These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1891 fasta sequence [CCTCCTCCTCGTCACCTCACCTGCACCTGCACCAACGCGAGAGATCATGGCGAAGAGATCGTCTCCTGATCCCGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTCCTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCCGAGGACGGACAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGTTGATCCTTCTTCCAATGGCGGTGGCGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAGGGGAGTCACCAGGTATGCGTCTCTGCATGGCATCGGTGGACTGGCAGATTTGAGGCCCATCTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTATTTGGGGGCTTATGATAGTGAAGAGGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAGTACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCGGAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGTTTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGGGAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACTCAAGAGGAGGCAGCCAAGGCC-TATGATCTTGCT-GCAATTGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTACTGGCACAACTGCAACAAGAGCTACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCTGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCTTTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTGTGACAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTAGATAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA-GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGGCACTGCCACA-AAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGA-TTCATA-TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA-CCC-AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC-ATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAAAAAATTGAATGCTTGAGTAGTACTATAGGTATTCCCACAAGAAAACTCTGGGTAGTTCACAGTTTTATAAGGTAATGGAGCATATGTTATACAGAAATCACAATATGTAAATCTATCTAACTTTCAGAATAAACTATACTATACATCTTGGTTGAGGC] [+] EMBL AK112088 [CCTCCTCCTCGTCACCTCACCTGCACCTGCACCAACGCGAGAGATCATGGCGAAGAGATCGTCTCCTGATCCCGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTCCTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCCGAGGACGGACAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGTTGATCCTTCTTCCAATGGCGGTGGCGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAGGGGAGTCACCAGGTATGCGTCTCTGCATGGCATCGGTGGACTGGCAGATTTGAGGCCCATCTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTATTTGGGGGCTTATGATAGTGAAGAGGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAGTACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCGGAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGTTTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGGGAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACTCAAGAGGAGGCAGCCAAGGCC TATGATCTTGCT GCAATTGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTACTGGCACAACTGCAACAAGAGCTACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCTGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCTTTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTGTGACAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTAGATAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTC TGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGGCACTGCCACA AAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGA TTCATA TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA CCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCCCAAGGCTGATTGATTAACTAGGGAGACAATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAGAATCTTGAATGCTTGAGTAGTACTATAGGTATTCCCACAAGAAAACTCTGGGTAGTTCACAGTTTTATAAGGTAATGGAGCATATGTTATACAGAAATCACAATATGTAAATCTATCTAACTTTCAGAATAAACTATACTATACATCTTGGTTGAGGC] [-] EMBL CA756117 [ aGATACTCAAGAGGAGGCAGCCAAGGCCTTATGATC TGCTGGCAATCGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGGTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTATTGGCACAACTGCAACAAGAGCCACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCCGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCATTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGA ] [+] EMBL BI804619 [ CAACAGCATGGATAACTCAGGTGTGACAGAATAC ATTTGTTTGAGGAATGC ATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTAGATAAGGACATTTCAATTTCAGATGGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCCAATGGCACTGCCACACAAGAAGC AAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGA TTCATA TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA CCC AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC ATTTTCTCCCTTACCCTAaaaaa ] [+] EMBL BI804289 [ ATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACACGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCC ATGGCACTGCCACA AAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGACTTCATA TGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCC AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC ATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAAAAAA ] [+] EMBL BI803906 [ ATATCTCCTCAAGC AACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTGTTGAAAATCTTGAGATATACA GGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCTGTCC ATGGCACTGCCACA AAGAAGC AAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGAAGACTTCATACTGCTTCTCCCTATGGTCCTAGTCTCCTAGAAA CCC AAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACTAGGGAGAC ATTTTCTCCCTTACCCTAGCTTGAGCTAGTTAATTCTGATTACTCAAAAAA ] consensusID : consensus_8997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [AGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATTTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTAGACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGCGTGTTTCTGGGTGTTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTTTCTGTCTAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGGAAGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAAAAAAAAAAAAAAA] [+] EMBL CF307768 [AGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATTTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTAGACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGCGTGTTTCTGGGTGTTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTTTCTGTCTAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGGAAGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAAAGGCATTCAACTTGGCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8997#0 CCTCCTCCTCGTCACCTCACCTGCACCTGCACCAACGCGAGAGATCATGGCGAAGAGATC 60 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GTCTCCTGATCCCGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTC 120 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 CTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCC 180 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GAGGACGGACAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGT 240 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TGATCCTTCTTCCAATGGCGGTGGCGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAG 300 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GGGAGTCACCAGGTATGCGTCTCTGCATGGCATCGGTGGACTGGCAGATTTGAGGCCCAT 360 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 CTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTAT 420 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TTGGGGGCTTATGATAGTGAAGAGGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAG 480 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCG 540 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGT 600 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGG 660 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACT 720 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 CAAGAGGAGGCAGCCAAGGCCTATGATCTTGCTGCAATTGAATACCGAGGTGCCAATGCG 780 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAA 840 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 CAGGAACCACAGTTACTGGCACAACTGCAACAAGAGCTACAGGTGGTGCCAGCATTACAT 900 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAA 960 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 GCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCTGAATGCATG 1020 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 AATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGAT 1080 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGG 1140 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TTCAATGATGAGGCTTTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATA 1200 consensus_8997#1 --------------------------------------------AGGGTGCTCCAGTATA 16 **************** consensus_8997#0 ACTGAAGGCGGCAACAGCATGGATAACTCAGGTGTGACAGAATACAATTTGTTTGAGGAA 1260 consensus_8997#1 ACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAA 76 ********************************* ** *********************** consensus_8997#0 TGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGATTTTTTA 1320 consensus_8997#1 TGCAATATTTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTA 136 ******** ******************************************** ****** consensus_8997#0 GATAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCC 1380 consensus_8997#1 GACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCC 196 ** ********************************************************* consensus_8997#0 TGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGTGTGTTTCTGGGTG 1440 consensus_8997#1 TGCCCTCAAAAAATGATCAGTGTGTGCAACTGATTCTCTCTGTGTGCGTGTTTCTGGGTG 256 ********************************************** ************* consensus_8997#0 TTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTCTCT 1500 consensus_8997#1 TTGAAAATCTTGAGATATACAGGGAAGTTTTCAGGTTTTTATCTTGGGGTATATTTTTCT 316 ******************************************************** *** consensus_8997#0 GTCCAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGG-A 1559 consensus_8997#1 GTCTAATGGCACTGCCACAAAGAAGCAAAGCTTCTGTAGGCGTTCTGTTCAGGTGGGGGA 376 *** ****************************************************** * consensus_8997#0 AGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAA-GGCATTCAACTTG 1618 consensus_8997#1 AGATTCATATGCTTCTCCCTATGGTCCTAGTCTCCTAGAAACCCAAAGGCATTCAACTTG 436 ********************************************** ************* consensus_8997#0 GCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAATACCCACAAGGCTGATTGATTAACT 1678 consensus_8997#1 GCATGAGACAAGTGTCTGTGTTCCTTTTCTTGTAAAAAAAAAAAAAAA------------ 484 *********************************** * * ** consensus_8997#0 AGGGAGACATTTTCTCCCTTACCCTAGATTGAGCTAGTTAATTCTGATTACTCAAAAAAT 1738 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TGAATGCTTGAGTAGTACTATAGGTATTCCCACAAGAAAACTCTGGGTAGTTCACAGTTT 1798 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 TATAAGGTAATGGAGCATATGTTATACAGAAATCACAATATGTAAATCTATCTAACTTTC 1858 consensus_8997#1 ------------------------------------------------------------ consensus_8997#0 AGAATAAACTATACTATACATCTTGGTTGAGGC 1891 consensus_8997#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||