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Oryza sativa
cluster # 8976 cluster # 8976       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8976#0 length = 946 sequences # 6  

consensusID : consensus_8976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 946
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGA-GAGAGATCAGGTGAA-ACAAAAACAAAAGCAGAGCACGGC-CGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCCGATCCGAAATGAACCATTAAACCAAGGTTTTTTTTAAGAATAACGGTTTAGTGGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACC-TGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCAGTGCACCCG-AACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCGTAGTATCCGGGGGATCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGCATGCACCTGATCCTGCCG-CCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGAAGGGGCATGCCGGCGGTGGACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCAGTGCTGTTGAGTTTCTACTCCTCAGTCCATG]

[-] EMBL CF335427             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGCCGGAGCTTCCATATATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGA GAGAGATCAGGTGAA ACAAAAACAAAAGCAGAGCACGGC CGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB965254             [                                                                                       TATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGA GAGAGATCAGGTGAA ACAAAAACAAAAGCAGAGCACGGC CGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCCTCCGATCCGAAATGAACCATTAAACCAAGGTTTTTTTTAAGAATAACGGTTTAGTGGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTTGCCTAACGTGGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTGGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCG AACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCAGGGGACCTGTGGTTCTCACGGTAGACAAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGGCACACCTGCATGCACCTGATCCTGCCGACAATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGAAGGGGCATG                                                                                                                                                                 ]
[+] EMBL CB967302             [                                                                                                     TTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGANGAGAGATCAGGTGAANAAAAAAACAAAAGCAGAGCACGGCGCGGTAAAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF336249             [                                                                                                                                                                                                                                                                                                                                                                          GCTTGTAGGCGATGAAGCTGATGAGCTGCACC TGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCAGTGCACCCG AACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCGTAGTATCCGGGGGATCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGCATGCACCTGATCCTGCCG CCATTGCTGACGTTGCCGAAGCCCGAGTTGGTGGAGCGGCGGCTGACGGGG AGCCCGGCGGTGGACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCA                               ]
[-] EMBL CF317596             [                                                                                                                                                                                                                                                                                                                                                                           CTTGTAGGCGATGAAGCTGATGAGCTGCACC TGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCAGTGCACCCGAAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCGTAGTATCCGGGGGATCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGCATGCACCTGATCCTGCCG CCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCG ACGGGCATGCCGGCGGTGGACTTGAGCCCCTGGAAGGGAGCGACGGTGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCAGTGCTGTTGAGTTTCTACTCCTCAGTCCATG]
[-] EMBL CF337682             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCTTGAGCACCTGGGTGGCGTCAGTGCACCCG AACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCGTAGTATCCGGGGGATCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGCATGCACCTGATCCTGCCG CCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCG ACGGGCATGCCGGCGGTGGACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAGCA                               ]


>consensus_8976#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTATATAGCCGGAGCTTTCATAGATTTCATTCAC ATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGA GAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAA CAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCCGATCCGAAATGAACCATTAA ACCAAGGTTTTTTTTAAGAATAACGGTTTAGTGGCCACCAGACTCCTCGCAGCCCGGGGG CTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACG GACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGC GTCAGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCGTAGTATCC GGGGGATCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCAC CCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGG CAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGCATGCACCT GATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGAAGGG GCATGCCGGCGGTGGACTTGAGCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCA TCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGA GTATGTCCAGTAGCAGTGCTGTTGAGTTTCTACTCCTCAGTCCATG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)