Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9006 cluster # 9006       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9006#0 length = 1825 sequences # 1  
consensus_9006#1 length = 741 sequences # 3  
consensus_9006#2 length = 625 sequences # 1  
consensus_9006#3 length = 231 sequences # 1  

consensusID : consensus_9006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1825
fasta sequence
                              [ACACAAACACATTTGCCCTATCTATCCATTACTCCATGTCAGAAGCAATGGCAGTCACCATGCCACCAATGAGAGCGCCAGCTCTAGTTGCAATGCTGGTTGTTGTACTCGTCGCGTTGGTGCGGCGGCGGCGTCACCGGAGCAAGGGCGCCGGCGGCCGGCTGGAGTCGTTGCCACCGGGGCCCGTGGGTTTGCCGGTGATCGGCAACATGCACCAGATGCTCGTGAACAAGCCGGTGTTCCGGTGGGTGCACCGGCTGCTCGCGGACGCCGGCGGGGAGATCGTGTGCGTGCGCCTGGGGCCCGTGCACGTGGTCGCCGTCACGTCCCCGGAGATGGCACGGGAGGTGCTCCGCAAGAACGACGCCGTGTTCGCCGACCGGCCGACGACGTTCGCCGCCGAGTCGTTCAGCGTCGGCTACCGCAGCGCCAGCATCTCGCCGCACGGCGACCAGTGGAGGAAGATGCGGCGGGTGCTCACCGCCGAGATCCTCTCGCCGGCCACCGAACACCGCCTCCGCGGCGCGCGGGGGGAGGAGGCCGACCACCTCGTCCGGTACGTCCTCGTGCGGTGCGGCCGCGACGGCGCCGCCGTCGACGTGCGCCACGTCGCCAGGCACTTCTGCGGCAACGTCATCCGCCGGCTCACCCTAGGGCGCCGCCATTTCCGCGAGCCGCGGGCGGACGACGAGGACGCCGCGGCGCCCGGGCGCGACGAGGCGGAGCACGTGGACGCGCTCTTCGCGACGCTCAACTACCTCGACGCGTTCTGCGTCTCCGACTACTTCCCGGCGCTGGTCGGCCTCGACCTGGACGGCCAAGAGAAGGTCATCAAGAAGGTGATGAGGACGCTGAACAGGCTGCACGACCCCGTGGTGGAGGAGAGGGTGGAGGAGTGGCGGCTGCTGCGGAAGGCCGGCGAGCGGCGCGACGTCGCCGACTTCCTCGACGTGCTCGCCTCGCTCGACGACGCGGCGGGGCGGCCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCATAGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTGGAGAGGGTTGAGCTGCGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGTTGGCTGCTCACCTCTACGGCGCCGGCAAGTAGTTTTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAGCGAGCGGAGCAGTACGTTAGCAGCTGTGTAGTGTATGTACCGGCCAGCATGCAGCAATAAACTGTTCATCGATCGTACAGTTATAGTAATAATACAGATGGT]

