These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9028#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1997 fasta sequence [CTGACCCCCCCCCCNCCCCCCCAATNTCCATAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGT-GGTTCTCCAATATGGTGATGGATGANCCGAGCTTTTTTCACCAGTGGCAGTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCAGATCGCCGTCGCGTTCGGGCAGGCCGGCGAGGCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTTCAGCAGCAGCAGTACGCGGCGGCGGCGGCGGCGGANAACCGGCCGCGG-AAGGCGGCGAAGGTGAACACCAGCTGGGACTCGTGCATCACGGAGCAGGGCTCCCCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGCCGCCGCCGCCGCGGCGTTCGCCAGCGCGGGGCAGGCGCAGAGCGCCCCGTACTACGGCGGCGCCTCCGCCGCGGCCTTGAAGCCCAAGCAGGAGCTGGACGCCGCCGCCGCGCCCTTCTCCCAGGCGCGCCCGGTCAAGCGGAGCTACGACGCCATGGTCGCCGCCGACGTCGCCAAGGCCCCCGCCGCCGCCGCCTCCCGGCCTGCCTCCCAGAACCAGGAACACATCCTCGCCGAGCGGAAGCGCCGCGAGAAGCTCAGCCAGCGCTTCATCGCCCTCTCCAAGATCGTCCCTGGCCTCAAGAAAATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTGAAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAGGCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGCGACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTGTCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACCGCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTCACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCAGTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGCTTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTTTATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTTCTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAGCCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCAGATTACCTAAATATCCACCTACAAGTCTTCTATTTTCTCTCCCATCACATTTTTTTGCATGGATTGAGCTAGTCACTCCATGTTCTTGGGAGAGGGTAGAAACGTAAAAAAGAGACCTGTCTTTTTCTAGGGCCTGTTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCAATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAAATACCAACCTTTGCTGGCATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAAAGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTGCAAGCTCTTGATTCAGAAGTAGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTCATACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTAGTCTCCTTTGTGGGTTTTGTTGTAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATGTGCTTGTTGTTAAAAAAA] [+] EMBL AU101091 [CTGACCCCCCCCCCNCCCCCCCAATNTCCATAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATNTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGT GGTTCTCCAATATGGTGATGGATGANCCGAGCTTTTTTCACCANTGGCANTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCANATCGCCGTCGCGTTCGGGCAGGCCGGCGAGGCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTTCAGCAGCAGCAGTACGCGGCGGCGGCGGCGGCGGANAACCGGCCGCGGAAAGGCG ] [+] EMBL C93642 [CTGACCCCCCCCCCTNCCCCCCAATNTCCATAGGAGTNTNATTTGAGCTCTNAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGTGGGTTCTCCAATATGGTGATGGATGANCCGAGNTTTTTTCACCAGTGGCAGTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCAGATNGCCGTCGCGTTCGGGNAGGCCG ] [+] EMBL AK120539 [ ATAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGT GGTTCTCCAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAGTCGGATGGGCTGCTGGAGCAGTACACGGAGCAGCAGATCGCCGTCGCGTTCGGGCAGGCCGGCGAGGCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTGCAGCAGCAGCAGTACGCGGCGGCGGCGGCGGCGGAGCACCGGCCGCGG AAGGCGGCGAAGGTGAACACCAGCTGGGACTCGTGCATCACGGAGCAGGGCTCCCCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGCCGCCGCCGCCGCGGCGTTCGCCAGCGCGGGGCAGGCGCAGAGCGCCCCGTACTACGGCGGCGCCTCCGCCGCGGCCTTGAAGCCCAAGCAGGAGCTGGACGCCGCCGCCGCGCCCTTCTCCCAGGCGCGCCCGGTCAAGCGGAGCTACGACGCCATGGTCGCCGCCGACGTCGCCAAGGCCCCCGCCGCCGCCGCCTCCCGGCCTGCCTCCCAGAACCAGGAACACATCCTCGCCGAGCGGAAGCGCCGCGAGAAGCTCAGCCAGCGCTTCATCGCCCTCTCCAAGATCGTCCCTGGCCTCAAGAAAATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTGAAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAGGCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGCGACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTGTCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACCGCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTCACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCAGTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGCTTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTTTATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTTCTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAGCCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCAGATTACCTAAATATCCACCTACAAGTCTTCTATTTTCTCTCCCATCACATTTTTTTGCATGGATTGAGCTAGTCACTCCATGTTCTTGGGAGAGGGTAGAAACGTAAAAAAGAGACCTGTCTTTTTCTAGGGCCTGTTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCAATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAAATACCAACCTTTGCTGGCATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAAAGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTGCAAGCTCTTGATTCAGAAGTAGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTCATACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTAGTCTCCTTTGTGGGTTTTGTTGTAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATGT ] [+] EMBL BP184729 [ AGTACGTGAAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAGGCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGCGACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTGTCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACCGCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTCACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCAGTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGCTTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTTTATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTTCTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAGCCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCA ] [+] EMBL AU101092 [ TTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCAATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAAATACCAACCTTTGCTGGNATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAAAGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTGCAAGCTCTTGATTCAGAAGTNGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTNATACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTNGTCTCCTTTGTGGGTTTTGTTGTAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATGTGCTTGTTGTTAAAAAAA] consensusID : consensus_9028#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [CCTCTCCCACACATTCATCACAAGAACAACTCAATCTCACTCTCTTTTGAGCACAGAAACAAATGCAAATGCTGTTGGTTCTGACTGTTGTGTTGTGGGTGTTTGGTTTATGAGCAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGTGGTTCTCCAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAGGCCGGCGGCGGCGGCGGAGCACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGAACTCGTGCATCACGGAGCAGGGCTCCGCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGTCGTCGCCGCCGCAGCGTTCGCCATCGCGGATCAGGCGCAGACGGCCCCGTACTACGGTAGCGCCTCCGGCGCGGGCTTGAAGCCCCACCAAGAGTGGACAGCACCGGCGAGCCTTCTCCCAGGTGGGTCCGGATAAGGGAACTACGACGTCCTGTCGAGACCTTAATGGGCAATGACCCCGGCTGGA] [+] EMBL CA755742 [CCTCTCCCACACATTCATCACAAGAACAACTCAATCTCACTCTCTTTTGAGCACAGAAACAAATGCAAATGCTGTTGGTTCTGACTGTTGTGTTGTGGGTGTTTGGTTTATGAGCAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGCAGTGGTTCTCCAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAGGCCGGCGGCGGCGGCGGAGCACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGAACTCGTGCATCACGGAGCAGGGCTCCGCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGCCACGCCGACGTCGTCGCCGCCGCAGCGTTCGCCATCGCGGATCAGGCGCAGACGGCCCCGTACTACGGTAGCGCCTCCGGCGCGGGCTTGAAGCCCCACCAAGAGTGGACAGCACCGGCGAGCCTTCTCCCAGGTGGGTCCGGATAAGGGAACTACGACGTCCTGTCGAGACCTTAATGGGCAATGACCCCGGCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9028#0 CTGACCCCCCCCCCNCCCCCCCAATNTCCATAGGAGTGTGATTTGAGCTCTCAAGACCCC 60 consensus_9028#1 ----------CCTCTCCCACACATTCATCACAAGAAC--------AACTC---AATCTCA 39 ** * *** * ** * ** * ** * *** * * * consensus_9028#0 CCATCTTTGGTTTCGAGGAATTAATCGTCGAGGGAAGAAGGGAAGTAGAAATGGCGACGC 120 consensus_9028#1 CTCTCTTTTGAGCACAGAAACAAAT--GCAAATGCTGTTGGTTC-TGACTGTTGTGTTGT 96 * ***** * ** ** *** * * * * ** * * * * * consensus_9028#0 AG-TGGTTCTCCAATATGGTGATGGATGANCCGAGCTTTTTTCACCAGTGGCAGTCGGAT 179 consensus_9028#1 GGGTGTTTGGTTTATGAGCAGGAGTGTGATTTGAGCTCTCAAGACCCCCCATCTTTGGTT 156 * ** ** ** * * * *** ***** * *** * ** * consensus_9028#0 GGGCTGCTGGAGCAGTACACGGAGCAGCAGATCGCCGTCGCGTTCGGGCAGGCCGGCGAG 239 consensus_9028#1 ---TCGAGGAATTAAT-CGTCGAGGGAAGAAGGGAAGTAGAAAT--GGCGACGCAGTGGT 210 * * * * * * *** * * ** * * *** * * * consensus_9028#0 GCGGACGCGGCGGCGGCGGCGGCGGCGATGATGGTTCAGCAGCAGCAGTACGCGGCGGCG 299 consensus_9028#1 TCTC-CAATATGGTGATGGATGAGCCGAGCTTTTTTCACCAGTGGCAG-----GCCGGCG 