These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9008#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2236 fasta sequence [ATTGGAAAAAGAGAAATAGAAAAGGAAGCGCACCACCGCTCTCGGCTCGCCTTCCCTTGGTTCCCGCACCTTCTCCTCCGCATCGAGGCAAATCAATCAATCCAATCCATCCCACACACCGCCCATCTCCCTGGCGGGCAGCCTCGGCCTCGCGAGGGAGGGGAGGAGGAGGAGAGTGGCGGCGGCGGCGGCGCGCCATGGCGTTCCTGCTCGGCGCCTTCCTCGGGCTGGTGCTCGGCGTCGCCGTTGTCATGGCGTTCGCGCGCCTCGAGAACACCCGCGCTGAGCAGCGCCGCGAGCTGGCTGCTACTGTTTCATCCTTCTCAAAGTTGACTGTAGAAGATTTAAGGAAACTAATTCCTCTTGAGTTATATCCATCATGGGTGTCTTTCACTCAAAAGCAAAAGCTTAAATGGCTGAATCAAGAATTGGTAAAAATCTGGCCATTTGTCAATGAGGCTGCATCAGAACTGATAAAAACTTCTGTGGAGCCTATTTTTGAGCAGTACAAGTCATTCATTTTGTCCTCACTCCATTTCTCAAAGTTGACACTTGGAACAGTTGCCCCTCAGTTTACAGGAGTTTCAATTTTGGATAGTGATAGTTCTGGTATCACTATGGAGCTTGAGTTGCAATGGGATGGCAATCCAAATATAGTACTGGACATTCAAACAACACTTGGAATCTCACTTCCTGTGCAGGTGAAAAATATTGGATTCACAGGAGTACTTCGCTTAGTTTTTAAGCCTCTGGTTGCAGAACTGCCTTGCTTTGGAGCTGTTTGCTGTTCTTTGAGAGAGAAGAGCAAGGTCGATTTTACCCTCAAGGTTATTGGTGGTGAGATGACAGCAATTCCTGGAATTTCTGATGCAATTGAGGGAACGATACGTGATACCATTGAGGATCAGTTGACATGGCCTAATCGCATAGTTGTACCTATTGTGCCTGGAGATTATAGTGACTTGGAGCTGAAACCAGTTGGACTATTAGAAGTAAAACTTGTGGAAGCTAGGGACTTGACGAACAAGGATCTTGTGGGGAAGTCTGACCCTTTTGCTGTGTTATACATTCGGCCATTGCAAGATAAAATGAAGAAAAGCAAAACAATAAATAATGATTTGAACCCCATCTGGAATGAGCACTACGAATTTGTGGTCGAGGACACATCTACCCAGCGCTTGACTGTGAAAATTTATGATGATGAAGGACTCCAGGCATCTGAGCTTATTGGCTGTGCTAGAGTGGACTTGTCTGATCTTCAGCCTGGAAAAGTCAAAGAAGTTTGGTTGGACCTTGTCAAGGACCTGGAAATCCAGCGGGATAAGAAACGTCGCGGGCAGGTACACCTGGAGCTCCTGTATTACCCTTTTGGTAAACAGGAAGGGGTTTCCAATCCTTTTGCAGATCAGATTCAGTTAACTTCTTTGGAGAAGGTCCTCAAGACTGAGTCTAACGGATTTGATGTTAACCAGAGGAAAAATGTTATTATGAGAGGAGTCCTATCAGTAACTGTTATCTCAGCAGAGGACTTGCCACCAATGGATGTGATGGGCAAGGCTGACCCATTTGTAGTCCTGTACCTGAAGAAGGGAGAAACCAAAAAGAAGACAAGGGTTGTAACTGAGACACTGAATCCAATATGGAATCAGACGTTTGATTTTGTTGTTGAAGATGCCTTGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGGATTACATAGGGAGATGC-ATCTTGACA-CTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGAACTTGCACTTCAAGTGGACGCCGCAGCCAATTTATCGTGATCGTGATCGGGACCAGTGAAATCTGTGTAGATACATCACGTCAAGCAGCTGATAAATATTTCTTC-CCCTACGGTGCCTGTACATTAGTTTTTC-TGTACAGTTAATTCACTTATCTTGTAGCAACAAGGTGTAATGGAATAAAAGAATGGTGGTTTCATGTTCCGACGGAAATGCGATGTGCTATGAATGGAGGGTTGCAGAAAGATGGATGGTAACACGGGGAGATGGGTTACCCAAGTATGGAAACATTAAGTTCATCATGCAAGCAGATACTTTATGCATCTTCTACTGGTAAAACTAAACGTGTTTGTCTTTAAAATGCAACTTGTAATATAATTCCTTGTACTAACAATTACTACCTCCGTCCCA] [+] EMBL