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Oryza sativa
cluster # 9045 cluster # 9045       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9045#0 length = 1952 sequences # 1  
consensus_9045#1 length = 1677 sequences # 4  
consensus_9045#2 length = 392 sequences # 1  

consensusID : consensus_9045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1952
fasta sequence
                              [CACGGCCGCGGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGCGCAGTGCCGCCCCTACGTCACGCGCGGGGACTGCGTCGCGTGCTTCGACGCCGCGGCCACGCTCCTCCGCGCCGCCTGCGGCGCTGCCAACGGCGGGCGCGCCATTCTCGACGGCTGCGTCGTGAGGTACGAGAGCGCGGCCTTCTTCGACCAGGCCACGCTCCCCGGGAACACGCAGGTGTGCAACGGCTCCGCTGTCGCCGGCGGCGGGTTCGCGGACGCGGCGCGGGGGCTGGTCGGTGACCTCGTGGCTGCCGTGCCTCGCGCCCTGGGGCTCGCCGCGGCGGCCGCGGGCGCCGGCGTGTACGCCGCGGCGCAGTGTGTGGTGACGGTCGGGGAGGGTGGCTGCGCGCAGTGCCTGGAGGTGGCCGTGAGGAACATCGACGGGTGCCCGCCCAATTCCGACGGCCGCGCCGTCGACGCCGGCTGCTTCATGAGGGAAATCAGATCGGAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGTGGCCTTCCTGTTCCTTCTTGGTCTATTAGCTTTCTTGTGGACCTGGCGGTCTAGGAAGCTGTTGAAGCCTCGTAGAGGAGATATACTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTTTTACTATCAAGATCTGAAGGTTGCAACCAATAATTTCTGTGAGGAAAGCAAACTTGGAGAAGGGGGTTTTGGAGATGTATTTAAGGGTTTGCTGAAAAATGGAAAAACTGTAGCTGTAAAACGGTTGACAGTGATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCAATGTTCATCATCGGAATCTTGTCAGGCTTCTTGGTTGCTCTAGCAAGGGCTCGGAATGCCTGCTTGTTTATGAATACATGGCAAATGGAAGCCTCGACAAGTTCCTCTTCGGTGATAAACGTGGTACGCTTAATTGGAAGCAACGATTTAACATCATCGTTAGCATGGCTCGTGGCCTTGGATATCTTCATCAAGAATTTCATGTCTGCATCATACACCGTGACATTAAATCTAGCAATGTTCTTCTTGATGATGAGTTTCAGCCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCCTACCTGATGATCATAGTCATCTCAGCACTAAATTTGCAGGAACATTGGGTTACACAGCTCCTGAATATGCCATCCATGGGCAACTCTCTGAGAAGGTTGACACATACAGCTTTGGTGTTGTCGTTTTGGAAATAATAAGTGGCAGGAAGCTCAATGATGCAAGGCTGGATCCTGATAGCCAGTACCTACTTGAATGGGCCTGGAAGCTTTATGAAAACAACAACTTGATTGAATTGGTGGATAAATCATTAGACCCAAAAGAATATAATCCTGAAGAGGTGAAAAAAATAATACAGATAGCCCTTCTCTGCACTCAATCAGCTGTTGCTTCACGTCCAACGATGTCAGAGGTAGTTGTGTTGTTGCTGACCAAAAATTCTTCAGAGTTCCAGCCCACTAGGCCTACTTTTATTGATGCAATAAGTAGAGTACGAGGTGAAACATCCTCCTCCAGTTCATCTTCTGCATCCAAGGCCACTATTTCGATAACACAGTATTCAGCCAGGTAAAAAAAAGTTGTATATGATGTGCTTCTCTTTTTTTTTGTAACTTCTATATTTGTATCTGTATCTTTGTTTTATGCAGCAACAAGTGGATGTTTACTTGTGAGCATAAACAAAAACAGTGTAAATCATCTGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGTAACTATGAGTCCCATAGCATTTGTCCTTGTAACTGTTCTCAGACAAATCACTGCACTCCTTGTATGCTCGGATCATATTTGAGTGAAAATTTGAAA]

