These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1171 fasta sequence [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTGGTGTTTACAGAAAAAAAAAAAAAGA] [+] EMBL AK111981 [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTG ] [+] EMBL AK111906 [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCGGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACAT ] [+] EMBL CB658030 [GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCCACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCTTCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGCGGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGATTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGCGGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCC ] [-] EMBL CB658031 [ GTTATCTCAGGAGCTGTTAGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAGATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAAATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAATGCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTTAAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATAACATTGGTGTTTACAGAAAAAAAAAAAAAGA] [+] EMBL OS1166A [ aaGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAAT ] consensusID : consensus_8993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA] [+] EMBL C98215 [CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGGCATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGAAGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTGGTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8993#0 GCGGCGGCGCCGCCGATCCGCGTGGCGCTGACGGAGTCCTCCGGCCGAGGGGTCTTCGCC 60 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 ACCCGCCCCATCTCCGCCGGCGAGGTCCTCCACTCCGCGCAGCCCCTCGTCTCCCACCCT 120 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 TCCCCTCCCCTCATCCACGAGGTGTGCTACAGCTGCCTCAGGAGGAAGTCCGGGAGCGGC 180 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 GGCGGCTCGAGCGGGAGCTGCTACTTCTGCAGCGACGCGTGCAGGGAGCACGCCAAGGGA 240 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 TTCCATGGCGTTGAAAAGAAAGCGGATTGGTCTTTGTTTGATGACCACTGCAGTTCACGC 300 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 GGTCTAAAGTACCCGTACATGGCAAAGCGACTAGCTTGCATGGTTATCTCAGGAGCTGTT 360 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 AGTGCAGACTGTCTTGACATACTCCAGCCAGCCCGTTTGCACCAGGGGACACTTACAGAG 420 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 ATGGAGGAAGAGTTTGCGTTGTTGGATTCCACTTTTAGGAAGGCAGGGTTTCAGGAAGAA 480 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 ATCACAACTTTTTTGACCAAAGAGTGGTACATCAATGTGCTGGCAAGGATACGCATAAAT 540 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 GCATTCCGCATTGAACTGGTTGCAAGTTCATATGAGAACCTTCTATCCTCAGCAGTAGCC 600 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 TCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTTCTATAAC 660 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 CATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAG 720 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 GCCCTCCGCAACATCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATG 780 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 GACGTCGATGCCCGTCAGAGGATTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA 840 consensus_8993#1 --------------------CGTTCTCGCCGAAGGATTTGGCTTCGAATGCCGCTGCCAA 40 ************************************** consensus_8993#0 CGGTGCTTGTCTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG 900 consensus_8993#1 CGGTGCTTGTNTGGAGATTAAAACACCATCCCTTTTTCGTTGTATTTTCCATCCTTTTGG 100 ********** ************************************************* consensus_8993#0 CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA 960 consensus_8993#1 CATGCACATTGAAGCCAACCGAGGTTAATTACCATTGTAAACTTTTCAAAGATCAGTTGA 160 ************************************************************ consensus_8993#0 AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG 1020 consensus_8993#1 AGCCAGGAGTCACCAATGTAACTGCCAGGTGCTCCTGTTTGGAAGATTTGTAACGTGTTG 220 ************************************************************ consensus_8993#0 GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTATTACCCCGATGTTT 1080 consensus_8993#1 GTGTGTGTGTGTCGACAAGAGTACGAATACTGAATGTTGTTGATTAAAAAAAAAAAAAA- 279 ********************************************** * * consensus_8993#0 AAGCATTAGACTTTTGGACATTATTAGACATTTGTTTGACATGTTACTGCCATGCCAATA 1140 consensus_8993#1 ------------------------------------------------------------ consensus_8993#0 ACATTGGTGTTTACAGAAAAAAAAAAAAAGA 1171 consensus_8993#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||