These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1420 fasta sequence [GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAACATTCAGATCAAAGCATGTGGACGATGCATCACATTGTCTGGGATATAACATACAAAATGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTGAGCACAAGACTGTTGGTGGGCTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACA-TTGGCCTAAACA-CTCTGCGTACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCA-CTCTTGGGGCTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT-CTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG-TTGTCATCTATCACTATTGAGTTATGTGAAAAA] [+] EMBL AK107288 [GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAACATTCAGATCAAAGCATGTGGACGATGCATCACATTGTCTGGGATATAACATACAAAATGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTGAGCACAAGACTGTTGGTGGGCTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACA TTGGCCTAAACA CTCTGCGTAATGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCA CTCTTGGGGCTTGTTCCA TTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT CTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG TT ] [+] EMBL BI803301 [ GCATAGGTAC ATGCAAGCTAAAGG AAC CTGCATATGGCATTAACATGGAGTCACGCCTGAAAATCCAATATTATCCCATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCCATTGCTTTGGGCATTAACTTGCAGTCACCATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACACTTGGCCTAAACA CTCTGCGTACTGGACAAATC ATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCA CTCTTGGGGCTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT CTGCAGTTTATATTGTGCTGCC ATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG TTGTCATCTATCACTATTGAGTTATGTGAAAAA] [+] EMBL BI803964 [ GTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACA TTGGCCTAAACACCTCTGCGTACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACCTCTTGGGGCTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT CTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAGCTTGTCATCTATCACTATTGAGTTATGTGAAAAA] [+] EMBL BI800682 [ cCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTAC TTTATTTATTTTCTTCGGAGGATGTGTGGAGTTCCTCCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG TTGTCcaaaa ] consensusID : consensus_8980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence [GAGTACAATTTTGATGGTGCTAGTCTTGAAAAAACTCTTGTGCTTCATAAGCCTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAAGGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGATGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACCTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGCATACTGGAC-AAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGGGGGCTTGTTCCATTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAAGGTGGTCATGAGGGAAAACTATTTTCTTTTCTTTGGTATTACTTCNTTTCATCTTANCATATTTTNCTATTTACTCAACCCTACTTTTATTTAATTTTCTTCGGAGGATGGGGNGGAGTTCT] [+] EMBL CB096824 [GAGTACAATTTTGATGGTGCTAGTCTTGAAAAAACTCTTGTGCTTCATAAGCCTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAAGGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGATGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACCTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGCATACTGGAC AAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGGGGGCTTGTTCCATTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAAGGTGGTCATGAGGGAAAACTATTTTCTTTTCTTTGGTATTACTTCNTTTCATCTTANCATATTTTNCTATTTACTCAACCCTACTTTTATTTA ] [+] EMBL CB096670 [ TCTTGAAAAAACTCTTGTGCTTCATAAGCCTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAAGGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGATGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAA CTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGCATACTGGACAAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGGGGGCTTGNTCCATTGGCAACCTCCGTGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAAGGNGGTCATGAGGGAAAACTATTTTC TTTCTTTGGTATTACTTCNTTTCATCTTANCATATTTTCCTATTTACTCAACCCTACTTTTATTTAATTTTCTTCGGAGGATGGGGNGGAGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8980#0 GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCG 60 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 TTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCT 120 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 CCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGA 180 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 TTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACG 240 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 GCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGG 300 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 TAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGC 360 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 TAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAG 420 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 TCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATG 480 consensus_8980#1 ------------------------------------------------------------ consensus_8980#0 GATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGA 540 consensus_8980#1 ---------------------------GAGTACAATTTTGATGGTGCTAGTCTTGAAAAA 33 ** ** * * * ** * * * * consensus_8980#0 GTAGGAGGGCGCGGCGGCCGCCGCAAAAC-CCGGGGCGCGAGCCCGGGCGGAGCGGCCGT 599 consensus_8980#1 ACTCTTGTGCTTCATAAGC-CTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAA 92 * ** * * ***** * * ** * * * * * consensus_8980#0 CGGTGC----AGATCTTGGTGGTAGT---AGCAAACATTCAGATCAAAGCATGTGGACGA 652 consensus_8980#1 GGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGA 152 * * **** * * * * ************************* consensus_8980#0 TGCATCACATTGTCTGGGATATAACATACAAAATGCTTGGAAGAAACTTGCATATTGTAT 712 consensus_8980#1 TGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTAT 212 ********** ********************** ************************** consensus_8980#0 TTGGGGTGAGACTACAACCAAGGATACTGAGCACAAGACTGTTGGTGGGCTTTCAGTAAT 772 consensus_8980#1 TTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAAT 272 **************************** **** ************** *********** consensus_8980#0 GTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGA 832 consensus_8980#1 GTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGA 332 ************************************************************ consensus_8980#0 AAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGG 892 consensus_8980#1 AAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGG 392 ***** ********* ******************************************** consensus_8980#0 CGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTT 952 consensus_8980#1 CGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTT 452 *************************** ******************************** consensus_8980#0 CTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAAC-TTGCAGT 1011 consensus_8980#1 CTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACCTTGCAGT 512 **************************************************** ******* consensus_8980#0 CACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGC 1071 consensus_8980#1 CACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGC 572 ************************************************************ consensus_8980#0 GTACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGG 1131 consensus_8980#1 ATACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGG 632 *********************************************************** consensus_8980#0 GG-CTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAA 1190 consensus_8980#1 GGGCTTGTTCCA-TTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAA 691 ** ********* *********************************************** consensus_8980#0 TTAGCTTATTA-GGTGGTCATGAGGGAAAACTATTTTCTTT-CTTTGTTATTACTTCTTT 1248 consensus_8980#1 TTAGCTTATTAAGGTGGTCATGAGGGAAAACTATTTTCTTTTCTTTGGTATTACTTCNTT 751 *********** ***************************** ***** ********* ** consensus_8980#0 CCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTA-TTTTCTTCGGAGGA 1307 consensus_8980#1 TCATCTTANCATATTTTNCTATTTACTCAACCCTACTTTTATTTAATTTTCTTCGGAGGA 811 ******* ******** *************************** ************** consensus_8980#0 TGTG-TGGAGTTCTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTG 1366 consensus_8980#1 TGGGGNGGAGTTCT---------------------------------------------- 825 ** * ******** consensus_8980#0 TAATATAAGCTTTTCTTAAAGTTGTCATCTATCACTATTGAGTTATGTGAAAAA 1420 consensus_8980#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||