cluster # 9

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Oryza sativa
cluster # 9 cluster # 9 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9#0 length = 959 sequences # 1

consensus_9#1 length = 486 sequences # 1

consensusID : consensus_9#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 959
fasta sequence

                              [TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCCCAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAAGCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAATAGTGCAAAGGGCACCTAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTATCTTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTTCCGTTCAGGCGCTTAATTCTACCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACATGATTCAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAAAAAAAAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACCCGCCTGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATATATTCTCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACTTTTCCTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATTACTCTTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTTTTC]

[+] EMBL BE039667             [TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTCCCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCCCAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAAGCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAATAGTGCAAAGGGCACCTAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTATCTTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTTCCGTTCAGGCGCTTAATTCTACCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACATGATTCAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAAAAAAAAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACCCGCCTGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATATATTCTCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACTTTTCCTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATTACTCTTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTTTTC]




>consensus_9#0
TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTC
CCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCC
CAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTC
TTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATC
ATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAA
GCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAA
TAGTGCAAAGGGCACCTAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGGA
TGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTATC
TTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTTCCGTT
CAGGCGCTTAATTCTACCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACATGATT
CAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAAAAAA
AAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACCCGCC
TGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATATATTC
TCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACTTTTC
CTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATTACTC
TTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTTTTC

consensusID : consensus_9#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CGAGACAAGGGGGGCTATGGCCCAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGNTGGAAGGAAAAGCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTTCCTCCTGGGTAGCGCAACCGAATAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACCGCTTTGAGGCTATCTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATGNCCAANGCGNCATATGTTTCCGGTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGGGGGCCTGGT]

[+] EMBL CA765392             [CGAGACAAGGGGGGCTATGGCCCAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGNTGGAAGGAAAAGCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTTCCTCCTGGGTAGCGCAACCGAATAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTGTAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACCGCTTTGAGGCTATCTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATGNCCAANGCGNCATATGTTTCCGGTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGGGGGCCTGGT]




>consensus_9#1
CGAGACAAGGGGGGCTATGGCCCAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGG
CGGATCTCGGGACAATTTCTTCTTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGT
AATTGCAGGGGATACCTTGATCATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGG
TCTTGCCAAGNTGGAAGGAAAAGCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTT
CCTCCTGGGTAGCGCAACCGAATAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTG
TAGAATCATTGATTAGAACGGGATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACT
GAACTTACCGCTTTGAGGCTATCTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATG
NCCAANGCGNCATATGTTTCCGGTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGGGGG
CCTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9#0      TACAAGGGAGGAGAATATGCAGTTGGGATCAAGAATGTCACGATAAATGATAACTTCTTC 60
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      CCTGGGCATTTCCCCGAACGACCCATAATGCCTGGTGTTCTCATGGTTGAGGCTATGGCC 120
consensus_9#1      --------------------------------------CGAGACAAGGGGGGCTATGGCC 22
                                                             *     * **********

consensus_9#0      CAGGTTGGGGGTCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTC 180
consensus_9#1      CAGGNTGGGGGGCTGGTGATGTTGCAGCCTGAAATTGGCGGATCTCGGGACAATTTCTTC 82
                   **** ****** ************************************************

consensus_9#0      TTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATC 240
consensus_9#1      TTTGCAGGAATTGATAAAGTGAGGTTCCGTAAGCCAGTAATTGCAGGGGATACCTTGATC 142
                   ************************************************************

consensus_9#0      ATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGATGGAAGGAAAA 300
consensus_9#1      ATGAGAATGACTCTGACCAAGTATCAGAAAAGATTTGGTCTTGCCAAGNTGGAAGGAAAA 202
                   ************************************************ ***********

consensus_9#0      GCTTACGTTGGTGGTGACCTAGTGTGCGAGGGGGAGTTCCTCCTGGTTAGCGCAACCGAA 360
consensus_9#1      GCTTACNTTGGTGGTGACCTANTATGCGAGGGGGAGTTCCTCCTGGGTAGCGCAACCGAA 262
                   ****** ************** * ********************** *************

consensus_9#0      TAGTGCAAAGGGCACC-TAGTATTGTGTGATTCTCTTGTAGAATCATTGATTAGAACGGG 419
consensus_9#1      TAGTGCAAAGGGCACCCTAGTATTGNGTGATTCTCTTGTAGAATCATTGATTAGAACGGG 322
                   **************** ******** **********************************

consensus_9#0      ATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACGGCTTTGAGGCTAT 479
consensus_9#1      ATGAGGTTCATTGCTTGAGAAGAGTTGAGTTTTGAACTGAACTTACCGCTTTGAGGCTAT 382
                   ********************************************** *************

consensus_9#0      CTTTTCATTTTACCTATTAGGTGAATTGAGTTCAAATGTCCAAAGCGCCATATGTT-CCG 538
consensus_9#1      CTTTTCATTTTACCTATTAAGNGAATTGAGNTCAAATGNCCAANGCGNCATATGTTTCCG 442
                   ******************* * ******** ******* **** *** ******** ***

consensus_9#0      TTCAGGCGCTTAA-TTCTA-CCTATCTGGCTGTGGATGGTGTTGGTAACTTGGAATACAT 596
consensus_9#1      GTCAAGCGCTTNAATTCTAACCTATTCTGGGCTGG--GGGCCTGGT-------------- 486
                    *** ****** * ***** *****   *   ***  **   ****              

consensus_9#0      GATTCAATGCTTTTCCTAAGAATTTGATGAAAAAACAGTGCTTGTTCGGTTGTAAAAAAA 656
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      AAAAAAAAAAAATTTCGAGGGGGTCCCCGCTCCCATTTCTACCTATTTGGCTCCTTTACC 716
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      CGCCTGACTTTTTCGCATTTACAACTCCATCCCAGTTAAACCCGCGGTTCCAATGTATAT 776
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      ATTCTCTGTCTACCTTTTTCCCCTTTTCTATTTTTTTTCTCCCTCTCCTCCTTATTTACT 836
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      TTTCCTTCTCTTCTTTTTCCCTATTTTGATGCATATATTTAGAGCCTAAACCATATTATT 896
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      ACTCTTTACTCCTCCGCCTTTTCATTTATTCCTCCTTCTTCTTTTTTTATTTTACCTTTT 956
consensus_9#1      ------------------------------------------------------------
                                                                               

consensus_9#0      TTC 959
consensus_9#1      ---