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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1420 fasta sequence
[GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAACATTCAGATCAAAGCATGTGGACGATGCATCACATTGTCTGGGATATAACATACAAAATGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTGAGCACAAGACTGTTGGTGGGCTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACA-TTGGCCTAAACA-CTCTGCGTACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCA-CTCTTGGGGCTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT-CTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG-TTGTCATCTATCACTATTGAGTTATGTGAAAAA]
[+] EMBL AK107288 [GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCCGCAAAACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAACATTCAGATCAAAGCATGTGGACGATGCATCACATTGTCTGGGATATAACATACAAAATGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTGAGCACAAGACTGTTGGTGGGCTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACA TTGGCCTAAACA CTCTGCGTAATGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCA CTCTTGGGGCTTGTTCCA TTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT CTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG TT ]
[+] EMBL BI803301 [ GCATAGGTAC ATGCAAGCTAAAGG AAC CTGCATATGGCATTAACATGGAGTCACGCCTGAAAATCCAATATTATCCCATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCCATTGCTTTGGGCATTAACTTGCAGTCACCATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACACTTGGCCTAAACA CTCTGCGTACTGGACAAATC ATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCA CTCTTGGGGCTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT CTGCAGTTTATATTGTGCTGCC ATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG TTGTCATCTATCACTATTGAGTTATGTGAAAAA]
[+] EMBL BI803964 [ GTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACA TTGGCCTAAACACCTCTGCGTACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACCTCTTGGGGCTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAGGTGGTCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTATTTTCTTCGGAGGATGTGTGGAGTT CTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAGCTTGTCATCTATCACTATTGAGTTATGTGAAAAA]
[+] EMBL BI800682 [ cCATGAGGGAAAACTATTTTCTTTCTTTGTTATTACTTCTTTCCATCTTAGCATATTTTCCTATTTACTCAACCCTAC TTTATTTATTTTCTTCGGAGGATGTGTGGAGTTCCTCCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTGTAATATAAGCTTTTCTTAAAG TTGTCcaaaa ]
consensusID : consensus_8980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence
[GAGTACAATTTTGATGGTGCTAGTCTTGAAAAAACTCTTGTGCTTCATAAGCCTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAAGGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGATGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACCTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGCATACTGGAC-AAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGGGGGCTTGTTCCATTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAAGGTGGTCATGAGGGAAAACTATTTTCTTTTCTTTGGTATTACTTCNTTTCATCTTANCATATTTTNCTATTTACTCAACCCTACTTTTATTTAATTTTCTTCGGAGGATGGGGNGGAGTTCT]
[+] EMBL CB096824 [GAGTACAATTTTGATGGTGCTAGTCTTGAAAAAACTCTTGTGCTTCATAAGCCTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAAGGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGATGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACCTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGCATACTGGAC AAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGGGGGCTTGTTCCATTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAAGGTGGTCATGAGGGAAAACTATTTTCTTTTCTTTGGTATTACTTCNTTTCATCTTANCATATTTTNCTATTTACTCAACCCTACTTTTATTTA ]
[+] EMBL CB096670 [ TCTTGAAAAAACTCTTGTGCTTCATAAGCCTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAAGGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGATGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTATTTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAATGTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGAAAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGGCGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTTCTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAA CTTGCAGTCACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGCATACTGGACAAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGGGGGCTTGNTCCATTGGCAACCTCCGTGTATAAGAGCTTTGTCCATTCCGCGGAGCATAATTAGCTTATTAAGGNGGTCATGAGGGAAAACTATTTTC TTTCTTTGGTATTACTTCNTTTCATCTTANCATATTTTCCTATTTACTCAACCCTACTTTTATTTAATTTTCTTCGGAGGATGGGGNGGAGTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8980#0 GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCG 60
