cluster # 8978

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Oryza sativa
cluster # 8978 cluster # 8978 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8978#0 length = 1081 sequences # 2

consensus_8978#1 length = 460 sequences # 2
consensus_8978#2 length = 247 sequences # 2

consensusID : consensus_8978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1081
fasta sequence

                              [TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCCTCTCCGGCCGGTTTAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAG-CTTAG-TTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACT-GCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTATGCCGAAGCCCGAGTGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTTGGAATGGAGCACGGGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGATACAACGGGAAGAGAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGCAAAGCCAAAGACAG]

[+] EMBL CB685465             [TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCCTCTCCGGCCGGTTTAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAG CTTAG TTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACT GCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACCTTGCTGAACTCGAGGCAAGGCAC                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL BM037966             [                                                                                                                                                                                                                                                                                                                                                           tttttttttTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGACTTAGATTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTCCAATACCTGCCATCGTAGTATCCGGGAGACCTGTGGTTCTCACGGTAGACGAACCCAACCTTGCTGAACTCGAGACAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAAAGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTATGCCGAAGCCCGAGTGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTTGGAATGGAGCACGGGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGATACAACGGGAAGAGAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGCAAAGCCAAAGACAG]




>consensus_8978#0
TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGAAGAGAT
TATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATA
AAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCAT
ACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCACCC
TCTCCGGCCGGTTTAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGA
GATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAA
ATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTG
CATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTGCCA
CCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTG
ACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTTCTTGGCCTCCTCG
AGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAGCTTCCACATGGTC
CAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTAGACGAATCCAACC
TTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGGTACTCGATCTGCTTCAAA
AGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAA
TGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTATGCCGAAGCCCGAG
TGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTTGGAATGGAGCACG
GGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGATACAACGGGAAGA
GAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGCAAAGCCAAAGACA
G

consensusID : consensus_8978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 460
fasta sequence

                              [TTTTTTTTTGGTCTCTCAAAAAGAAATACATTCGTTTACTAATTAACTTACACAAATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG]

[+] EMBL CF317390             [TTTTTTTTTGGTCTCTCAAAAAGAAATACATTCGTTTACTAATTAACTTACACAAATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAT ]
[+] EMBL CF301686             [                              ttttTTTACTAATTAACTTACACAAATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTAAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG]




>consensus_8978#1
TTTTTTTTTGGTCTCTCAAAAAGAAATACATTCGTTTACTAATTAACTTACACAAATAAT
TATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGCAAACA
AATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGACGAATT
TATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACAT
ATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGGAGGGAA
GAGATTATTACATATGTGTTAAGAGCAGAGGCCATTGAGATGGTACATAACCAAACTGTA
AAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGC
TGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG

consensusID : consensus_8978#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 247
fasta sequence

                              [ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAAAAAAAAA]

[+] EMBL AU162864             [ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAAAAAAAAA]
[+] EMBL AU197433             [ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNTCCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAAAAAAAAA]




>consensus_8978#2
ATGTACCATCTCAATGGCCTCTGCTCTTAACACATATGTAATAATCTCTTCCCTCCCTNT
CCGGCCGGTTTTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATATGTGAAAACAA
AGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAAATTCGTCGACA
ATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTTGTTTGCAAAAA
AAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8978#0      -TTTCCTTTGATAATTGTAGTACTCTTACAATAAAACCGGCCGGACAGGGAGGGA-AGAG 58
consensus_8978#1      TTTTTTTTTGGTCTCTCAAAAA-----GAAATACATTCGTTTACTAATTAACTTACACAA 55
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      ATTATTACAT-ATGTGTTAAGAGCAGAGGCCATTGAGATGG-TACATAACCAAAC--TGT 114
consensus_8978#1      ATAATTATGTCAGATCCTATATTCACAATACATTCGGTTAAACATAGAAACAAACATTGC 115
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      AAAATAAAAATATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAG 174
consensus_8978#1      AAACAAATACTTAAAAACAAACATAATTACGTGATACCATCCATTTTTTTTATTGTCGAC 175
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      CTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAGTTG 234
consensus_8978#1      GAATTTATCAGATATGCTCTAGATACATATCTTGTGTG-TATATAGCCGGAGCTTTGTTT 234
consensus_8978#2      --ATGTACCATCTCAATGGCCTCTGCTC--TTAACACA-TATGTAAT----AATCTCTTC 51
                           **  *                             *   *         *   ** 

consensus_8978#0      CCACCC-TCTCCGGCCGGTT-TAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGG 292
consensus_8978#1      TCACATATCCTCACCCAACGATAATTGTAGTACTCTTACAATAAAACCGGCCGGAGAGGG 294
consensus_8978#2      CCTCCC-TNTCCGGCCGGTT-TTATTGTAAGAGTACTACAATTATCGTTGGGTGAGGATA 109
                       * *   *   *  **     * ******  * *  ****** *     *   ***    

consensus_8978#0      AGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGC-CATTGAGATGGTACATAACCA 351
consensus_8978#1      AGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGC-CATTGAGATGGTACATAACCA 353
consensus_8978#2      TGTGAAAACAAAGCTCCGGCTATATACACACAAGATATGTATCTAGAGCATATCTGATAA 169
                       * *** * *    * *   * * *  * *  ***     **  ***   **  * *  *

consensus_8978#0      AACTGT--AAAATAAAAATA-TATAGCATATTATATATTGATATAT-CATCAACATAGCC 407
consensus_8978#1      AACTGT--AAAATAAAAATA-TATAGCATATTATATATTGATATAT-CATCAACATAGCC 409
consensus_8978#2      ATTCGTCGACAATAAAAAAAATGGATGGTATCACGTAATTATGTTTGTTTTTAAGTATTT 229
                      *   **  * ******** * *  *   *** *  ** * ** * *   *  *  **   

consensus_8978#0      CAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTT 467
consensus_8978#1      CAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATG--------- 460
consensus_8978#2      GTTTGCAAAAAAAAAAAA------------------------------------------ 247
                           ****     * *                                           

consensus_8978#0      AGCTTAGTTGCCACCAGACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAA 527
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      CTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGCATCGGGGTAGGCCTT 587
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      CTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCATCGGTGCAGCCGAACATGGGCAG 647
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      CTTCCACATGGTCCAATACCTGCCATCGTAGTACCCGGGAGACCTGTGGTTCTCACGGTA 707
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      GACGAATCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGATCGAAGCAGGTACTC 767
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      GATCTGCTTCAAAAGATCCTCCAGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTC 827
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      TTGATGCCCTCAATGTGGCACACCTGCATGCACTTGATCCTTCCGCCATNGCTGACGTAT 887
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      GCCGAAGCCCGAGTGGTGGAAGCGGAGGATGACGGGGANGCCGGGGAGGACTTGAGCCTT 947
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      GGAATGGAGCACGGGAGGGGGCGAAGAGGCAACAGGGGGGGGCAAACAAGTAGACGTAGA 1007
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      TACAACGGGAAGAGAAAAGCACGACNGGCGAAATCGGAACCGACGCCNCGGTTGCAACGC 1067
consensus_8978#1      ------------------------------------------------------------
consensus_8978#2      ------------------------------------------------------------
                                                                                  

consensus_8978#0      AAAGCCAAAGACAG 1081
consensus_8978#1      --------------
consensus_8978#2      --------------