|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1631 fasta sequence
[CCAGATCTGCGGCCATGGACGACGACGGCGGCGCGTCCCCGTCGTCCTCGCTCTCCCCGTCCCGCTCCCCGTCCCCACTCCCCGTTGCCGACCCCGTCACCGTCGCCGCGGCGCCCCCGGGCCACCTCGCCCTCGCCATCCCCATCCCCAAGCCCGGCTCCTCCTCTGGAGGTGGGGGAGGGGGAGGGGGAAGGGAGGACGCCTGGAGCGACGGCGCCACCTCCACGCTGATCGACGCCTGGGGGGAGCGGTTCGTCGCGCTGGGGCGCGGCAGCCTCCGCCACCCGCAGTGGCAGGAGGTCGCCGAGGTCGTCTCCTCCCGCGACGGCTACTCCAAGCAGCCCAAGTCCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACTCCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTC-GCCCCC-GTGCACAAGCCCGCGGGC-GC-CTACCCCGCCGCCGCC-CAGCCGGGGC-C-GCAGGGCGCGGGCAA--TTCCGGCTCCAACTCCGCC-GCCGCCGCTACC-GCCGCCCGGAGCACCGCGCCCATGGCAGCCGCGCGTCAACTTCCCGCAGCGCACGCGCACGC-AGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCGCCTCCCCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCCACCTATGGCGGCCGCGAATGGCAAGAGGCGGCGCGAGGTGGAGGAGGAGGTGAACGGTGCGGACAGCGGCCACCGCACGCAGGGCCTGCGCGAGCTGGCGCAGGCGATCCGCCGGTTCGGCGAGGTGTATGAGCGCGTGGAGTTGGCGAAGCGGGAGCAGGAGCTCCGGATGGAGCGCGACCGCCTAGAGGCCGCCCGCGAGCTGGAGGACCAGCGCGTCCAGTTCTTTCTCAAGATGCAGATGGAGCTCTCCAAGGCCAACAATGCTGGCGCCTCTGCTGCCGCTGCCGCAGTGGGTGCCGTTGCCACCGCCATTGCTGCTGCCGATGGCAATGGCACGAGGAGAACCGCTATGGCCACTGATGTCGGTACCAGCAGCAATCACCATGTTCGGTACCGCTTCCAGGACAGCAGGCACTGCCATGCTGCCCCGCAGCAGCCACAACACCAGTACAACGAGAACAATGCCGCCGAAGCCGCCAGAGGTACCGGGAATGGTAGCGATACCGACAACAAAGAAGACGAGGATGAGGCAGAGGACGAG----GAGGACGAGAGCCAGTAATGGCACCCGGTTTACATCTTGAAAGATTCAAGAAT-TCGATTTGTATGATTGTATCAGTTAATTGGCATTG-CCCTGGTGGTTAGAATTACCTCCCATTTAGGCTGTTCTGGGAGCAACAAATGACATCTGAGTACTAGTTAGCGTCGGTATTAGCAACAAGGGGTAGCATAGTTATATGGTTATGTGCCTGTGCCTGTGGGTGTTGTGTAACTTGTAGCTGCTTGTTCATGCTTGTGATGCTGTGGTCTGAGCTATGATGCAACTGCCATGTCCTGGCGAATACTGCATCGATTGTAACCTGATTGTTATGTGACAAAATGTTAGCCTTATTCTGTGTCAAAAAAAAAAAAAAAAAA]
[+] EMBL AK120665 [CCAGATCTGCGGCCATGGACGACGACGGCGGCGCGTCCCCGTCGTCCTCGCTCTCCCCGTCCCGCTCCCCGTCCCCACTCCCCGTTGCCGACCCCGTCACCGTCGCCGCGGCGCCCCCGGGCCACCTCGCCCTCGCCATCCCCATCCCCAAGCCCGGCTCCTCCTCTGGAGGTGGGGGAGGGGGAGGGGGAAGGGAGGACGCCTGGAGCGACGGCGCCACCTCCACGCTGATCGACGCCTGGGGGGAGCGGTTCGTCGCGCTGGGGCGCGGCAGCCTCCGCCACCCGCAGTGGCAGGAGGTCGCCGAGGTCGTCTCCTCCCGCGACGGCTACTCCAAGCAGCCCAAGTCCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACTCCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTC GCCCCC GTGCACAAGCCCGCGGGC GC CTACCCCGCCGCCGCCGCCGCCGGGGC C GC GGGCGCGGGCAA TTCCGGCTCCAACTCCGCC GCCGCCGCTACC GCCGCCCGGAGCACCGCGCCCATGGC GCCGCGCGTCAACTTCCCGCAGCGCACGCGCACGC AGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCGCCTCACCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCCACCTATGGCGGCCGCGAATGGCAAGAGGCGGCGCGAGGTGGAGGAGGAGGTGAACGGTGCGGACAGCGGCCACCGCACGCAGGGCCTGCGCGAGCTGGCGCAGGCGATCCGCCGGTTCGGCGAGGTGTATGAGCGCGTGGAGTTGGCGAAGCGGGAGCAGGAGCTCCGGATGGAGCGCGACCGCCTAGAGGCCGCCCGCGAGCTGGAGGACCAGCGCGTCCAGTTCTTTCTCAAGATGCAGATGGAGCTCTCCAAGGCCAACAATGCTGGCGCCTCTGCTGCCGCTGCCGCAGTGGGTGCCGTTGCCACCGCCATTGCTGCTGCCGATGGCAATGGCACGAGGAGAACCGCTATGGCCACTGATGTCGGTACCAGCAGCAATCACCATGTTCGGTACCGCTTCCAGGACAGCAGGCACTGCCATGCTGCCCCGCAGCAGCCACAACACCAGTACAACGAGAACAATGCCGCCGAAGCCGCCAGAGGTACCGGGAATGGTAGCGATACCGACAACAAAGAAGACGAGGATGAGGCAGAGGACGAG GAGGACGAGAGCCAGTAATGGCACCCGGTTTACATCTTGAAAGATTCAAGAAT TCGATTTGTATGATTGTATCAGTTAATTGGCATTG CCCTGGTGGTTAGAATTACCTCCCATTTAGGCTGTTCTGGGAGCAACAAATGACATCTGAGTACTAGTTAGCGTCGGTATTAGCAACAAGGGGTAGCATAGTTATATGGTTATGTGCCTGTGCCTGTGGGTGTTGTGTAACTTGTAGCTGCTTGTTCATGCTTGTGATGCTGTGGTCTGAGCTATGATGCAACTGCCATGTCCTGGCGAATACTGCATCGATTGTAACCTGATTGTTATGTGACAAAATGTTAGCCTTATTCTGTGT ]
[+] EMBL BI799007 [ CATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACTCCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTC GCCCCCAGTGCACAAGCCCGCGGGCAGCACTACCCCGCCGCCAGC CAGCCGGGGCACAGCAGGGCGCGGGCAA TTCCGGCTCCAACTCCGCCAGCCGCCGCTACCAGCCGCCCGGAGCACCGCGCCCATGGCAGCCGCGCGTCAACTTCCCGCAGCGCACGCGCACGCAAGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCGCCTCCCCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGC ]
[+] EMBL BI798082 [ CATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACTCCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTCAGCCCCC GTGCACAAGCCCGCGGGC GC CTACCCCGCCGCCG C CAGCCGGGGC C GCAGGGCGCGGGCAACCTCCCGCCCCCAACTCCGCC GCCGCCGCTACC GCCGCCCGGAGCACCGCGCCCATGGCAGCCGCGCGTCAACTTCCCGCAGCGCACGCGCACGC AGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATCCCGTCGCCTCCCCAGGTATCACCTCCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCC ]
[-] EMBL CA761374 [ AGAGGACGAGACAAGGGGACGAGAGCCAGTAATGGCACCCGGTTTACATCTTGAAAGATTCAAGAAT TCGATTTGTATGATTGTATCAGTTAATTGGCATTG CCCTGGTGGTTAGAATTACCTCCCATTTAGGCTGTTCTGGGAGCAACAAATGACATTTGAGTACTAGTTAGGGTCGGTATTAGCAACAAGGGGTAGCATAGTTATATGGTTATGTGCCTGTGCCTGTGGGTGTTGTGTAACTTGTAGCTGCTTGTTCATGCTTGTGATGCTGTGGTTTGAGCTATGATGCAACTGCCATGTCCTGGCGAATACTGCATCGATTGTAACCTGATTGTTATGTGACAAAATGTTAGCCTTATTTTGTGTCAAAAAAAAAAAAAAAA ]
[+] EMBL C97055 [ AATGGCACCCGGTTTACATCTTGAAAGATTCAAGAATNCCGANTTGTATGATTGTATCAGTTAATTGGCATTGCCCCTGGTGGTTAGAATTACCTCCCATTTAGGCTGTTCTGGGAGCAACAAATGACATCTGAGTACTAGTTAGCGTCGGTATTAGCAACAAGGGGTAGCATAGTTATATGGTTATGTGCCTGTGCCTGTGGGTGTTGTGTAACTTGTAGCTGCTTGTTCATGCTTGTGATGCTGTGGTCTGAGCTATGATGCAACTGCCATGTCCTGGCGAATACTGCATCGATTGTAACCTGATTGTTATGTGACAAAATGTTAGCCTTA AAAAAAAAAAAAAAAAAA]
