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Oryza sativa
cluster # 8993 cluster # 8993       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8993#0 length = 1171 sequences # 5  
consensus_8993#1 length = 279 sequences # 1  

consensusID : consensus_8993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1171
fasta sequence
                              [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTGGTGTTTACAGAAAAAAAAAAAAAGA]

[+] EMBL AK111981             [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTG                         ]
[+] EMBL AK111906             [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCGGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACAT                           ]
[+] EMBL CB658030             [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB658031             [                                                                                                                                                                                                                                                                                                                                                      GTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTGGTGTTTACAGAAAAAAAAAAAAAGA]
[+] EMBL OS1166A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aaGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAAT                                                                                                                    ]


>consensus_8993#0 GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCC ACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCT TCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGC GGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGA TTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGC GGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTT AGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAG ATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAA ATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAAT GCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCC TCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAAC CATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAG GCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATG GACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA CGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTT AAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATA ACATTGGTGTTTACAGAAAAAAAAAAAAAGA



consensusID : consensus_8993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence
                              [CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA]

[+] EMBL C98215               [CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA]


>consensus_8993#1 CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTA AAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACC GAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTA ACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGA GTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8993#0      GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCC 60
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      ACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCT 120
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      TCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGC 180
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      GGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGA 240
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      TTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGC 300
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      GGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTT 360
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      AGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAG 420
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      ATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAA 480
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      ATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAAT 540
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      GCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCC 600
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      TCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAAC 660
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      CATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAG 720
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      GCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATG 780
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      GACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA 840
consensus_8993#1      --------------------CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA 40
                                            **************************************

consensus_8993#0      CGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG 900
consensus_8993#1      CGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG 100
                      ********** *************************************************

consensus_8993#0      CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA 960
consensus_8993#1      CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA 160
                      ************************************************************

consensus_8993#0      AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG 1020
consensus_8993#1      AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG 220
                      ************************************************************

consensus_8993#0      GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTT 1080
consensus_8993#1      GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA- 279
                      **********************************************  *     *     

consensus_8993#0      AAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATA 1140
consensus_8993#1      ------------------------------------------------------------
                                                                                  

consensus_8993#0      ACATTGGTGTTTACAGAAAAAAAAAAAAAGA 1171
consensus_8993#1      -------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)