AK069706 [ATTGGAAAAAGAGAAATAGAAAAGGAAGCGCACCACCGCTCTCGGCTCGCCTTCCCTTGGTTCCCGCACCTTCTCCTCCGCATCGAGGCAAATCAATCAATCCAATCCATCCCACACACCGCCCATCTCCCTGGCGGGCAGCCTCGGCCTCGCGAGGGAGGGGAGGAGGAGGAGAGTGGCGGCGGCGGCGGCGCGCCATGGCGTTCCTGCTCGGCGCCTTCCTCGGGCTGGTGCTCGGCGTCGCCGTTGTCATGGCGTTCGCGCGCCTCGAGAACACCCGCGCTGAGCAGCGCCGCGAGCTGGCTGCTACTGTTTCATCCTTCTCAAAGTTGACTGTAGAAGATTTAAGGAAACTAATTCCTCTTGAGTTATATCCATCATGGGTGTCTTTCACTCAAAAGCAAAAGCTTAAATGGCTGAATCAAGAATTGGTAAAAATCTGGCCATTTGTCAATGAGGCTGCATCAGAACTGATAAAAACTTCTGTGGAGCCTATTTTTGAGCAGTACAAGTCATTCATTTTGTCCTCACTCCATTTCTCAAAGTTGACACTTGGAACAGTTGCCCCTCAGTTTACAGGAGTTTCAATTTTGGATAGTGATAGTTCTGGTATCACTATGGAGCTTGAGTTGCAATGGGATGGCAATCCAAATATAGTACTGGACATTCAAACAACACTTGGAATCTCACTTCCTGTGCAGGTGAAAAATATTGGATTCACAGGAGTACTTCGCTTAGTTTTTAAGCCTCTGGTTGCAGAACTGCCTTGCTTTGGAGCTGTTTGCTGTTCTTTGAGAGAGAAGAGCAAGGTCGATTTTACCCTCAAGGTTATTGGTGGTGAGATGACAGCAATTCCTGGAATTTCTGATGCAATTGAGGGAACGATACGTGATACCATTGAGGATCAGTTGACATGGCCTAATCGCATAGTTGTACCTATTGTGCCTGGAGATTATAGTGACTTGGAGCTGAAACCAGTTGGACTATTAGAAGTAAAACTTGTGGAAGCTAGGGACTTGACGAACAAGGATCTTGTGGGGAAGTCTGACCCTTTTGCTGTGTTATACATTCGGCCATTGCAAGATAAAATGAAGAAAAGCAAAACAATAAATAATGATTTGAACCCCATCTGGAATGAGCACTACGAATTTGTGGTCGAGGACACATCTACCCAGCGCTTGACTGTGAAAATTTATGATGATGAAGGACTCCAGGCATCTGAGCTTATTGGCTGTGCTAGAGTGGACTTGTCTGATCTTCAGCCTGGAAAAGTCAAAGAAGTTTGGTTGGACCTTGTCAAGGACCTGGAAATCCAGCGGGATAAGAAACGTCGCGGGCAGGTACACCTGGAGCTCCTGTATTACCCTTTTGGTAAACAGGAAGGGGTTTCCAATCCTTTTGCAGATCAGATTCAGTTAACTTCTTTGGAGAAGGTCCTCAAGACTGAGTCTAACGGATTTGATGTTAACCAGAGGAAAAATGTTATTATGAGAGGAGTCCTATCAGTAACTGTTATCTCAGCAGAGGACTTGCCACCAATGGATGTGATGGGCAAGGCTGACCCATTTGTAGTCCTGTACCTGAAGAAGGGAGAAACCAAAAAGAAGACAAGGGTTGTAACTGAGACACTGAATCCAATATGGAATCAGACGTTTGATTTTGTTGTTGAAGATGCCTTGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGGATTACATAGGGAGATGC ATCTTGACA CTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGAACTTGCACTTCAAGTGGACGCCGCAGCCAATTTATCGTGATCGTGATCGGGACCAGTGAAATCTGTGTAGATACATCACGTCAAGCAGCTGATAAATATTTCTTC CCCTACGGTGCCTGTACATTAGTTTTTC