These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 719 fasta sequence [AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATCTT] [+] EMBL AK120182 [AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATA ] [+] EMBL CF298261 [ GGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTTAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGG ] [-] EMBL BU673491 [ CATGAGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGATGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCGGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTATCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCNAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTA ACTGCAgctattcc ] [+] EMBL CB657037 [ ATGGCCCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTGCACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATCTT] consensusID : consensus_9020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCTCAGAGAAATCATCAACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKATKGAGCTCCTCCGGGAGCCGCTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCTGCARGGYCTATGCAAGGAAGRAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATGTCATTACTCCAAAAGGGAGAGCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAACGGATYCAATYCTTTCTCATGTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATCACTGGMGCCGVAGTATGMAGGT] [+] EMBL AA754221 [CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCATGTGGGCGTCGATTAATCGGCCGCCGACCCGAATCGGGAGGAGGATCCGCAGAAGGAGCTTTCCTCAGAGAAATCATCAACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKATKGAGCTCCTCCGGGAGCCGCTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCTGCARGGYCTATGCAAGGAAGRAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATGTCATTACTCCAAAAGGGAGAGCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAACGGATYCAATYCTTTCTCATGTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATCACTGGMGCCGVAGTATGMAGGT] consensusID : consensus_9020#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [TCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA] [+] EMBL CF335629 [TCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9020#0 AGCCACGAAACGAAGCTGGAAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCA 60 consensus_9020#1 ------------------CGAGCAAGCAAGCAGGAAGGGGAGGAGAATCCAATCCAATCA 42 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 TGTGGGCGTCGATTAATCGGCCGCCGACCCCGAATCGGGAGGAGGATCCGCAGAAGGAGC 120 consensus_9020#1 TGTGGGCGTCGATTAATCGGCCGCCGACCC-GAATCGGGAGGAGGATCCGCAGAAGGAGC 101 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 TTTCCCTCAGAGAAATCATCAACGTCAAGTTGGTAGAGAGTGGGGAGAAGGAGAAGCTGA 180 consensus_9020#1 TTTCC-TCAGAGAAATCATCAACGKCAAGTTKGTAGAGAGTTGGGAGAAGGAGAAGCTKA 160 consensus_9020#2 ------------------------------------------------------TCTTTA 6 * * consensus_9020#0 TGGAGCTCCTCCGGGAGCGGCTCGTCGAGTGCGGCTGGAGGGACGAGATGAAAGCTCTCT 240 consensus_9020#1 TKGAGCTCCTCCGGGAGCCGCTYSTCGAGTGCGGCTKGAGGGACGAGATGAAAGCTCTCT 220 consensus_9020#2 CCCTGCTTAGATGTGAAC--CTTGAAAAATGTATTTTGA--------ATGGAAGCTTCCA 56 *** * ** * ** * ** * ** *** ***** * consensus_9020#0 GCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATG 300 consensus_9020#1 GCARGGYCTATGCAAGGAAGRAAGGAAGAAATAATGTTACAGKAGATGATCTTATTCATG 280 consensus_9020#2 GCTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---AAAAAAAA 113 ** * * ** ** ** ** *** ** * * * * * * * consensus_9020#0 TCATTACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTG-AAGGCAGAGCTCCTGCAA 359 consensus_9020#1 TCATTACTCCAAAAGGGAGAGCATCAGTGBCTKATTCTGTKTAAGGCAGAGCTTCTGCAA 340 consensus_9020#2 AAAAAACAAAAAAAAAAAAA---------------------------------------- 133 * ** **** * * consensus_9020#0 CGCATCCAATCCTTTCTCATGTCTTCTTCCTCACTTCGGTAGTCCATTTG--TCGTAATC 417 consensus_9020#1 CGGATYCAATYCTTTCTCATGTCTTCTKCCTCACTKCGGKAGKCCAHTKTGCKCGTAATC 400 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 ACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAGCTATGCAGGAAT 477 consensus_9020#1 ACTGGMGCCGVAG-TATGMAGGT------------------------------------- 422 consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 ACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGAC 537 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 AATGTTTCTCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCC 597 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 TGCTTAGATGTGAACCTTGAAAAATGTATTTTGAATGGAAGCTTCCAGCTTGTTATGCTG 657 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 CACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAATCATAAAAATTATATATC 717 consensus_9020#1 ------------------------------------------------------------ consensus_9020#2 ------------------------------------------------------------ consensus_9020#0 TT 719 consensus_9020#1 -- consensus_9020#2 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||