consensusID : consensus_9037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence
[GCTGGGGCGCGGCAGCCTCCGCCACCCGCAGTGGCAGGAGGTCGCCGAGGTCGTCTCCTCCCGCGACGGCTACTCCAAGCAGCCCAAGTCCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACTCCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTCGCCCCCGTGCACAAGCCCGCGGGCGCCTACCCCGCCGCCGCCGCCGGGGCCGCGGGCGCGGGCAATTCCGGCTCCAACTCCGCCGCCGCCGCTACCGCCGCCCGGAGCACCGCGCCCATGGCGCCGCGCGTCAACTTCCCGCAGCGCACGCGCACGCAGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCGCCTCCCCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCCACCTATGGCGGCCGCGAATGGCAAGAGACGGCGCGAGGTGGAGGAGGAGGTGAACGGTGCGGACAGCGGCCACCGCACGCAGGGCCTGCGCGAGCTGGCGCAGGCGATCCGCCGGTTCGGCGAGGTGTATGAGCGCGTGGAGTTGGCGAAGCGGGAGCAGGAGCTCCGGATGGAGCGCGACCGCCTAGAGGCCGCCCGCGAGCTGGAGGACCAGCGCGTCCAGTCCTTTCTCAAGATGCAAAGGAGCTCTCCAAGCCAACAATGCTGGCGCCTTTGCTGCCGCTGCCGAATGGGTGCCCTTGCCCCGCCATTGCTGTGCCGTTGGCATGGCCAAGGAGACCCGTTTGGCCACTGTGGCGGTCCAGGGCAATCACATGTTGGACCGTTAAGGAAATAGGATTGCTTGTGCCCGAGATGCCAACCTTTCACTGAAATGCCGCGACCCCCAAGGTCCGGATGGTGGTTCCCCACAAAACCTGTTAGGCAGCACAGGGCAACCGTTTGCCCTTTCTTTAAGT]
[+] EMBL BE039872 [GCTGGGGCGCGGCAGCCTCCGCCACCCGCAGTGGCAGGAGGTCGCCGAGGTCGTCTCCTCCCGCGACGGCTACTCCAAGCAGCCCAAGTCCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACTCCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTCGCCCCCGTGCACAAGCCCGCGGGCGCCTACCCCGCCGCCGCCGCCGGGGCCGCGGGCGCGGGCAATTCCGGCTCCAACTCCGCCGCCGCCGCTACCGCCGCCCGGAGCACCGCGCCCATGGCGCCGCGCGTCAACTTCCCGCAGCGCACGCGCACGCAGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCGCCTCCCCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCCACCTATGGCGGCCGCGAATGGCAAGAGACGGCGCGAGGTGGAGGAGGAGGTGAACGGTGCGGACAGCGGCCACCGCACGCAGGGCCTGCGCGAGCTGGCGCAGGCGATCCGCCGGTTCGGCGAGGTGTATGAGCGCGTGGAGTTGGCGAAGCGGGAGCAGGAGCTCCGGATGGAGCGCGACCGCCTAGAGGCCGCCCGCGAGCTGGAGGACCAGCGCGTCCAGTCCTTTCTCAAGATGCAAAGGAGCTCTCCAAGCCAACAATGCTGGCGCCTTTGCTGCCGCTGCCGAATGGGTGCCCTTGCCCCGCCATTGCTGTGCCGTTGGCATGGCCAAGGAGACCCGTTTGGCCACTGTGGCGGTCCAGGGCAATCACATGTTGGACCGTTAAGGAAATAGGATTGCTTGTGCCCGAGATGCCAACCTTTCACTGAAATGCCGCGACCCCCAAGGTCCGGATGGTGGTTCCCCACAAAACCTGTTAGGCAGCACAGGGCAACCGTTTGCCCTTTCTTTAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9037#0 CCAGATCTGCGGCCATGGACGACGACGGCGGCGCGTCCCCGTCGTCCTCGCTCTCCCCGT 60
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 CCCGCTCCCCGTCCCCACTCCCCGTTGCCGACCCCGTCACCGTCGCCGCGGCGCCCCCGG 120