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 TTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCT 120
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 CCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGA 180
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 TTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACG 240
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 GCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGG 300
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 TAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCTGGTTACGGTGCCGAACTGCGCGC 360
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 TAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAG 420
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 TCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATG 480
consensus_8980#1 ------------------------------------------------------------
consensus_8980#0 GATGGCGCTGAAGCGCGCGACCCACACCAGGCCATCTGGGCGAGCGCCATGCCCCGATGA 540
consensus_8980#1 ---------------------------GAGTACAATTTTGATGGTGCTAGTCTTGAAAAA 33
** ** * * * ** * * * *
consensus_8980#0 GTAGGAGGGCGCGGCGGCCGCCGCAAAAC-CCGGGGCGCGAGCCCGGGCGGAGCGGCCGT 599
consensus_8980#1 ACTCTTGTGCTTCATAAGC-CTACAAAATGCTTTGAAGCTACTTTAGTTGAATTCTCTAA 92
* ** * * ***** * * ** * * * * *
consensus_8980#0 CGGTGC----AGATCTTGGTGGTAGT---AGCAAACATTCAGATCAAAGCATGTGGACGA 652
consensus_8980#1 GGACATGAAGAAATCTAGAATCCATTTTAACTCTTCATTCAGATCAAAGCATGTGGACGA 152
* * **** * * * * *************************
consensus_8980#0 TGCATCACATTGTCTGGGATATAACATACAAAATGCTTGGAAGAAACTTGCATATTGTAT 712
consensus_8980#1 TGCATCACATAGTCTGGGATATAACATACAAAAGGCTTGGAAGAAACTTGCATATTGTAT 212
********** ********************** **************************
consensus_8980#0 TTGGGGTGAGACTACAACCAAGGATACTGAGCACAAGACTGTTGGTGGGCTTTCAGTAAT 772
consensus_8980#1 TTGGGGTGAGACTACAACCAAGGATACTAAGCATAAGACTGTTGGTGGACTTTCAGTAAT 272
**************************** **** ************** ***********
consensus_8980#0 GTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGA 832
consensus_8980#1 GTTCTTGGGTGACACTATGCTTACTGGTGTGAAGATTGAGGACTACATTTCTGTTGGAGA 332
************************************************************
consensus_8980#0 AAGTCTAGCACTACTGGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGG 892
consensus_8980#1 AAGTCAAGCACTACTAGTAAGCATAGGTACAATGCAAGCTAAAGGAAACACTGCATATGG 392
***** ********* ********************************************
consensus_8980#0 CGTTAACATGGAGTCACGCCTGAAAATAAAATATTATCCAATTAATCGGTTAATGTTGTT 952
consensus_8980#1 CGTTAACATGGAGTCACGCCTGAAAATCAAATATTATCCAATTAATCGGTTAATGTTGTT 452
*************************** ********************************
consensus_8980#0 CTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAAC-TTGCAGT 1011
consensus_8980#1 CTTCGGTTTATCTCTGATTAAATTGCATAGTGCAATTGCTTTGGGCATTAACCTTGCAGT 512
**************************************************** *******
consensus_8980#0 CACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGC 1071
consensus_8980#1 CACAATACTTACTCAGAAGGCATTCTAAGATGGCACTTCACATTGGCCTAAACACTCTGC 572
************************************************************
consensus_8980#0 GTACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGG 1131
consensus_8980#1 ATACTGGACAAATCAATCTAAAGATGAGCACCTCAAAGATGGTTCAGATAGCACTCTTGG 632
***********************************************************
consensus_8980#0 GG-CTTGTTCCACTTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAA 1190
consensus_8980#1 GGGCTTGTTCCA-TTGGCAACCTCCATGTATAAGAGCTTTGTCCATTCCGCGGAGCATAA 691
** ********* ***********************************************
consensus_8980#0 TTAGCTTATTA-GGTGGTCATGAGGGAAAACTATTTTCTTT-CTTTGTTATTACTTCTTT 1248
consensus_8980#1 TTAGCTTATTAAGGTGGTCATGAGGGAAAACTATTTTCTTTTCTTTGGTATTACTTCNTT 751
*********** ***************************** ***** ********* **
consensus_8980#0 CCATCTTAGCATATTTTCCTATTTACTCAACCCTACTTTTATTTA-TTTTCTTCGGAGGA 1307
consensus_8980#1 TCATCTTANCATATTTTNCTATTTACTCAACCCTACTTTTATTTAATTTTCTTCGGAGGA 811
******* ******** *************************** **************
consensus_8980#0 TGTG-TGGAGTTCTGCAGTTTATATTGTGCTGCCAATGTAAAATTGTAGTGCTTTTGTTG 1366
consensus_8980#1 TGGGGNGGAGTTCT---------------------------------------------- 825
** * ********
consensus_8980#0 TAATATAAGCTTTTCTTAAAGTTGTCATCTATCACTATTGAGTTATGTGAAAAA 1420
consensus_8980#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||