[+] EMBL AK119569             [ACACAAACACATTTGCCCTATCTATCCATTACTCCATGTCAGAAGCAATGGCAGTCACCATGCCACCAATGAGAGCGCCAGCTCTAGTTGCAATGCTGGTTGTTGTACTCGTCGCGTTGGTGCGGCGGCGGCGTCACCGGAGCAAGGGCGCCGGCGGCCGGCTGGAGTCGTTGCCACCGGGGCCCGTGGGTTTGCCGGTGATCGGCAACATGCACCAGATGCTCGTGAACAAGCCGGTGTTCCGGTGGGTGCACCGGCTGCTCGCGGACGCCGGCGGGGAGATCGTGTGCGTGCGCCTGGGGCCCGTGCACGTGGTCGCCGTCACGTCCCCGGAGATGGCACGGGAGGTGCTCCGCAAGAACGACGCCGTGTTCGCCGACCGGCCGACGACGTTCGCCGCCGAGTCGTTCAGCGTCGGCTACCGCAGCGCCAGCATCTCGCCGCACGGCGACCAGTGGAGGAAGATGCGGCGGGTGCTCACCGCCGAGATCCTCTCGCCGGCCACCGAACACCGCCTCCGCGGCGCGCGGGGGGAGGAGGCCGACCACCTCGTCCGGTACGTCCTCGTGCGGTGCGGCCGCGACGGCGCCGCCGTCGACGTGCGCCACGTCGCCAGGCACTTCTGCGGCAACGTCATCCGCCGGCTCACCCTAGGGCGCCGCCATTTCCGCGAGCCGCGGGCGGACGACGAGGACGCCGCGGCGCCCGGGCGCGACGAGGCGGAGCACGTGGACGCGCTCTTCGCGACGCTCAACTACCTCGACGCGTTCTGCGTCTCCGACTACTTCCCGGCGCTGGTCGGCCTCGACCTGGACGGCCAAGAGAAGGTCATCAAGAAGGTGATGAGGACGCTGAACAGGCTGCACGACCCCGTGGTGGAGGAGAGGGTGGAGGAGTGGCGGCTGCTGCGGAAGGCCGGCGAGCGGCGCGACGTCGCCGACTTCCTCGACGTGCTCGCCTCGCTCGACGACGCGGCGGGGCGGCCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCATAGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTGGAGAGGGTTGAGCTGCGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGTTGGCTGCTCACCTCTACGGCGCCGGCAAGTAGTTTTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAGCGAGCGGAGCAGTACGTTAGCAGCTGTGTAGTGTATGTACCGGCCAGCATGCAGCAATAAACTGTTCATCGATCGTACAGTTATAGTAATAATACAGATGGT]


>consensus_9006#0 ACACAAACACATTTGCCCTATCTATCCATTACTCCATGTCAGAAGCAATGGCAGTCACCA TGCCACCAATGAGAGCGCCAGCTCTAGTTGCAATGCTGGTTGTTGTACTCGTCGCGTTGG TGCGGCGGCGGCGTCACCGGAGCAAGGGCGCCGGCGGCCGGCTGGAGTCGTTGCCACCGG GGCCCGTGGGTTTGCCGGTGATCGGCAACATGCACCAGATGCTCGTGAACAAGCCGGTGT TCCGGTGGGTGCACCGGCTGCTCGCGGACGCCGGCGGGGAGATCGTGTGCGTGCGCCTGG GGCCCGTGCACGTGGTCGCCGTCACGTCCCCGGAGATGGCACGGGAGGTGCTCCGCAAGA ACGACGCCGTGTTCGCCGACCGGCCGACGACGTTCGCCGCCGAGTCGTTCAGCGTCGGCT ACCGCAGCGCCAGCATCTCGCCGCACGGCGACCAGTGGAGGAAGATGCGGCGGGTGCTCA CCGCCGAGATCCTCTCGCCGGCCACCGAACACCGCCTCCGCGGCGCGCGGGGGGAGGAGG CCGACCACCTCGTCCGGTACGTCCTCGTGCGGTGCGGCCGCGACGGCGCCGCCGTCGACG TGCGCCACGTCGCCAGGCACTTCTGCGGCAACGTCATCCGCCGGCTCACCCTAGGGCGCC GCCATTTCCGCGAGCCGCGGGCGGACGACGAGGACGCCGCGGCGCCCGGGCGCGACGAGG CGGAGCACGTGGACGCGCTCTTCGCGACGCTCAACTACCTCGACGCGTTCTGCGTCTCCG ACTACTTCCCGGCGCTGGTCGGCCTCGACCTGGACGGCCAAGAGAAGGTCATCAAGAAGG TGATGAGGACGCTGAACAGGCTGCACGACCCCGTGGTGGAGGAGAGGGTGGAGGAGTGGC GGCTGCTGCGGAAGGCCGGCGAGCGGCGCGACGTCGCCGACTTCCTCGACGTGCTCGCCT CGCTCGACGACGCGGCGGGGCGGCCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCA TAGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGG AGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCG GCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCA TCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGG CCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCG TCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTC ACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGG CGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGG GTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGC CGGCCGGCGTGGAGAGGGTTGAGCTGCGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGC CGCTGGTTTTGCAGGCGACGCCGCGGTTGGCTGCTCACCTCTACGGCGCCGGCAAGTAGT TTTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAGCGAGCGGAGCAGTACGT TAGCAGCTGTGTAGTGTATGTACCGGCCAGCATGCAGCAATAAACTGTTCATCGATCGTA CAGTTATAGTAATAATACAGATGGT



