cluster # 897

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Oryza sativa
cluster # 897 cluster # 897 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_897#0 length = 550 sequences # 1

consensus_897#1 length = 451 sequences # 1

consensusID : consensus_897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTGAACGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCGTGACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTAAAGAGCACAATAATATAAACATCTTTGTAGAGCCACGAGTTAGCAAGGAACTAGTGACTGAAGATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATTACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGCATCATTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGATCATTGGGATTCATGACCCCCTTCT]

[+] EMBL CF330661             [TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTGAACGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCGTGACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTAAAGAGCACAATAATATAAACATCTTTGTAGAGCCACGAGTTAGCAAGGAACTAGTGACTGAAGATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATTACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGCATCATTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGATCATTGGGATTCATGACCCCCTTCT]




>consensus_897#0
TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCAT
GACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAAT
AATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTGAA
CGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCGTG
ACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTAAA
GAGCACAATAATATAAACATCTTTGTAGAGCCACGAGTTAGCAAGGAACTAGTGACTGAA
GATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATTACAC
ACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGCATCA
TTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGATCATTGGGATTCATG
ACCCCCTTCT

consensusID : consensus_897#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCAACCGATGCACACCTCGTTGAGTTCTCGGAGGCTATGAGAGCTGTTGCGAAAACATTGCGACAAGTTACAGAAGGGAAAGCTGCTGCTCAAGCAGAGGCAGCTGAGTGGAAGCGCAAGTATGAATTAGAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAACCAAAGGCTGCAGTAACTGTGACAAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACATTGGAGACCACGTCGGTTGATCCAACAAGTTGCTGCGGAAATCATGAGATCTGTTCACGTCAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGC]

[+] EMBL CF322589             [ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCAACCGATGCACACCTCGTTGAGTTCTCGGAGGCTATGAGAGCTGTTGCGAAAACATTGCGACAAGTTACAGAAGGGAAAGCTGCTGCTCAAGCAGAGGCAGCTGAGTGGAAGCGCAAGTATGAATTAGAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAACCAAAGGCTGCAGTAACTGTGACAAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACATTGGAGACCACGTCGGTTGATCCAACAAGTTGCTGCGGAAATCATGAGATCTGTTCACGTCAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGC]




>consensus_897#1
ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCAACCGAT
GCACACCTCGTTGAGTTCTCGGAGGCTATGAGAGCTGTTGCGAAAACATTGCGACAAGTT
ACAGAAGGGAAAGCTGCTGCTCAAGCAGAGGCAGCTGAGTGGAAGCGCAAGTATGAATTA
GAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAACCAAAGGCTGCAGTAACTGTGAC
AAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACATTGGAGACCACGTCGGTTGATCCA
ACAAGTTGCTGCGGAAATCATGAGATCTGTTCACGTCAAATTCTCCAGGACGAATGCCCT
GGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCA
TGGGGATGCAATGGGGATAATAATGGTCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_897#0      TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCAT 60
consensus_897#1      ------------------------------------------------------------
                                                                                 

consensus_897#0      GACAAGATTGCTGCAAGAAAGGCACCATTTAAACTT--TCATGGGGATGCAATGGGGATA 118
consensus_897#1      ------ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCA 54
                           ** *   **   * **** * * *    **  **       * ****   *  *

consensus_897#0      ATAATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTG 178
consensus_897#1      AC------CGATGCACACCTCGTTGAGTTCTC--------GGAGGCTATGAGAGCTGTTG 100
                     *       *    **  * *  **  **   *         * ** *** * * * * **

consensus_897#0      AACGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCG 238
consensus_897#1      --CGAAAACATTGCGACAAGTTACAGAAG-GGAAAGCTGCTGCTCAAGCAGAGGCAGCTG 157
                       ** *   **    * *  ** *  *** ** ** *  ** * *** * *        *

consensus_897#0      TGACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTA 298
consensus_897#1      AGTGGAAGCGCAAGTATGAATTAGAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAA 217
                      *   ** *  ** *   * *  *   * **  **   **  * * *  **      * *

consensus_897#0      AAGAGCACAATAATATAAACATCTTTGTAGAGCCACG--AGTTAGCAAGGAACTAGTGAC 356
consensus_897#1      CCAAAGGCTGCAGTAACTGTGACAAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACAT 277
                        *   *   * **       *   * * **  *    **** ** **  *   *  * 

consensus_897#0      TGAAGATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATT 416
consensus_897#1      TGGAGACC---ACGTCGG-TTGATCCAA---CAAGTTGCTGCGGAAATCATGAGATCTGT 330
                     ** ***     ** **   ** ******      * *  **  **    ****   *  *

consensus_897#0      ACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGC 476
consensus_897#1      TCACGTCAAA-TTCTCCAGGACGAATGCCCTGGAACTAATAAAA-----TTTCGCATGAC 384
                      ***   **  **   *     * *   * ****  * **  **     **  *     *

consensus_897#0      ATCATTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGAT-CATTGGGAT 535
consensus_897#1      AAGATTGCTGCAAGAA--AGGCACC-----ATTTAAACTTTCATGGGGATGCAATGGGGA 437
                     *  **** *  *** *  **   **      ***    * **    **** ** ****  

consensus_897#0      TCATGACCCCCTTCT 550
consensus_897#1      TAATAATGGTCAGC- 451
                     * ** *    *  *