These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCCACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGGCCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAGGATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTGGGTGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT] [+] EMBL CB096380 [GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCCACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGGCCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAGGATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCTACCCCGATGCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTGGGTGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT] consensusID : consensus_8977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 646 fasta sequence [ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCCTACCCCGAATG-CCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACA--AAAAAAAAAAAAAAAAAACACTGTCATGCCGTTA-CGTAGC] [-] EMBL CF305525 [ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCCCTACCCCGAATG CCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCG A AAAAAAAAAAAAAAAAAACACTGTCGTGCCGTTA CGTAG ] [-] EMBL CF295334 [ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGGTATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGG CCTACCCCG ATGCCCTTTGTCCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTAAAAGGCCTCTGCTCTTAACAAAAAAATAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGAAAAACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTAATAAATTCGTCGACAATAAAAAAAAAAAAAAAAAACACTGTCATGCCGGTA C ] [-] EMBL CF300799 [ TCATCGGCTTCGACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGCATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGAC AAAAAAAAAAATAATAAACACTGTCATGCCGTTAGCGTAtc] [-] EMBL CF293450 [ GGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGAC AAAAAAAAAAAAAAAAACACTGTCATGCCGTTA GGTAGC] [-] EMBL CF302932 [ AGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGGAGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAATAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATATTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAAAAAAAAAAAACACTGTCATGCCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8977#0 GGACGAGACAAGGGGCAAGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCC 60 consensus_8977#1 ------------------------------------------------------------ consensus_8977#0 ACCAACTCGGGCTTCGGCAACGTCAGCAATGGCGGAAGGATCAAGTGCATGCAGGTGTGG 120 consensus_8977#1 ------------------------------------------------------------ consensus_8977#0 CCAATTGAGGGCATCAAGAAGTTCGAGACCCTATCGTACCTGCCACCACTCACCGTGGAG 180 consensus_8977#1 ------------------------------------------------------------ consensus_8977#0 GATCTTTTGAAGCAGATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGTCTCGAGTTC 240 consensus_8977#1 ---------------ATCGAGTACCTGCTTCGATCCAAGTGGGTGCCTTGCCTCGAGTTC 45 *********************************** ********* consensus_8977#0 AGCAAGGNTGGGTTCGTCTACCGTGAGAACCACAGGTCTCCCGGATACTACGATGGCAGG 300 consensus_8977#1 AGCAAGGTTGGATTCGTCTACCGTGAGAACCACAGGTCTCCCGGGTACTACGATGGCAGG 105 ******* *** ******************************** *************** consensus_8977#0 TATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAG 360 consensus_8977#1 TATTGGACCATGTGGAAGCTGCCCATGTTCGGCTGCACCGATGCCACCCAGGTGCTCAAG 165 ************************************************************ consensus_8977#0 GAGCTCGAGGAGGCCAAGAAGGCC-TACCCCGA-TGCCTTTGTCCGTATCATCGGCTTCG 418 consensus_8977#1 GAGCTCGAGGAGGCCAAGAAGGCCCTACCCCGAATGCCTTTGTCCGTATCATCGGCTTCG 225 ************************ ******** ************************** consensus_8977#0 ACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGG 478 consensus_8977#1 ACAACGTCAGGCAGGTGCAGTTGATTAGCTTCATCGCCTACAAGCCCCCAGGTTGCGAGG 285 ************************************************************ consensus_8977#0 AGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAA 538 consensus_8977#1 AGTCTGGTGGCAACTAAGCTAAGATCAAGCATCGCGCTGGTGGATTGCTGCCTATAATAA 345 ************************************************************ consensus_8977#0 TAGTATGCAGCTTTGNTTTGGGCTATATTGATGATATATCAATATATAATATGCTATATA 598 consensus_8977#1 TAGTATGCAGCTTTGTTTTGGGCTATGTTGATGATATATCAATATATAATATGCTATATA 405 *************** ********** ********************************* consensus_8977#0 TTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGT 658 consensus_8977#1 TTTTTATTTTACAGTTTGGTTATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGT 465 ************************************************************ consensus_8977#0 AATAATCTCTTCCCTCCCTCTCCGACCGGNTTTATTGTAAGAGTACTACAATTATCGGTG 718 consensus_8977#1 AATAATCTCTTCCCTCCCTCTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTG 525 ************************ **** *************************** ** consensus_8977#0 GGTGAGGATATGTGAAAACAAAGCTNCGGCTATATACACACAAGATATGTNTCTAGAGCA 778 consensus_8977#1 GGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCA 585 ************************* ************************ ********* consensus_8977#0 TATCTGATAAATTCGTCGACAATAAAAAAATGGGTGGNAT-------------------- 818 consensus_8977#1 TATCTGATAAATTCGTCGACAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTACGTAG 645 ********************** ******* * consensus_8977#0 - consensus_8977#1 C 646 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||