TGTACAGTTAATTCACTTATCTTGTAGCAACAAGGTGTAATGGAATAAAAGAATGGTGGTTTCATGTTCCGACGGAAATGCGATGTGCTGTGAATGGAGGGTTGCAGAAAGATGGATGGTAACACGGGGAGATGGGTTACCCAAGTATGGAAACATTAAGTTCATCATGCAAGCAGATACTTTATGCATCTTCTACTGGTAAAACTAAACGTGTTTGTCTTTAAAATGCAACTTGTAATATAATTCCTTGTACTAACAATTACTACCTCCGTCCCA] [+] EMBL AK119574 [ TTGGAAAAAGAGAAATAGAAAAGGAAGCGCACCACCGCTCTCGGCTCGCCTTCCCTTGGTTCCCGCACCTTCTCCTCCGCATCGAGGCAAATCAATCAATCCAATCCATCCCACACACCGCCCATCTCCCTGGCGGGCAGCCTCGGCCTCGCGAGGGAGGGGAGGAGGAGGAGAGTGGCGGCGGCGGCGGCGCGCCATGGCGTTCCTGCTCGGCGCCTTCCTCGGGCTGGTGCTCGGCGTCGCCGTTGTCATGGCGTTCGCGCGCCTCGAGAACACCCGCGCTGAGCAGCGCCGCGAGCTGGCTGCTACTGTTTCATCCTTCTCAAAGTTGACTGTAGAAGATTTAAGGAAACTAATTCCTCTTGAGTTATATCCATCATGGGTGTCTTTCACTCAAAAGCAAAAGCTTAAATGGCTGAATCAAGAATTGGTAAAAATCTGGCCATTTGTCAATGAGGCTGCATCAGAACTGATAAAAACTTCTGTGGAGCCTATTTTTGAGCAGTACAAGTCATTCATTTTGTCCTCACTCCATTTCTCAAAGTTGACACTTGGAACAGTTGCCCCTCAGTTTACAGGAGTTTCAATTTTGGATAGTGATAGTTCTGGTATCACTATGGAGCTTGAGTTGCAATGGGATGGCAATCCAAATATAGTACTGGACATTCAAACAACACTTGGAATCTCACTTCCTGTGCAGGTGAAAAATATTGGATTCACAGGAGTACTTCGCTTAGTTTTTAAGCCTCTGGTTGCAGAACTGCCTTGCTTTGGAGCTGTTTGCTGTTCTTTGAGAGAGAAGAGCAAGGTCGATTTTACCCTCAAGGTTATTGGTGGTGAGATGACAGCAATTCCTGGAATTTCTGATGCAATTGAGGGAACGATACGTGATACCATTGAGGATCAGTTGACATGGCCTAATCGCATAGTTGTACCTATTGTGCCTGGAGATTATAGTGACTTGGAGCTGAAACCAGTTGGACTATTAGAAGTAAAACTTGTGGAAGCTAGGGACTTGACGAACAAGGATCTTGTGGGGAAGTCTGACCCTTTTGCTGTGTTATACATTCGGCCATTGCAAGATAAAATGAAGAAAAGCAAAACAATAAATAATGATTTGAACCCCATCTGGAATGAGCACTACGAATTTGTGGTCGAGGACACATCTACCCAGCGCTTGACTGTGAAAATTTATGATGATGAAGGACTCCAGGCATCTGAGCTTATTGGCTGTGCTAGAGTGGACTTGTCTGATCTTCAGCCTGGAAAAGTCAAAGAAGTTTGGTTGGACCTTGTCAAGGACCTGGAAATCCAGCGGGATAAGAAACGTCGCGGGCAGGTACACCTGGAGCTCCTGTATTACCCTTTTGGTAAACAGGAAGGGGTTTCCAATCCTTTTGCAGATCAGATTCAGTTAACTTCTTTGGAGAAGGTCCTCAAGACTGAGTCTAACGGATTTGATGTTAACCAGAGGAAAAATGTTATTATGAGAGGAGTCCTATCAGTAACTGTTATCTCAGCAGAGGACTTGCCACCAATGGATGTGATGGGCAAGGCTGACCCATTTGTAGTCCTGTACCTGAAGAAGGGAGAAACCAAAAAGAAGACAAGGGTTGTAACTGAGACACTGAATCCAATATGGAATCAGACGTTTGATTTTGTTGTTGAAGATGCCTTGCATGATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGGATTACATAGGGAGATGC ATCTTGACA CTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGAACTTGCACTTCAAGTGGACGCCGCAGCCAATTTATCGTGATCGTGATCGGGACCAGTGAAATCTGTGTAGATACATCACGTCAAGCAGCTGATAAATATTTCTTC CCCTACGGTGCCTGTACATTAGTTTTTC