consensusID : consensus_9006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 741
fasta sequence
                              [AAGGGAATACCTGCGGCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCATCGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGG-TGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTGAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGGTGGCTGCTCACCTCTACGGCGCCGGCAAAGTAGTTTTGCGCG-CGATTAGGTGTGCAATACGT]

[+] EMBL CB965199             [AAGGGAATACCTGCGGCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCATCGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGG TGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTGAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGGTGGCTGCTCACCTCTACGGCGCCGGCAAAGTAGTTTTGCGCG CGATTAGGTGTGCAATACGT]
[+] EMBL BU673612             [                          CGTGGAGGAGATCAAGGCGCAGACCATCGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGG TGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTGAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAAGCGACGCCGAGGTTGGCTGCTCACCTCTACGGCGCCGGGCAAGTAGTTTTGCGCGCCGATTAGGTGTTAAATA   ]
[+] EMBL CB965584             [                             GGAGGAGATCAAGGCGCAGACCATCGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAGGCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCGCCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTTGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGACGGCGTGAAGAGGGTTGAG                                                                                                                               ]


>consensus_9006#1 AAGGGAATACCTGCGGCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCATCGACATC ATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGGAGATGATG AACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCGGCCGCGAC CGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCATCCGCGAG GCCTTCCGCCTGCACCCCTACCACCCCTTCAACCCGCCGCGCGTCGCCATGGCCGACACC ACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCCGCGTCGGGCTC GGCCGGAACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCGGAGCGTCACCTGTCG CCGTACCCTGCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTCACGGAGGCGGAGCTG CGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGGGTACCCTG ATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGC GTGAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTT TTGCAGGCGACGCCGCGGGTGGCTGCTCACCTCTACGGCGCCGGCAAAGTAGTTTTGCGC GCGATTAGGTGTGCAATACGT



consensusID : consensus_9006#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [GGCAGCAGCGGTCGGCTGGGAGCGGGCATGGTGCAGGAGAGCGACGTCGCCACGCGTGTAGCTCATGGGGTGCATCCGCGAGGCGTTTCGCCTGCACTTCTACCAGCCCGTTCGTCCGCCTGGCGGTGTCATGGACGACACCACTATCGTATGCTCCACGGTCGCCAAGGGCAGCCATATCCTCCTCAGGCGCGTCGGGGTCGGCCGGGATCTCGGGGTGTGCGACCAACCTCTCGAGTTCCGGGCGGAGCGTCACCTGTCGCCGTACGCTGGGCGCGGCCGTGGCGACGCTGGTGTGGTGGCGCTCACGGAGGCTGAGCTGCGGTTCGTGTCGTACAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCGGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTAAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGTGGTTGGCTGCTCACCTCTACGGCGCCGGCAAGTAGTATTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAACGAGCGGAGCAGTACGTTAGCAGCTGTG]

