These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2057 fasta sequence [AAATTCAATGAGAATTGAAGCCGAAGGGAGAAGTTCATTGACGGAATTGAAATGGTAACCGATCTTAAGGACGGGTAACCCGGCAGAGAGGGGACAAGGGCTGCCCGAAAGGAATNGGTTAAGATTTCCNGAGCNGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCTTCGGGAAGAGTTATCTTTTNTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACGGCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTATCAATCATCCTATAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAATCCGCAGGCAACGATGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTCCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCGATATTCCTGTTTGTCCTCCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCCAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCTATT-GTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAAT-TTCATGACAAT-ACTAGGAATAC-AAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCA--AAAAAAAAAAA] [+] EMBL AA753614 [AAATTCAATGAGAATTGAAGCCGAAGGGAGAAGTTCATTGACGGAATTGAAATGGTAACCGATCTTAAGGACGGGTAACCCGGCAGAGAGGGGACAAGGGCTGCCCGAAAGGAATNGGTTAAGATTTCCNGAGCNGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCTTCGGGAAGAGTTATCTTTTNTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGC ] [+] EMBL AK119652 [ GTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGGAAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGAGCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACGGCCCCCTCGGGGGCCTTCCCCGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTATCAATCATCCTATAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCGGAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTTGCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAATCCGCAGGCAACGATGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCAAAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAACTTTTCGTCCAGGAGCTCATCCTCCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAAATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTTGCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCTGCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTGCAGGTCACAGATTTAGCTAACCATCCACCCGATATTCCTGTTTGTCCTCCTATAGGTCAATCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCACAAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGCATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTTATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCCAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTTGATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCTATT GTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAAT TTCATGACAAT ACTAGGAATACAAAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGGTTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTC ] [+] EMBL BI801093 [ AGCATGCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCT CTGGACATGGTGATAGTTTTCGTACTCTTGATGA GCCAATATACCCCAGCTACATCAGGA CAGAAAAACTTTATTTCACAAGATGCTATT GTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAAT TTCATGACAAT ACTAGGAATAC AAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCA AAAAAAAA ] [+] EMBL BI802275 [ GCTATTGGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAATGTTCATGACAATGACTAGGAATAC AAATAAGCAACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTTGCTTCATGATAAAAAAAAA] [+] EMBL BI799132 [ TAGGAATAC AAATAAGC ACGAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGTTT ] consensusID : consensus_8979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [TAGGGAAATTCACACAGAATAAAGCAACGAAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACATAATAATAAGACCTCTGTTTGCTTCATGATAAAA] [+] EMBL BI801312 [TAGGGAAATTCACACAGAATAAAGCAACGAAACTGAAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGGTGTTGAAGCTTTATGATTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGCGGTAATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACATAATAATAAGACCTCTGTTTGCTTCATGATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8979#0 AAATTCAATGAGAATTGAAGCCGAAGGGAGAAGTTCATTGACGGAATTGAAATGGTAACC 60 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GATCTTAAGGACGGGTAACCCGGCAGAGAGGGGACAAGGGCTGCCCGAAAGGAATNGGTT 120 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AAGATTTCCNGAGCNGGACGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGG 180 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CGGGGGCTTCGGGAAGAGTTATCTTTTNTGCTTAACGGCCCGCCAACCCTGGAAACGGTT 240 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCG 300 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCAT 360 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAACAATGTAGGCAAGGGA 420 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCTCGGG 480 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GGTCCCGGCCCCGAACCCGTCGGCTGCCGGCGGACTGCTCGAGCTGCTCGCGCGGCGAGA 540 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GCGGGCCGCCGCGTGCCGGCCGGGGGACGGACCGGGAACGGCCCCCTCGGGGGCCTTCCC 600 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CGGGCGTCGAACAGCCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTA 660 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AAACAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTATCAATCATCCTA 720 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 TAGTTGCTCCCCTATTTCAGCATCTCAATTTAAGAAAGGTGTGAAGGCATGCCGATCCCG 780 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GAAAAGGACGGGGTGGAGGACAATCAAGAGGATGATACATTTTCAAGGTTGCAATTGCTT 840 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GCACAACAACGACATGCCATGGAGAAGTTCTGGAGGATGAGCCAGGAACAGATCGAAGAA 900 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 TCCGCAGGCAACGATGAGCTTATACTGCCGATTTCCCGTGTCAAGAATATCATCCATGCA 960 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AAGGAGGGTGGTATGATGTTATCTGCTGATACCCCAGCTTTTGTAACAAAACTTTGTGAA 1020 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CTTTTCGTCCAGGAGCTCATCCTCCGTGCTTGGGTGTGCGCCAACTCACACAATCGTGAA 1080 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 ATCATACTTGGCACAGATATTGCTGAGGCAATCACCACCACAGAATCCTATCACTTTCTT 1140 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GCTAATGTAGTCCATGGCCACCAGGCGCTAGGAAGCAACATACCAGAGATAGGGGTTTCT 1200 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GCTTGGAAGCGCCATAAGCTAGATGAAATGACCTCACTCTGCCATCCTCCCCAAGCAGTG 1260 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CAGGTCACAGATTTAGCTAACCATCCACCCGATATTCCTGTTTGTCCTCCTATAGGTCAA 1320 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 TCGGGTACTCAGCACACAACATCTACACATGTTTTGATGATGCAAGGAGAATCTATTCAC 1380 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 AAGGCAAGTAAAGAAAAATCCCCACTGAAGGAAGTGATGGTGCCGACCAACAAGGTGGGC 1440 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 ATGACCAACAGCTCTTATGGAGTTCCTAATGGTGGTGGTGCTACTAGTAGTAAAGTTGTT 1500 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 ATTGATAGCCCGAAAGGCGAAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCC 1560 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 CCAGAAGATAACTATGTTATTCCCATTCCTGCTGGACATGGTGATAGTTTTCGTACTCTT 1620 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GATGAGGCCAATATACCCCAGCTACATCAGGAGCAGAAAAACTTTATTTCACAAGATGCT 1680 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 ATTGTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAG 1740 consensus_8979#1 ------------------------------------------------------------ consensus_8979#0 GACTTACTTTTTCCTGACAAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAATTTC 1800 consensus_8979#1 -----------------------------------------------------------T 1 consensus_8979#0 ATGACAATACTAGGAATACAAATAAGCAACGAA-CTGAAGAAGGATGCATCCTGGTTAAT 1859 consensus_8979#1 AGGGAAATTC---ACACAGAATAAAGCAACGAAACTGAAGAAGGATGCATCCTGGTTAAT 58 * * *** * * * ** ********** ************************** consensus_8979#0 CCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTG-TGTTGAAGCTTTATGATT 1918 consensus_8979#1 CCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGGTGTTGAAGCTTTATGATT 118 ***************************************** ****************** consensus_8979#0 TACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTA 1978 consensus_8979#1 TACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAG-CGGTA 177 ****************************************************** ***** consensus_8979#0 ATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACAATAATAATAAGACCTCTGT 2038 consensus_8979#1 ATATGTAGTACCTTGTATTTCCATCCATCTTCGTATGGACA-TAATAATAAGACCTCTGT 236 ***************************************** ****************** consensus_8979#0 TTGCTTCAAAAAAAAAAAA 2057 consensus_8979#1 TTGCTTCATGATAAAA--- 252 ******** * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||