGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGACCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTACGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGATTCCGAGGGAGTGGTTGAGTTGACTGCAGAACAGGGACATCAAATCTGTGAGCAAGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCGTATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTACATATTTTGACTGAATTTGAACAAATT]

[+] EMBL CB649006             [TGTGCCTCCTTTATCATCACCGGTTGGAACCGAAGCCGGCGTAGCTGACCGCGGGAACCGTCGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGACCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTACGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGATTCCGAGGGAGTGGTTGAGTTGACTGCAGAACAGGGACATCAAATCTGTGAGCAAGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCGTATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAATTATTTAAATTTTTACATATTTTGACTGAATTTGAACAAATT]


>consensus_8966#1 TGTGCCTCCTTTATCATCACCGGTTGGAACCGAAGCCGGCGTAGCTGACCGCGGGAACCG TCGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCG AACACCTGCAAGCGTCGCCGACCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTACGCG CCGCCGAACTTCGCCATCCCGCTGTCTCTCGATTCCGAGGGAGTGGTTGAGTTGACTGCA GAACAGGGACATCAAATCTGTGAGCAAGGTACAAAGAGGATGGTACTGTAAAACAAAATT CAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATT CACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAG ATGATGCTTACCAGCCCCGTATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCT CCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAATGTCGAGAGGAGGATTCTT GGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGTGGATCCTTTCCCCATCTGT CGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACCTGGTCGGGGATGGCGACGA CGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAGCAGGGTTTGCAAGTTCGGT TGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTTCGTGATTTTCGGACCGAAA TTATTTAAATTTTTACATATTTTGACTGAATTTGAACAAATT



consensusID : consensus_8966#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence
                              [AGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCATATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCATGCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGCACGAGAGGCGGAGATGACAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAATGAGAACTGAAAATCTGCTTAGGGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTCTTGTGTTTTGCTGGTTAAAAAAAAAAAAA]

[+] EMBL AU089820             [AGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCATATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCATGCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGCACGAGAGGCGGAGATGACAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAATGAGAACTGAAAATCTGCTTAGGGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTCTTGTGTTTTGCTGGTTAAAAAAAAAAAAA]


>consensus_8966#2 AGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCGTCGATGCCAAGATGATGCTTAC CAGCCCCATATCACTGGGTTATCTGAAACAGCAACAGGATAATCAACCTCCCATCACCAT GCCAAAAATTCGGGGAAGATTTGTGCTTGCCGGTGGGGGCCGAAAATTACCAAAATTTCA AACCATGTGCATGAGTTGGAAGAACAAGGAAGAGAGGTGGCTCCGCCGTGAGATCGAGCA ACGGAGGAGGCGGGGACGAAGGCAACGCACGAGAGGCGGAGATGACAGCGGTGGAAGGAA GGCGGGGGAGCAGAGGAGGAAACGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAA GGGCAACGATGGAACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAA TGGAAAAAAAATGAGAACTGAAAATCTGCTTAGGGGTTTCCTTGTGTAAGCAATGAATTG GAAAAGGACAGGGCGTTCTTGTGTTTTGCTGGTTAAAAAAAAAAAAA



consensusID : consensus_8966#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence
                              [ATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAGTGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGACAACGATGCCAGGTTCGTCGATGCCAAGATGTTGTTACCAGCCCATATCACTGGGNTATCTGAAACAGAACAGGTTAATCACCTTCCATAACATGCCAAAA]

[+] EMBL OSS16482A            [ATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAGTGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACCTGCAAGCGTCGCCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGACAACGATGCCAGGTTCGTCGATGCCAAGATGTTGTTACCAGCCCATATCACTGGGNTATCTGAAACAGAACAGGTTAATCACCTTCCATAACATGCCAAAA]