[+] EMBL AK120835             [CACGGCCGCGGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGCGCAGTGCCGCCCCTACGTCACGCGCGGGGACTGCGTCGCGTGCTTCGACGCCGCGGCCACGCTCCTCCGCGCCGCCTGCGGCGCTGCCAACGGCGGGCGCGCCATTCTCGACGGCTGCGTCGTGAGGTACGAGAGCGCGGCCTTCTTCGACCAGGCCACGCTCCCCGGGAACACGCAGGTGTGCAACGGCTCCGCTGTCGCCGGCGGCGGGTTCGCGGACGCGGCGCGGGGGCTGGTCGGTGACCTCGTGGCTGCCGTGCCTCGCGCCCTGGGGCTCGCCGCGGCGGCCGCGGGCGCCGGCGTGTACGCCGCGGCGCAGTGTGTGGTGACGGTCGGGGAGGGTGGCTGCGCGCAGTGCCTGGAGGTGGCCGTGAGGAACATCGACGGGTGCCCGCCCAATTCCGACGGCCGCGCCGTCGACGCCGGCTGCTTCATGAGGGAAATCAGATCGGAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGTGGCCTTCCTGTTCCTTCTTGGTCTATTAGCTTTCTTGTGGACCTGGCGGTCTAGGAAGCTGTTGAAGCCTCGTAGAGGAGATATACTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTTTTACTATCAAGATCTGAAGGTTGCAACCAATAATTTCTGTGAGGAAAGCAAACTTGGAGAAGGGGGTTTTGGAGATGTATTTAAGGGTTTGCTGAAAAATGGAAAAACTGTAGCTGTAAAACGGTTGACAGTGATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCAATGTTCATCATCGGAATCTTGTCAGGCTTCTTGGTTGCTCTAGCAAGGGCTCGGAATGCCTGCTTGTTTATGAATACATGGCAAATGGAAGCCTCGACAAGTTCCTCTTCGGTGATAAACGTGGTACGCTTAATTGGAAGCAACGATTTAACATCATCGTTAGCATGGCTCGTGGCCTTGGATATCTTCATCAAGAATTTCATGTCTGCATCATACACCGTGACATTAAATCTAGCAATGTTCTTCTTGATGATGAGTTTCAGCCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCCTACCTGATGATCATAGTCATCTCAGCACTAAATTTGCAGGAACATTGGGTTACACAGCTCCTGAATATGCCATCCATGGGCAACTCTCTGAGAAGGTTGACACATACAGCTTTGGTGTTGTCGTTTTGGAAATAATAAGTGGCAGGAAGCTCAATGATGCAAGGCTGGATCCTGATAGCCAGTACCTACTTGAATGGGCCTGGAAGCTTTATGAAAACAACAACTTGATTGAATTGGTGGATAAATCATTAGACCCAAAAGAATATAATCCTGAAGAGGTGAAAAAAATAATACAGATAGCCCTTCTCTGCACTCAATCAGCTGTTGCTTCACGTCCAACGATGTCAGAGGTAGTTGTGTTGTTGCTGACCAAAAATTCTTCAGAGTTCCAGCCCACTAGGCCTACTTTTATTGATGCAATAAGTAGAGTACGAGGTGAAACATCCTCCTCCAGTTCATCTTCTGCATCCAAGGCCACTATTTCGATAACACAGTATTCAGCCAGGTAAAAAAAAGTTGTATATGATGTGCTTCTCTTTTTTTTTGTAACTTCTATATTTGTATCTGTATCTTTGTTTTATGCAGCAACAAGTGGATGTTTACTTGTGAGCATAAACAAAAACAGTGTAAATCATCTGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGTAACTATGAGTCCCATAGCATTTGTCCTTGTAACTGTTCTCAGACAAATCACTGCACTCCTTGTATGCTCGGATCATATTTGAGTGAAAATTTGAAA]