TGTACAGTTAATTCACTTATCTTGTAGCAACAAGGTGTAATGGAATAAAAGAATGGTGGTTTCATGTTCCGACGGAAATGCGATGTGCTATGAATGG ] [+] EMBL CB674323 [ ACCTTCCCTTCCGCATCGAGGCAAATCAATCAATCCAATCCATCCCACACACCGCCCATCTCCCTGGCGGGCAGCCTCGGCCTCGCGAGGGAGGGGAGGAGGAGGAGAGTGGCGGCGGCGGCGGCGCGCCATGGCGTTCCTGCTCGGCGCCTTCCTCGGGCTGGTGCTCGGCGTCCCCGTTGTCATGGCGTTCGCGCGCCTCGAGAACACCCGCGCTGAGCAGCGCCGCGAGCTGGCTGCTACTGTTTCATCCTTCTCAAAGTTGACTGTAGAAGATTTAAGGAAACTAATTCCTCTTGAGTTATATCCATCATGGGTGTCTTTCACTCAAAAGCAAAAGCTTAAATGGCTGAATCAAGAATTGGTAAAAATCTGGCCATTTGTCAATGAGGCTGCATCAGAACTGATAAAAACTTCTGTGGAGCCTATTTTTGAGCAGTACAAGTCATTCATTTTGTCCTCACTCCATTTCTCAAAGTTGACACTTGGAACAGTTGCCCCTCAGTTTACAGGAGTTTCAATTTTGGATAGTGATAGTTCTGGTATCACTATGGAGCTTGAGTTGCAATGGGATGGCAATCCAAATATAGTACTGGACATTCAAACAACACTTGGAATCTCACTTCCTGTGCAGGTGAAAAATATTGGATTCACAAGAGTACTTCGCTTAGTTTTTAAGCCTCTGGTTGCAGAACTGC ] [+] EMBL C28110 [ TGACTTGGAGCTGAAACCAGTTGGACTATTAGAAGTAAAACTTGTGGAAGCTAGGGACTTGACGAACAAGGATCTTGTGGGGAAGTCTGACCCTTTTGCTGTGTTATACATTCGGCCATTGCAAGATAAAATGAAGAAAAGCAAAACAATAAATAATGATTTGAACCCCATCTGGAATGAGCACTACGAATTTGTGGTCGAGGACACATCTACCCAGCGCTTGACTGTGAAAATTTATGATGATGAAGGACTCCAGGCATCTGAGCTTATTGGCTGTGCTAGAGTGGACTTGTCTGATCTTCAGCCTGGAAAAGTCAAAGAAGTTTGGTTGGACCTTGTCAAGGACCTGGAAATCCAGCGGGATAAGAAACGTCGCGGGCAGGTACACCTGGAGCTCCTGTATTACCCTTTTGGTAAACAGG AGGGG TTCC ATCCTTTTGCAG TCAGATca ] [+] EMBL BI811680 [ CACTGAATCCCATATGGAATCAGAC TTTGATTTT TTGTTGAAGAT CC TGCATGATTTACTCATGGTGGAA TATGGGATCATGATACGTTTGGAAAGGATTACATAGGGAGATGCAATCTTGACACCTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGAACTTGCACTTCAAGTGGAC CC CAGCCAATTTATCGTGATCGTGATCGGGACCAGTGAAATCTGTGTAGATACATCACGTCAAGCAGCTGATAAATATTTCTTC CCCTACGGTGCCTGTACATTAGTTTTTC TGTACAGTTAATTCACTTATCTTGTAGC ACAAGGTGTAATGGAATAAAAGAATGGTGGTTTCATGTTCCGACGGAAATGCGATGTGCTATGAATGGAGGGTT CAGAAAGATGGATGGTAACACGGGGAGATGGGTTACCCAAGTATGGAAACATTAAGTTCATCATGCAAGCAGATACTTTATcaaaaaa ] [-] EMBL CB637288 [ ATTTACTCATGGTGGAAGTATGGGATCATGATACGTTTGGAAAGGATTACATAGGGAGATGC ATCTTGACA CTTACGAGAGTAATACTCGAAGGCGAGTTTCAGGATGAGTTTGTTTTGCAAGGTGCTAAATCCGGAAAGCTGAACTTGCACTTCAAGTGGACGCCGCAGCCAATTTATCGTGATCGTGATCGGGACCAGTGAAATCTGTGTAGATACATCACGTCAAGCAGCTGATAAATATTTCTTCGCCCTACGGTGCCTGTACATTAGTTTTTCATGTACAGTTAATTCACTTATCTTGTAGCAAC ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||