>consensus_8966#3 ATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAGTGACCGCGGGAACCGTGGCTC GGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGTCGGGAACCACGCATCGAACACC TGCAAGCGTCGCCGCTAGCCGCCCCTGTTTCGTCCGCACTGAGCTGCGCGCCGCCGAACT TCGCCATCCCGCTGTCTCTCGGTACAAAGAGGATGGTACTGTAAAACAAAATTCAGAGTT CAGAGCCAGCAGGAGTATCAACTTCAGAGAAAATAAAACATGAGAACAAAATTCACAATG CAGGAGAGTGAACCTTGGTGATGACAACGATGCCAGGTTCGTCGATGCCAAGATGTTGTT ACCAGCCCATATCACTGGGNTATCTGAAACAGAACAGGTTAATCACCTTCCATAACATGC CAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8966#1      ----------------TGTGCCTCCTTTATCATCACCGGTTGGAACCGAAGCCGGCGTAG 44
consensus_8966#3      ---------------------ATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAG 39
consensus_8966#0      TTCATCGAACACCTTGTGTGCATGCTTCATCATCACCGGTTGGAGCCGAAGCCGGCGTAG 60
consensus_8966#2      ----------------------AGAGTGAACCTTGGTGATGCACAACGATGCCAGGTTCG 38
                                                * * * *    * *      *** *** *  * *

consensus_8966#1      CTGACCGCGGGAACCGTCGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGT 104
consensus_8966#3      -TGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGT 98
consensus_8966#0      CTGACCGCGGGAACCGTGGCTCGGGCCGCCTCTACTTCCTCTGCTGCCTTGGATCAACGT 120
consensus_8966#2      TCGATGCCAAGA--TGATGCTTA--CCAGCCCCATATCACTGGGTTATCTGAAACAGCAA 94
                        **   *  **   *  ***    **  * * *  **    * *    ** * ** *  

consensus_8966#1      CGGGA--ACCACGCATCGAACACC-TGCAAGCGTCGCCGACCGCTAGCCGCCCCTGTTTC 161
consensus_8966#3      CGGGA--ACCACGCATCGAACACC-TGCAAGCGTCGCCG----CTAGCCGCCCCTGTTTC 151
consensus_8966#0      CGGGA--ACCACGCATCGAACACC-TGCAAGCGTCGCCG----CTAGCCGCCCCTGTTTC 173
consensus_8966#2      CAGGATAATCAACCTCCCATCACCATGCCAAAAATTCGG-------GGAAGATTTGTGCT 147
                      * ***  * **  *  * * **** *** *      * *       *       ***   

consensus_8966#1      GTCCGCACTGAGCTACGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGATTCCGAGGG 221
consensus_8966#3      GTCCGCACTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCG---------- 201
consensus_8966#0      GTCCGCACTGAGCTGCGCGCCGCCGAACTTCGCCATCCCGCTGTCTCTCGTTTATTGC-- 231
consensus_8966#2      TGCCGGTGGGGGCCGAAAATTACCAAAATT--TCAAACCA-TGTGCATGAGTTGGAAGAA 204
                        ***    * **         ** ** **   **  **  ***   *            

consensus_8966#1      AGTGGTTGAGTTGACTGCAGAACAGGGACATCAAATCTGTGAGCAAGGTACAAAGAGGAT 281
consensus_8966#3      -----------------------------------------------GTACAAAGAGGAT 214
consensus_8966#0      ---------------------------------------------AGGTACAAAGAGGAT 246
consensus_8966#2      CAAGGAAGAG-------------AGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGC 251
                                                                       **  **  *  

consensus_8966#1      GGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAAT 341
consensus_8966#3      GGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAAT 274
consensus_8966#0      GGTACTGTAAAACAAAATTCAGAGTTCAGAGCCAGCAGGAGTATCAACTTCAGAGAAAAT 306
consensus_8966#2      GGGGACG-AAGGCAACGCACGAGAGGCGGAGATGACAGCGGTGGAAG----GAAGGCGGG 306
                      **    * **  ***    *      * ***    ***  **   *       **     

consensus_8966#1      AAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGC 401
consensus_8966#3      AAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATG-ACAACGATGC 333
consensus_8966#0      AAAACATGAGAACAAAATTCACAATGCAGGAGAGTGAACCTTGGTGATGCACAACGATGC 366
consensus_8966#2      GGAGCAGAGGAGGAAA--CGGTGGCGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGC 364
                        * **   **  ***         *   *****    *   ****  *   *     **