264 * * ** * ** * * *** * **** *** **** * ***** consensus_9028#0 GCGGCGGCGGANAACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGGACTCGTGC 359 consensus_9028#1 GCGGCGGCGGAGCACCGGCCGCGGAAGGCGGCGAAGGTGAACACCAGCTGGAACTCGTGC 324 *********** ************************************** ******** consensus_9028#0 ATCACGGAGCAGGGCTCCCCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGC 419 consensus_9028#1 ATCACGGAGCAGGGCTCCGCGGCGGACTCCTCCTCGCCGACCATCCTCTCCTTCGGCGGC 384 ****************** ***************************************** consensus_9028#0 CACGCCGACGCCGCCGCCGCCGCGGCGTTCGCCAGCGCGGGGCAGGCGCAGAGCGCCCCG 479 consensus_9028#1 CACGCCGACGTCGTCGCCGCCGCAGCGTTCGCCATCGCGGATCAGGCGCAGACGGCCCCG 444 ********** ** ********* ********** ***** ********** ****** consensus_9028#0 TACTACGGCGGCGCCTCCGCCGCGGCCTTGAAGCCCAAGCAGGAGCTGGACGCCGCCGCC 539 consensus_9028#1 TACTACGGTAGCGCCTCCGGCGCGGGCTTGAAGCCCCACCAAGAG-TGGACAGCACCGGC 503 ******** ********* ***** ********** * ** *** ***** * *** * consensus_9028#0 GCGCCCTTCTCCCAGGCGCGCCCGGTCAAGCGGAGCTACGACGCCATGGTCGCCGCCGAC 599 consensus_9028#1 GAGCC-TTCTCCCAGGTGGGTCCGGATAAG-GGAACTACGACGTCCTG-TCGAGACCTTA 560 * *** ********** * * **** *** *** ******** * ** *** ** consensus_9028#0 GTCGCCAAGGCCCCCGCCGCCGCCGCCTCCCGGCCTGCCTCCCAGAACCAGGAACACATC 659 consensus_9028#1 ATGGGCAATGACCCCGGCTGGA-------------------------------------- 582 * * *** * ***** * consensus_9028#0 CTCGCCGAGCGGAAGCGCCGCGAGAAGCTCAGCCAGCGCTTCATCGCCCTCTCCAAGATC 719 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 GTCCCTGGCCTCAAGAAAATGGACAAGGCGTCGGTGCTGGGCGACGCGATCAAGTACGTG 779 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 AAGCAGCTGCAGGACCAGGTGAAGGGGCTGGAGGAGGAGGCGCGGCGGCGGCCGGTGGAG 839 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 GCGGCGGTGCTGGTGAAGAAGTCCCAGCTGTCCGCCGACGACGACGACGGCTCGTCCTGC 899 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 GACGAGAACTTCGACGGCGGCGAGGCCACCGCCGGGCTGCCGGAGATCGAGGCCCGCGTG 959 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TCGGAGCGCACCGTGCTGGTCAAGATCCACTGCGAGAACCGCAAGGGCGCCCTCATCACC 1019 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 GCCCTCTCCGAGGTCGAGACCATCGGCCTCACCATCATGAACACCAATGTGCTCCCCTTC 1079 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 ACCTCCTCCTCCCTCGACATCACCATCATGGCCACCGCTGGAGAGAACTTCTCATTATCA 1139 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 GTCAAAGATATCGTCAAGAAGCTAAATCAAGCATTCAAGTTATCCCTGTGAAGGACTTGC 1199 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TTTCCTGATCAAGTCTAATCTAGATCAAATCTTTGGTTTTTAATCTTCCTACTACATTTT 1259 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TATCATTAGCCTTGAGAGAAATCTGAGGCTGATGGTTCTAATTAGGTCCTTTCCCTGCTT 1319 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 CTGCTTCTGAAGAGAGTTTGCTTGCAATCCACCACAGAGCACACCCCCTCAAGGATTTAG 1379 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 CCATTAACCACCTGTTTTTGCTGCATGGGTGCAGAGAATTTGCAGATTACCTAAATATCC 1439 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 ACCTACAAGTCTTCTATTTTCTCTCCCATCACATTTTTTTGCATGGATTGAGCTAGTCAC 1499 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TCCATGTTCTTGGGAGAGGGTAGAAACGTAAAAAAGAGACCTGTCTTTTTCTAGGGCCTG 1559 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TTTATCAAGGGGAGTTTGACTTTATCAAAAAAACCTTATTTTCATTTCTCCCCTTCTGCA 1619 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 ATGTTGCCCTTTGATTTCACCCTGTTTTTCTATGAGAGGATTGAGGTTTTTCAAACCCAA 1679 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 ATACCAACCTTTGCTGGCATCTCATACACTATCCTATCACACACTGTTCCCAAACCCAAA 1739 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 AGGCTTCAAATTGTGGAGAAAATGGTGCCTTCCTTTTTTCAGCTCTGAGGTGGACTTTTG 1799 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 CAAGCTCTTGATTCAGAAGTAGTGTAGGGTGTGTGTCTCTCTTCTCTTTTTTAGGGTCAT 1859 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 ACAAGCTGGCCCCAGCTTGATTGCACCCTTTGCTTGTAGTCTCCTTTGTGGGTTTTGTTG 1919 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TAACAGGATCAAGATGTAGCTGTTCCCTCTTGTTTACACAAGTATAAAAATAAATAAATG 1979 consensus_9028#1 ------------------------------------------------------------ consensus_9028#0 TGCTTGTTGTTAAAAAAA 1997 consensus_9028#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||