[+] EMBL CB967136             [GGCAGCAGCGGTCGGCTGGGAGCGGGCATGGTGCAGGAGAGCGACGTCGCCACGCGTGTAGCTCATGGGGTGCATCCGCGAGGCGTTTCGCCTGCACTTCTACCAGCCCGTTCGTCCGCCTGGCGGTGTCATGGACGACACCACTATCGTATGCTCCACGGTCGCCAAGGGCAGCCATATCCTCCTCAGGCGCGTCGGGGTCGGCCGGGATCTCGGGGTGTGCGACCAACCTCTCGAGTTCCGGGCGGAGCGTCACCTGTCGCCGTACGCTGGGCGCGGCCGTGGCGACGCTGGTGTGGTGGCGCTCACGGAGGCTGAGCTGCGGTTCGTGTCGTACAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCGGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTAAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGTGGTTGGCTGCTCACCTCTACGGCGCCGGCAAGTAGTATTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAACGAGCGGAGCAGTACGTTAGCAGCTGTG]


>consensus_9006#2 GGCAGCAGCGGTCGGCTGGGAGCGGGCATGGTGCAGGAGAGCGACGTCGCCACGCGTGTA GCTCATGGGGTGCATCCGCGAGGCGTTTCGCCTGCACTTCTACCAGCCCGTTCGTCCGCC TGGCGGTGTCATGGACGACACCACTATCGTATGCTCCACGGTCGCCAAGGGCAGCCATAT CCTCCTCAGGCGCGTCGGGGTCGGCCGGGATCTCGGGGTGTGCGACCAACCTCTCGAGTT CCGGGCGGAGCGTCACCTGTCGCCGTACGCTGGGCGCGGCCGTGGCGACGCTGGTGTGGT GGCGCTCACGGAGGCTGAGCTGCGGTTCGTGTCGTACAGCACCGGGAGGCGGGGGTGCCC CGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCGGGGGTT CGAGTGGAGCAAGCCGGCCGGCGTAAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCT GGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGTGGTTGGCTGCTCACCTCTACGG CGCCGGCAAGTAGTATTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAACGA GCGGAGCAGTACGTTAGCAGCTGTG



consensusID : consensus_9006#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence
                              [TGCGCTGCCTTCCTGCTGCACCCCTACCTATCTCTTTCTATCCTGCCGCGCGTCGCCATGGCTGACACCACCAATCGCGTGTACACCATCCCCAATGGCCAGCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGCAACCCCAGGGTGTGGGACGCACCGCTCGAGTTCCGGCCGTGAGCTGTCACCTGTCGCCGTACCCTTGCAGGCGGACGTGGCGACGCCGGCGTGGT]

[+] EMBL BU673143             [TGCGCTGCCTTCCTGCTGCACCCCTACCTATCTCTTTCTATCCTGCCGCGCGTCGCCATGGCTGACACCACCAATCGCGTGTACACCATCCCCAATGGCCAGCAGGTCATCCTCAGCCGCGTCGGGCTCGGCCGGCAACCCCAGGGTGTGGGACGCACCGCTCGAGTTCCGGCCGTGAGCTGTCACCTGTCGCCGTACCCTTGCAGGCGGACGTGGCGACGCCGGCGTGGT]