consensus_8966#1      CAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCGTATCACTGGGTTATCTGAAACA 461
consensus_8966#3      CAGGTTCGTCGATGCCAAGATGTTG-TTACCAGCCC-ATATCACTGGGNTATCTGAAACA 391
consensus_8966#0      CAGGTTCGTCGATGCCAAGATGATGCTTACCAGCCCCATATCACTGGGTTATCTGAAACA 426
consensus_8966#2      AACGATGG--AACTTTGCAGTCGCACGAAGGAAGAATTGAACTTCGGCATGGATAAAATG 422
                       * * * *   *        *       *  *       * *   **  *   * ***  

consensus_8966#1      GCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAA 521
consensus_8966#3      G-AACAGGTTAATCA-CCTTCCATAAC-ATGCCAAAA----------------------- 425
consensus_8966#0      GCAACAGGATAATCAACCTCCCATCACCATGGTAAGTTGAAGAATTTTTGAGATTTAGAA 486
consensus_8966#2      GAAAAAAAATGAGAA-----CTGAAAATCTGCTTAGGGGTTTCCTTGTGTAAGCAATGAA 477
                      * ** *   * *  *     *    *   **   *                         

consensus_8966#1      TGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGT 581
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      TGTCGAGAGGAGGATTCTTGGGTGTGTTCGGCCGCCATGGCGAAGAGAGGCCGGTGGTGT 546
consensus_8966#2      TTGGAAAAGGACAGGGCGTTCTTGTGTTTTGCTGGTTAAAAAAAAAAAAA---------- 527
                                                                                  

consensus_8966#1      GGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACC 641
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      GGATCCTTTCCCCATCTGTCGCCTTGTCCATAGCCTCCTCCGTCTTCTCAGATTCCAACC 606
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      TGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAG 701
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      TGGTCGGGGATGGCGACGACGAAATGGACCCTCATCCGTTGTGCTGTTGTTGTGCACGAG 666
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      CAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTT 761
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      CAGGGTTTGCAAGTTCGGTTGCCATAGAAATTTCGGTGGTTGCCGAGAATTTGAGACTTT 726
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      CGTGATTTTCGGACCGAAATTATTTAAATTTTTA-CATATTTTGACTGAATTTGAACAAA 820
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      CGTGATTTTCGGACCGAAATTATTTAAATTTTTAACATATTTTGACTGAATTTGAACAAA 786
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      TT---------------------------------------------------------- 822
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      TTTTGACAAAATTTGCAAATATTTGACAAAAAGCCAAAAATTCGGGGAAGATTTGTGCTT 846
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      GCCGGTGGGGGCCGAAAATTACCAAAATTTCAAACCATGTGCATGAGTTGGAAGAACAAG 906
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      GAAGAGAGGTGGCTCCGCCGTGAGATCGAGCAACGGAGGAGGCGGGGACGAAGGCAACGC 966
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      GCGAGAGGCGGAGATGGCAGCGGTGGAAGGAAGGCGGGGGAGCAGAGGAGGAAACGGTGG 1026
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      CGAGAGAGAGGAGGCGGCGGTGGCGGGGAGAAGGGCAACGATGGAACTTTGCAGTCGCAC 1086
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      GAAGGAAGAATTGAACTTCGGCATGGATAAAATGGAAAAAAAAAATGAGAACTGAAAATC 1146
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      TGCTTAGAGGTTTCCTTGTGTAAGCAATGAATTGGAAAAGGACAGGGCGTTCTTGTGTTT 1206
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      TGCTGGTTAAGGACTGTATTTTAAAAGGTGCAGATTGTCTACCAAAATGGTCCTAATGTG 1266
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ------------------------------------------------------------
consensus_8966#3      ------------------------------------------------------------
consensus_8966#0      TGTATCATAGAGGCCCAGCACAACACCTGGGGATACACAGAATAGCATGCCCCAATGCTT 1326
consensus_8966#2      ------------------------------------------------------------
                                                                                  

consensus_8966#1      ----------------------------------------------------------
consensus_8966#3      ----------------------------------------------------------
consensus_8966#0      ACTGCATGTCATCTGTATATCCTTATACTGCAACATGGCAGAAGGTTTTCACTACAAA 1384
consensus_8966#2      ----------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)