These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTGAACGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCGTGACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTAAAGAGCACAATAATATAAACATCTTTGTAGAGCCACGAGTTAGCAAGGAACTAGTGACTGAAGATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATTACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGCATCATTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGATCATTGGGATTCATGACCCCCTTCT] [+] EMBL CF330661 [TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTGAACGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCGTGACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTAAAGAGCACAATAATATAAACATCTTTGTAGAGCCACGAGTTAGCAAGGAACTAGTGACTGAAGATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATTACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGCATCATTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGATCATTGGGATTCATGACCCCCTTCT] consensusID : consensus_897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCAACCGATGCACACCTCGTTGAGTTCTCGGAGGCTATGAGAGCTGTTGCGAAAACATTGCGACAAGTTACAGAAGGGAAAGCTGCTGCTCAAGCAGAGGCAGCTGAGTGGAAGCGCAAGTATGAATTAGAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAACCAAAGGCTGCAGTAACTGTGACAAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACATTGGAGACCACGTCGGTTGATCCAACAAGTTGCTGCGGAAATCATGAGATCTGTTCACGTCAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGC] [+] EMBL CF322589 [ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCAACCGATGCACACCTCGTTGAGTTCTCGGAGGCTATGAGAGCTGTTGCGAAAACATTGCGACAAGTTACAGAAGGGAAAGCTGCTGCTCAAGCAGAGGCAGCTGAGTGGAAGCGCAAGTATGAATTAGAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAACCAAAGGCTGCAGTAACTGTGACAAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACATTGGAGACCACGTCGGTTGATCCAACAAGTTGCTGCGGAAATCATGAGATCTGTTCACGTCAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCATGACAAGATTGCTGCAAGAAAGGCACCATTTAAACTTTCATGGGGATGCAATGGGGATAATAATGGTCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_897#0 TGGACTGAAGGAGTAGAAATTCTCCAGGACGAATGCCCTGGAACTAATAAAATTTCGCAT 60 consensus_897#1 ------------------------------------------------------------ consensus_897#0 GACAAGATTGCTGCAAGAAAGGCACCATTTAAACTT--TCATGGGGATGCAATGGGGATA 118 consensus_897#1 ------ATGGAATCAGAGAGGGCAGCTTATGCGTTTCTTCCCCAAACTCCAATCAAGTCA 54 ** * ** * **** * * * ** ** * **** * * consensus_897#0 ATAATGGTCAGCACAAGCATGATTTTGTATCCTTCGAAAAAGGGGATATAACAACAGCTG 178 consensus_897#1 AC------CGATGCACACCTCGTTGAGTTCTC--------GGAGGCTATGAGAGCTGTTG 100 * * ** * * ** ** * * ** *** * * * * ** consensus_897#0 AACGCAGCAATAAGCAGATTTTGCTAAAGTGGGAATCCCCTCCACAAACTGTTCTTTTCG 238 consensus_897#1 --CGAAAACATTGCGACAAGTTACAGAAG-GGAAAGCTGCTGCTCAAGCAGAGGCAGCTG 157 ** * ** * * ** * *** ** ** * ** * *** * * * consensus_897#0 TGACTAAACCTAATTCCAACTCCGTGCACGCTCTCTGTGCTGAAATGGTTAGATGGCTTA 298 consensus_897#1 AGTGGAAGCGCAAGTATGAATTAGAAAAGGCAGTCAAGGCACACAGGCATAATACTGTAA 217 * ** * ** * * * * * ** ** ** * * * ** * * consensus_897#0 AAGAGCACAATAATATAAACATCTTTGTAGAGCCACG--AGTTAGCAAGGAACTAGTGAC 356 consensus_897#1 CCAAAGGCTGCAGTAACTGTGACAAGGAAAAGTTAGAGCAGTTGGCTAGTCAGCTGACAT 277 * * * ** * * * ** * **** ** ** * * * consensus_897#0 TGAAGATTCATACTTCAACTTTATCCAAACATGGGATAATGATGAGGAAATGAAGACATT 416 consensus_897#1 TGGAGACC---ACGTCGG-TTGATCCAA---CAAGTTGCTGCGGAAATCATGAGATCTGT 330 ** *** ** ** ** ****** * * ** ** **** * * consensus_897#0 ACACACGAAGGTTGATCTCATTGTAACTCTTGGAGGTGATGGAACAGTTTTATGGGCAGC 476 consensus_897#1 TCACGTCAAA-TTCTCCAGGACGAATGCCCTGGAACTAATAAAA-----TTTCGCATGAC 384 *** ** ** * * * * **** * ** ** ** * * consensus_897#0 ATCATTGTTCAAAGGACCAGTTCCCCCTGTGTTTGCGTTCTCTCTTGGAT-CATTGGGAT 535 consensus_897#1 AAGATTGCTGCAAGAA--AGGCACC-----ATTTAAACTTTCATGGGGATGCAATGGGGA 437 * **** * *** * ** ** *** * ** **** ** **** consensus_897#0 TCATGACCCCCTTCT 550 consensus_897#1 TAATAATGGTCAGC- 451 * ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||