>consensus_9006#3 TGCGCTGCCTTCCTGCTGCACCCCTACCTATCTCTTTCTATCCTGCCGCGCGTCGCCATG GCTGACACCACCAATCGCGTGTACACCATCCCCAATGGCCAGCAGGTCATCCTCAGCCGC GTCGGGCTCGGCCGGCAACCCCAGGGTGTGGGACGCACCGCTCGAGTTCCGGCCGTGAGC TGTCACCTGTCGCCGTACCCTTGCAGGCGGACGTGGCGACGCCGGCGTGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      ACACAAACACATTTGCCCTATCTATCCATTACTCCATGTCAGAAGCAATGGCAGTCACCA 60
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TGCCACCAATGAGAGCGCCAGCTCTAGTTGCAATGCTGGTTGTTGTACTCGTCGCGTTGG 120
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TGCGGCGGCGGCGTCACCGGAGCAAGGGCGCCGGCGGCCGGCTGGAGTCGTTGCCACCGG 180
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      GGCCCGTGGGTTTGCCGGTGATCGGCAACATGCACCAGATGCTCGTGAACAAGCCGGTGT 240
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TCCGGTGGGTGCACCGGCTGCTCGCGGACGCCGGCGGGGAGATCGTGTGCGTGCGCCTGG 300
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      GGCCCGTGCACGTGGTCGCCGTCACGTCCCCGGAGATGGCACGGGAGGTGCTCCGCAAGA 360
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      ACGACGCCGTGTTCGCCGACCGGCCGACGACGTTCGCCGCCGAGTCGTTCAGCGTCGGCT 420
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      ACCGCAGCGCCAGCATCTCGCCGCACGGCGACCAGTGGAGGAAGATGCGGCGGGTGCTCA 480
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      CCGCCGAGATCCTCTCGCCGGCCACCGAACACCGCCTCCGCGGCGCGCGGGGGGAGGAGG 540
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      CCGACCACCTCGTCCGGTACGTCCTCGTGCGGTGCGGCCGCGACGGCGCCGCCGTCGACG 600
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TGCGCCACGTCGCCAGGCACTTCTGCGGCAACGTCATCCGCCGGCTCACCCTAGGGCGCC 660
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      GCCATTTCCGCGAGCCGCGGGCGGACGACGAGGACGCCGCGGCGCCCGGGCGCGACGAGG 720
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      CGGAGCACGTGGACGCGCTCTTCGCGACGCTCAACTACCTCGACGCGTTCTGCGTCTCCG 780
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      ACTACTTCCCGGCGCTGGTCGGCCTCGACCTGGACGGCCAAGAGAAGGTCATCAAGAAGG 840
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TGATGAGGACGCTGAACAGGCTGCACGACCCCGTGGTGGAGGAGAGGGTGGAGGAGTGGC 900
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      GGCTGCTGCGGAAGGCCGGCGAGCGGCGCGACGTCGCCGACTTCCTCGACGTGCTCGCCT 960
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      --------AAGGGAATACCTGCGGCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCA 52
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      CGCTCGACGACGCGGCGGGGCGGCCGCTGCTCACCGTGGAGGAGATCAAGGCGCAGACCA 1020
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      TCGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGG 112
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TAGACATCATGATCGCCACCGTGGACAACCCATCGAACGCAGTGGAGTGGGCGCTGGCGG 1080
consensus_9006#2      ------------------------------------------------------------
                                                                                  

consensus_9006#1      AGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCG 172
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      AGATGATGAACAAGCCGGAGGTGATGCGGAAGGCCATGGACGAGCTGGACACGGTGGTCG 1140
consensus_9006#2      ----------------------------------------------GGCAGCAGCGGTCG 14
                                                                                  

consensus_9006#1      GCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCA 232
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      GCCGCGACCGGCTGGTGCAGGAGAGCGACGTCCGCGACCTCAACTACCTCAAGGCGTGCA 1200
consensus_9006#2      GCTGGGAGCGGGCATGGTGCAGGAGAGCGACGTCGCCACGCGTGTAGCTCATGGGGTGCA 74
                                                                                  

consensus_9006#1      TCCGCGAGGCCTTCCGCCTGCACCCCTACC-ACCCCTT--CAACCCGCCGCGCGTCGCCA 289
consensus_9006#3      --TGCGCTGCCTTCCTGCTGCACCCCTACCTATCTCTTTCTATCCTGCCGCGCGTCGCCA 58
consensus_9006#0      TCCGCGAGGCCTTCCGCCTGCACCCCTACC-ACCCCTT--CAACCCGCCGCGCGTCGCCA 1257
consensus_9006#2      TCCGCGAGGCGTTTCGCCTGCACTTCTACCAGCCCGTT--CGTCC-GCCTGGCGGTGTCA 131
                         ***  ** ** *  ******  *****   *  **     ** ***  ***  * **