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 GCCACCTCGCCCTCGCCATCCCCATCCCCAAGCCCGGCTCCTCCTCTGGAGGTGGGGGAG 180
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 GGGGAGGGGGAAGGGAGGACGCCTGGAGCGACGGCGCCACCTCCACGCTGATCGACGCCT 240
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 GGGGGGAGCGGTTCGTCGCGCTGGGGCGCGGCAGCCTCCGCCACCCGCAGTGGCAGGAGG 300
consensus_9037#1 -------------------GCTGGGGCGCGGCAGCCTCCGCCACCCGCAGTGGCAGGAGG 41
*****************************************
consensus_9037#0 TCGCCGAGGTCGTCTCCTCCCGCGACGGCTACTCCAAGCAGCCCAAGTCCGACGTCCAGT 360
consensus_9037#1 TCGCCGAGGTCGTCTCCTCCCGCGACGGCTACTCCAAGCAGCCCAAGTCCGACGTCCAGT 101
************************************************************
consensus_9037#0 GCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACT 420
consensus_9037#1 GCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGGTCGAGAAGGCCAAGCCGGACT 161
************************************************************
consensus_9037#0 CCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTCGCCCCCGTGCACAAGCCCGCGG 480
consensus_9037#1 CCTCCTGGCCCTACTTCCACCGCCTCGACACCCTCCTCGCCCCCGTGCACAAGCCCGCGG 221
************************************************************
consensus_9037#0 GCGCCTACCCCGCCGCCGCCCAGCCGGGGCCGCAGGGCGCGGGCAATTCCGGCTCCAACT 540
consensus_9037#1 GCGCCTACCCCGCCGCCGCC--GCCGGGGCCGC-GGGCGCGGGCAATTCCGGCTCCAACT 278
******************** *********** **************************
consensus_9037#0 CCGCCGCCGCCGCTACCGCCGCCCGGAGCACCGCGCCCATGGCAGCCGCGCGTCAACTTC 600
consensus_9037#1 CCGCCGCCGCCGCTACCGCCGCCCGGAGCACCGCGCCCATGGC-GCCGCGCGTCAACTTC 337
******************************************* ****************
consensus_9037#0 CCGCAGCGCACGCGCACGCAGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCG 660
consensus_9037#1 CCGCAGCGCACGCGCACGCAGTTCCTCCCCTCTTCCGGGGTGAAGCGGAGGATGCCGTCG 397
************************************************************
consensus_9037#0 CCTCCCCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCCACCTATG 720
consensus_9037#1 CCTCCCCAGGTATCAGCGTCGTCGGAGTCGTCCGACGGGTTCCCGCCGGAGCCACCTATG 457
************************************************************
consensus_9037#0 GCGGCCGCGAATGGCAAGAGGCGGCGCGAGGTGGAGGAGGAGGTGAACGGTGCGGACAGC 780
consensus_9037#1 GCGGCCGCGAATGGCAAGAGACGGCGCGAGGTGGAGGAGGAGGTGAACGGTGCGGACAGC 517
******************** ***************************************
consensus_9037#0 GGCCACCGCACGCAGGGCCTGCGCGAGCTGGCGCAGGCGATCCGCCGGTTCGGCGAGGTG 840
consensus_9037#1 GGCCACCGCACGCAGGGCCTGCGCGAGCTGGCGCAGGCGATCCGCCGGTTCGGCGAGGTG 577
