These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCACAGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTCATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTCCACGCGGTGGCCGCGGCGGCCTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGGGTCTTTAGAGCGCAGGGAGCCGCTCCGCCAGCCACAGCCCACAGGTACCTTCTGCGTGCTGCCTATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCTGCTTGCCATGGCAGCTGAAGCTAGCAGCATGGGAGAGCGAAGGAAACCAGCTGCACCGAAGCACTGAGCAAGATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGATTCGTTTTGGTTTGGAATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTACAGTTAGACTGGATTGGTTTGGGTTTTATCTCTGATGAATTGATTTGGAAGCACGCTGTGCGACGATATGGAGCGGGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCACCCTAGGCATGATATTTAAGCTGTTTCCTCAATTTTCCACTTTGATGCTAGAAGGTTTCTCCTTTACAACATTTCACTGTCTGTG] [+] EMBL CB651169 [GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCACAGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTCATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTCCACGCGGTGGCCGCGGCGGCCTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGGGTCTTTAGAGCGCAGGGAGCCGCTCCGCCAGCCACAGCCCACAGGTACCTTCTGCGTGCTGCCTATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCTGCTTGCCATGGCAGCTGAAGCTAGCAGCATGGGAGAGCGAAGGAAACCAGCTGCACCGAAGCACTGAGCAAGATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGATTCGTTTTGGTTTGGAATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTACAGTTAGACTGGATTGGTTTGGGTTTTATCTCTGATGAATTGATTTGGAAGCACGCTGTGCGACGATATGGAGCGGGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCACCCTAGGCATGATATTTAAGCTGTTTCCTCAATTTTCCACTTTGATGCTAGAAGGTTTCTCCTTTACAACATTTCACTGTCTGTG] consensusID : consensus_9025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence [CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAGATATCACCGATGGAAGAAAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTTCATGTTTATTGACTACCCTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGACATAAAACTCCAACTACAACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGGTAACTGGTTTCTATAATTTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTGCTTCATGAACACTTCGTCACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGTTGGTGATTGGAAATACTAACCAGCACAGAAATGAAGAACATGAATCTGATATATAAACAAGCAAACGATCAGGAGCTACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGGCATACATTTTGATATATTAGATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAAATATACTAAAATAAAATGGATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTCGCACTAGCAATCTTAGAGCGAAATAGATTAACATAAGATGGTGGGCATGCCTTTGCACTGCGAGAACTAACCAAATACATATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAGCCATCATGTGATTCTTCAGATACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTCCTATCTACTTAGACTTTAAACT] [+] EMBL CB651170 [CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAGATATCACCGATGGAAGAAAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTTCATGTTTATTGACTACCCTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGACATAAAACTCCAACTACAACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGGTAACTGGTTTCTATAATTTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTGCTTCATGAACACTTCGTCACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGTTGGTGATTGGAAATACTAACCAGCACAGAAATGAAGAACATGAATCTGATATATAAACAAGCAAACGATCAGGAGCTACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGGCATACATTTTGATATATTAGATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAAATATACTAAAATAAAATGGATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTCGCACTAGCAATCTTAGAGCGAAATAGATTAACATAAGATGGTGGGCATGCCTTTGCACTGCGAGAACTAACCAAATACATATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAGCCATCATGTGATTCTTCAGATACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTCCTATCTACTTAGACTTTAAACT] consensusID : consensus_9025#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 522 fasta sequence [CGTCGTCTACTCCGCTCCTTGT-CCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGACGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATG-TTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTATATTTTTTATGACATTTTCTTCCATCGGTGATATCTCTATTCTATTTTATTTGGTAATAATAATTTATGAACAACTGAATTCATCTAAAAAAAA] [+] EMBL OSC0731 [CGTCGTCTACTCCGCTCCTTGTGCCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGACGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAANTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATGTTTTACAGCATTTTTACA ] [+] EMBL AK120381 [ GTCGTCTACTCCGCTCCTTGT CCATCTCGCGGCGGAACAGGGGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATG TTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTAT ] [+] EMBL AU174350 [ GCGAGCAGAGCAGAGCAGGGGAGGAGATCCTGATTCATGTTCTTCATTTCTGTGCTGGTTAGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAGTGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATTATAGAAACCAGTTACCAAATG TTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAGTTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAGTCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTATATTTTTTATGACATTTTCTTCCATCGGTGATATCTCTATTCTATTTTATTTGGTAATAATAATTTATGAACAACTGAATTCATCTAAAAAAAA] consensusID : consensus_9025#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [GGGACTAACCTTGCGGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGTGAGGAGATCNCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTTA] [+] EMBL CB967001 [GGGACTAACCTTGCGGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTGAGGGGAGGGGCGGCGATCTCCATCCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGGTGAGGAGATCNCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9025#2 ------------------------------------------------------------ consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 GGGCGGCGATCTCCATCCGGCGAGCGGCGAGCGGCGAGCAGCGAGCAGAGCAGAGCAGGG 60 consensus_9025#1 -----------------CAGTTGTTCATAAATTATTATTACCAAATAAAATAGAATAGAG 43 consensus_9025#2 ------------------------------------------------------------ consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 GAGGAGATCCTGGGGTGCCAAATTGGATCGTAGCGTCGTCTCCGTCTCCGTCTTGTCCAC 120 consensus_9025#1 ATATCACCGATGGAAGAAAATGTCATAAAAAATATAAGCTTGATTTTCTTTTTTTACTTT 103 consensus_9025#2 ------------------------------------------------------------ consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 AGCTCCAGGCTCCACTCCTTGTGCTGCCACCCTCCCCTTTGCTTTGGACGTCGCCTCCTC 180 consensus_9025#1 CATGTTTATTGACTACCCTGTTGTGTAACTGTAAATTTTCAAATGTGAAAGCAGACTGAC 163 consensus_9025#2 ------------------------------------------------------------ consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 ATCAATGCACGCCGAGCGTCGCGTCTTCCTCCAGCTCATCTCAACGCCGGCGGCCGGTTC 240 consensus_9025#1 ATAAAACTCCAACTACAACAGTTGCTCAATTTGAACTGTACAAATGCTGTAAACATTTGG 223 consensus_9025#2 -----------CG-TCGTCTA---CTCCGCTCCTTGT-CCATCTCGCGGCGGAACAGGGG 44 consensus_9025#3 ------GGGACTA-ACCTTGC---GGTCGCTCCTTGCGCCATCTCGCGGTGGAACAGGTG 50 consensus_9025#0 CACGCGGTGGCCG-CGGCGGC---CTCTGCCCCTCCGCTCGTTCCTCTCCTTGGGTGGGG 296 consensus_9025#1 TAACTGGTTTCTATAATTTGCTCGGTTAAGTTCATGAAACATCAGATTCCTTAGCATCTG 283 * * * * consensus_9025#2 AGGGGAGGG------GCGGCGATCTCCATCCGGCG--AGCGGCGAGCGACGAGCAGCGAG 96 consensus_9025#3 AGGGGAGGG------GCGGCGATCTCCATCCGGCG--AGCGGCGAGC-------AGCGAG 95 consensus_9025#0 GTCTTTAGA------GCGCAGGGAGCCGCTCCGCC--AGCCACAGCCCACAGGTACCTTC 348 consensus_9025#1 CTTCATGAACACTTCGTCACTGGATTCATCCTCCTGTAACTCCATTCTTGAAGAAAGCGT 343 * * * * * * * * * consensus_9025#2 CAGAGCAGAGCAGGG-GAGGAGATCC-TGATTCATGTTCT-TCATTTCT-GTGCT-GGTT 151 consensus_9025#3 CAGAGCAGAGCAGGGTGAGGAGATCNCTGATTCATGTTCTCTCATTTCTTGTGCTTGGTT 155 consensus_9025#0 TGCGTGCTGCCTATCCGTGTCCATGTTGGTGTCGACTGCTGCGATCTCTGGTGAAGTGCT 408 consensus_9025#1 TGGTGATTGGAAATACTAACCAGCACAGAAATGAAGAACATGAAT--CTGATATATAAAC 401 * * ** ** * consensus_9025#2 AGTATTTCCAATCACCAACGCTTTCTTCAAGAATGGAGGAGGATGAATCCAGTGACGAAG 211 consensus_9025#3 A----------------------------------------------------------- 156 consensus_9025#0 GCTTGCCATGGCAGCTGAAGCTAGCAGCATGG--GAGAGCGAAGGAAACCAGCTGCACCG 466 consensus_9025#1 AAGCAAACGATCAGGAGCTACAAAAACACATGGAATACTCAAGTAACAAAGCTTGAATGG 461 consensus_9025#2 TGTTCATGAAGCAGATGCTAAGGAATCTGATGTTTCATGAACTTAACCGAGCAAATT-AT 270 consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 AAGCACTGAGCAAGATGGAAAATCCTCGTCGGCGGTATGGGTGGAGCAGTGTTTTTGGAT 526 consensus_9025#1 CATACATTTTGATATATTAGATTCTGTCAAAAAATTAATGGTGATACATTACACACTAAA 521 consensus_9025#2 AGAAACCAGTTACCAAATGTTTACAGCATTTGTACAGTTCAAATTGAGCAACTGTTGTAG 330 consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 TCGTTTTGGTTTGGAATGGGTTGAACCCATATTTCTGCCTTTGGTTTGGATTGATCCTAC 586 consensus_9025#1 ATATACTAAAATAAAATGGATTAGCATAGCATGAAGCACAGCTGCAGTGCATATGCACTC 581 consensus_9025#2 TTGGAGTTTTATGTCAGTCTGCTTTCACATTTGAAAATTTACAGTTACACAACAGGGTAG 390 consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 AGTTAGACTGGATTGGTTTGGGTTTTATCTCTGATGAATTG--ATTTGGAAGCACGCTGT 644 consensus_9025#1 GCACTAGCAATCTTAGAGCGAAATAGATTAACATAAGATGGT-GGGCATGCCTTTGCACT 640 consensus_9025#2 TCAATAAACATGAAAGTAAAAAAAGAAAATCAAGCTTATATTTTTTATGACATTTTCTTC 450 consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 GCGACGA-TATGGAGCGGGGCGGGTTCGGCCTGGATTCCAATCCATTGGCAGTTTGGCAC 703 consensus_9025#1 GCGAGAACTAACCAAATACATATCAAAAGAAACTTGAGCAATCAATCATTAAAGATCAAG 700 consensus_9025#2 CATCGGTGATATCTCTATTCTATTTTATTTGGTAATAATAATTTATGAACAACTGAATTC 510 consensus_9025#3 ------------------------------------------------------------ consensus_9025#0 CCTAGGCATGATATTTAAGCTGTTTCCTCAATT--TTCCACTTTGATGCTAGAAGGTTTC 761 consensus_9025#1 CCATCATGTGATTCTTCAGATACTGTGTGAATTAGATAAAATAGGCCCCAACCCTGTTTC 760 consensus_9025#2 ATCTAAAAAAAA-------------- 522 consensus_9025#3 -------------------------- consensus_9025#0 TCCTTTACAACATTTCACTGTCTGTG 787 consensus_9025#1 CTATCTACTTAGACTTTAAACT---- 782 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||