consensus_9006#1      TGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCC 349
consensus_9006#3      TGGCTGACACCACCAATCGCGTGTACACCATCCCCAATGGCCAGCAGGTCATCCTCAGCC 118
consensus_9006#0      TGGCCGACACCACCATCGCCGGCTACACCATCCCCAAGGGCAGCCAGGTCATCCTCAGCC 1317
consensus_9006#2      TGGACGACACCACTATCGTATGCTCCACGGTCGCCAAGGGCAGCCATATCCTCCTCAGGC 191
                      ***  ******** *        * ***  ** **** ***   **  ** ******* *

consensus_9006#1      GCGTCGGGCTCGGCCGG-AACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCG-GA 407
consensus_9006#3      GCGTCGGGCTCGGCCGGCAACCCCAGGGTGTGGGACGCACCGCTCGAGTTCCGGCCGTGA 178
consensus_9006#0      GCGTCGGGCTCGGCCGG-AACCCCAGGGTGTGGGACGACCCGCTCGAGTTCCGGCCG-GA 1375
consensus_9006#2      GCGTCGGGGTCGGCCGG-GATCTCGGGGTGTGCGACCAACCTCTCGAGTTCCGGGCG-GA 249
                      ******** ********  * * * ******* ***   ** ************ ** **

consensus_9006#1      GC-GTCACCTGTCGCCGTACCCT-GCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTC 465
consensus_9006#3      GCTGTCACCTGTCGCCGTACCCTTGCAGGCGGACGTGGCGACGCCGGCGTGGT------- 231
consensus_9006#0      GC-GTCACCTGTCGCCGTACCCT-GCAGGCGGCCGTGGCGACGCCGGCGTGGTGGCGCTC 1433
consensus_9006#2      GC-GTCACCTGTCGCCGTACGCT-GGGCGCGGCCGTGGCGACGCTGGTGTGGTGGCGCTC 307
                      ** ***************** ** *   **** *********** ** *****       

consensus_9006#1      ACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTG 525
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      ACGGAGGCGGAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTG 1493
consensus_9006#2      ACGGAGGCTGAGCTGCGGTTCGTGTCGTACAGCACCGGGAGGCGGGGGTGCCCCGGGGTG 367
                                                                                  

consensus_9006#1      TCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGG 585
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      TCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCAGGGGTTCGAGTGG 1553
consensus_9006#2      TCGCTGGGTACCCTGATCACCGTGACGCTGTTCGCGAGGCTCCTGCGGGGGTTCGAGTGG 427
                                                                                  

consensus_9006#1      AGCAAGCCGGCCGGCGTGAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTG 645
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      AGCAAGCCGGCCGGCGTGGAGAGGGTTGAGCTGCGGGAGGAGGCGGCGAGCCTGGTGTTG 1613
consensus_9006#2      AGCAAGCCGGCCGGCGTAAAGAGGGTTGAGCTACGGGAGGAGGCGGCGAGCCTGGTGTTG 487
                                                                                  

consensus_9006#1      GCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGGTGGCTGCTCACCTCTACGGCGCCGGC 705
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      GCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGTTGGCTGCTCACCTCTACGGCGCCGGC 1673
consensus_9006#2      GCTCAGCCGCTGGTTTTGCAGGCGACGCCGTGGTTGGCTGCTCACCTCTACGGCGCCGGC 547
                                                                                  

consensus_9006#1      AAAGTAGTTTTGCGCGCGATTAGGTGTGCAATACGT------------------------ 741
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      AA-GTAGTTTTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAGCGAGCGGAG 1732
consensus_9006#2      AA-GTAGTATTGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAACGAGCGGAG 606
                                                                                  

consensus_9006#1      ------------------------------------------------------------
consensus_9006#3      ------------------------------------------------------------
consensus_9006#0      CAGTACGTTAGCAGCTGTGTAGTGTATGTACCGGCCAGCATGCAGCAATAAACTGTTCAT 1792
consensus_9006#2      CAGTACGTTAGCAGCTGTG----------------------------------------- 625
                                                                                  

consensus_9006#1      ---------------------------------
consensus_9006#3      ---------------------------------
consensus_9006#0      CGATCGTACAGTTATAGTAATAATACAGATGGT 1825
consensus_9006#2      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)