************************************************************
consensus_9037#0 TATGAGCGCGTGGAGTTGGCGAAGCGGGAGCAGGAGCTCCGGATGGAGCGCGACCGCCTA 900
consensus_9037#1 TATGAGCGCGTGGAGTTGGCGAAGCGGGAGCAGGAGCTCCGGATGGAGCGCGACCGCCTA 637
************************************************************
consensus_9037#0 GAGGCCGCCCGCGAGCTGGAGGACCAGCGCGTCCAGTTCTTTCTCAAGATGCAGATGGAG 960
consensus_9037#1 GAGGCCGCCCGCGAGCTGGAGGACCAGCGCGTCCAGTCCTTTCTCAAGATGCAAA-GGAG 696
************************************* *************** * ****
consensus_9037#0 CTCTCCAAGGCCAACAATGCTGGCGCCTCTGCTGCCGCTGCCGCAGTGGGTGCCGTTGCC 1020
consensus_9037#1 CTCTCCAAG-CCAACAATGCTGGCGCCTTTGCTGCCGCTGCCG-AATGGGTGCCCTTGCC 754
********* ****************** ************** * ******** *****
consensus_9037#0 ACCGCCATTGCTGCTGCCGATGGCAATGGCACGAGGAGAACCGCTATGGCCACTGATGTC 1080
consensus_9037#1 -CCGCCATTGCTG-TGCCGTTGGCA-TGGC-CAAGGAGACCCGTT-TGGCCACTG-TGGC 808
************ ***** ***** **** * ****** *** * ********* ** *
consensus_9037#0 GGTACCAGCAGCAATCACCATGTTCGGTACCGCTTCCAGGACAGCAGGCACTGCCATGCT 1140
consensus_9037#1 GGT-CCAG-GGCAATCAC-ATGTTGG--ACCGTT---AAGGAAATAGG-ATTGCT----T 855
*** **** ******** ***** * **** * * * * *** * *** *
consensus_9037#0 GCCCCGCAGCAGCCACAACACCAGTACAACGAGAACAATGCCGCCGAAGCCGCCAGAGGT 1200
consensus_9037#1 GTGCCCGAGATGCCA----ACCTTT-CACTGA----AATGCCGC----GACCCCCAAGGT 902
* ** ** **** *** * ** ** ******** * * ** ****
consensus_9037#0 ACCGGGAATGGTAGCGATACCGACAACAAAGAAGACGAGGATGAGGCAGAGGACGAGGAG 1260
consensus_9037#1 CC---GGATGGTGGTTCCCCACAAAACCTGTTAGGC-AGCACAGGGCAACCGTTTGCCCT 958
* * ***** * * * *** ** * ** * **** *
consensus_9037#0 GACGAGAGCCAGTAATGGCACCCGGTTTACATCTTGAAAGATTCAAGAATTCGATTTGTA 1320
consensus_9037#1 TTCTTTAAGT-------------------------------------------------- 968
* *
consensus_9037#0 TGATTGTATCAGTTAATTGGCATTGCCCTGGTGGTTAGAATTACCTCCCATTTAGGCTGT 1380
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 TCTGGGAGCAACAAATGACATCTGAGTACTAGTTAGCGTCGGTATTAGCAACAAGGGGTA 1440
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 GCATAGTTATATGGTTATGTGCCTGTGCCTGTGGGTGTTGTGTAACTTGTAGCTGCTTGT 1500
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 TCATGCTTGTGATGCTGTGGTCTGAGCTATGATGCAACTGCCATGTCCTGGCGAATACTG 1560
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 CATCGATTGTAACCTGATTGTTATGTGACAAAATGTTAGCCTTATTCTGTGTCAAAAAAA 1620
consensus_9037#1 ------------------------------------------------------------
consensus_9037#0 AAAAAAAAAAA 1631
consensus_9037#1 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||