>consensus_9045#0 CACGGCCGCGGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGCGCAGTGCCGCCCCTA CGTCACGCGCGGGGACTGCGTCGCGTGCTTCGACGCCGCGGCCACGCTCCTCCGCGCCGC CTGCGGCGCTGCCAACGGCGGGCGCGCCATTCTCGACGGCTGCGTCGTGAGGTACGAGAG CGCGGCCTTCTTCGACCAGGCCACGCTCCCCGGGAACACGCAGGTGTGCAACGGCTCCGC TGTCGCCGGCGGCGGGTTCGCGGACGCGGCGCGGGGGCTGGTCGGTGACCTCGTGGCTGC CGTGCCTCGCGCCCTGGGGCTCGCCGCGGCGGCCGCGGGCGCCGGCGTGTACGCCGCGGC GCAGTGTGTGGTGACGGTCGGGGAGGGTGGCTGCGCGCAGTGCCTGGAGGTGGCCGTGAG GAACATCGACGGGTGCCCGCCCAATTCCGACGGCCGCGCCGTCGACGCCGGCTGCTTCAT GAGGGAAATCAGATCGGAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGTGGCCTTCC TGTTCCTTCTTGGTCTATTAGCTTTCTTGTGGACCTGGCGGTCTAGGAAGCTGTTGAAGC CTCGTAGAGGAGATATACTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTTTTACTATC AAGATCTGAAGGTTGCAACCAATAATTTCTGTGAGGAAAGCAAACTTGGAGAAGGGGGTT TTGGAGATGTATTTAAGGGTTTGCTGAAAAATGGAAAAACTGTAGCTGTAAAACGGTTGA CAGTGATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCA ATGTTCATCATCGGAATCTTGTCAGGCTTCTTGGTTGCTCTAGCAAGGGCTCGGAATGCC TGCTTGTTTATGAATACATGGCAAATGGAAGCCTCGACAAGTTCCTCTTCGGTGATAAAC GTGGTACGCTTAATTGGAAGCAACGATTTAACATCATCGTTAGCATGGCTCGTGGCCTTG GATATCTTCATCAAGAATTTCATGTCTGCATCATACACCGTGACATTAAATCTAGCAATG TTCTTCTTGATGATGAGTTTCAGCCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCCTAC CTGATGATCATAGTCATCTCAGCACTAAATTTGCAGGAACATTGGGTTACACAGCTCCTG AATATGCCATCCATGGGCAACTCTCTGAGAAGGTTGACACATACAGCTTTGGTGTTGTCG TTTTGGAAATAATAAGTGGCAGGAAGCTCAATGATGCAAGGCTGGATCCTGATAGCCAGT ACCTACTTGAATGGGCCTGGAAGCTTTATGAAAACAACAACTTGATTGAATTGGTGGATA AATCATTAGACCCAAAAGAATATAATCCTGAAGAGGTGAAAAAAATAATACAGATAGCCC TTCTCTGCACTCAATCAGCTGTTGCTTCACGTCCAACGATGTCAGAGGTAGTTGTGTTGT TGCTGACCAAAAATTCTTCAGAGTTCCAGCCCACTAGGCCTACTTTTATTGATGCAATAA GTAGAGTACGAGGTGAAACATCCTCCTCCAGTTCATCTTCTGCATCCAAGGCCACTATTT CGATAACACAGTATTCAGCCAGGTAAAAAAAAGTTGTATATGATGTGCTTCTCTTTTTTT TTGTAACTTCTATATTTGTATCTGTATCTTTGTTTTATGCAGCAACAAGTGGATGTTTAC TTGTGAGCATAAACAAAAACAGTGTAAATCATCTGAAATCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGTAACT ATGAGTCCCATAGCATTTGTCCTTGTAACTGTTCTCAGACAAATCACTGCACTCCTTGTA TGCTCGGATCATATTTGAGTGAAAATTTGAAA



consensusID : consensus_9045#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1677
fasta sequence
                              [GCACCGGGGCTCGCCGCGGCGGCCGCTCGCGGCGGCGTGTACGCGGCGGCGCAGTGCGTGGAGACGGTCGGGGAGGGCGGGTGCGAGCAGTGCCTGGCGGTGGCGGCGAGGAACATCGACGGGTGCCCGCCGGACTCCGACGGCCGCGCCGTGGACGCCGGCTGCTTCATGAGGTACTCCGACAAGCCGTTCTTCCCGGCGAACGCGACCATAGACCTGGCGCCATACTTGCGATCACCTGGGAAATCAAATCACAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGTGGCATTCCTGCTCCTTGGCCTATTGGCACTCTTCTGGACCAGGCAGTCTAAGAAGCCGTTGAAGCCTCGTAGAGGAGATATTCTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTTTTACTATAAAGATCTAAAGGTTGCAACCAATAATTTCAGTGAGCAAAGCAAACTTGGAGAAGGGGGATTTGGAGATGTATTTAAGGCTTCGCTGAAAAATGGGAAAACTGTAGCTGTAAAACGGTTAACAGTTATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCAATGTTCATCATCGGAATCTTGTCCGGCTTCTTGGTTGCGCAAGCAAGGGCTCAGAATGCCTGCTTGTTTATGAATACATGGC-AAATGGAAGCCTTGATAAGTTCCTCTTTGGCGAGAAAAGTGTCGCCCTCAATTGGAAGCAGCGATTTAATATCATTATCGGCATGGCTCGTGGCCTTGCATATCTTCATGAAGAATTCCATGTGCGCATCATACACCGTGACATTAAATCTAGCAATGTTCTTCTTGATGACGAGTCTCAACCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCATACCTGATGATCATAGTCATCTCAGCACTAATTTTGCAGGAACATTGGGTTACACAGCTCCTGAGTATGCCATCCACGGGCAACTCTCAGAGAAGGTTGACACATACGGCTTTGGTGTAGTCACTTTAGAAATAATAGGTGGTAGGAAGCTCAATGATGCAAGGCTGGAGCCTGATAGCCAGTACCTGCTTGAATGGGCCTGGAAGCTTTATGAAGACAACAACTTGATTGAATTGGTGGACAGATCATTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAAT-GGAGATTG-CCCTTCTGTGCACTCAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTAG-TTGTGTTGTTGCTGACAAGAAATACTCTAGAGTTCCAGCCCACGAGACCGACTTTTATCGATGCAACTCGTAGAGTGCCAGGTGAAACATCAACCTCCAGTTCATCTTCTGCATCCAAAGCTACTGTTTCGATATCACAACTTTCAGCCAGGTGAAAGGTGTTCTAAATAAATGTGCTTATTTTGATTGTGTGTAAATGCTATTTATTTGTATATGTATCTATGTTCTTCACGTCAACAAGTGGATATTTACTTGTGAGTTGCACGTAGAACATGTGTTCTCTTTTTTTTTTCTTCTCTCTTTTCCTATTCATATAATCGCGACTTGCATGGCATTTACCATGTCTGTTCTGACACAATTATTTTGTGTATGTTTGGAACACATTGGAGTGAGAATTTGAAAAATATTGCTTTGATATTTAA-AAAAAAGGA]

[+] EMBL CB618785             [GCACCGGGGCTCGCCGCGGCGGCCGCTCGCGGCGGCGTGTACGCGGCGGCGCAGTGCGTGGAGACGGTCGGGGAGGGCGGGTGCGAGCAGTGCCTGGCGGTGGCGGCGAGGAACATCGACGGGTGCCCGCCGGACTCCGACGGCCGCGCCGTGGACGCCGGCTGCTTCATGAGGTACTCCGACAAGCCGTTCTTCCCGGCGAACGCGACCATAGACCTGGCGCCATACTTGCGATCACCTGGGAAATCAAATCACAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGTGGCATTCCTGCTCCTTGGCCTATTGGCACTCTTCTGGACCAGGCAGTCTAAGAAGCCGTTGAAGCCTCGTAGAGGAGATATTCTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTTTTACTATAAAGATCTAAAGGTTGCAACCAATAATTTCAGTGAGCAAAGCAAACTTGGAGAAGGGGGATTTGGAGATGTATTTAAGGCTTCGCTGAAAAATGGGAAAACTGTAGCTGTAAAACGGTTAACAGTTATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCAATGTTCATCATCGGAATCTTGTCCGGCTTCTTGGTTGCGCAAGCAAGGGCTCAGAATGCCTGCTTGTTTATGAATACATGGCAAAATGGAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA765478             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GATGTATTTAAGGCTTCGCTGAAAAATGGGAAAACTGTAGCTGTAAAACGGTTAACAGTTATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCAATGTTCATCATCGGAATCTTGTCCGGCTTCTTGGTTGCGCAAGCAAGGGCTCAGAATGCCTGCTTGTTTATGAATACATGGC AAATGGAAGCCTTGATAAGTTCCTCTTTGGCGAGAAAAGTGTCGCCCTCAATTGGAAGCAGCGATTTAATATCATTATCGGCATGGCTCGTGGCCTTGCATATCTTCATGAAGAATTCCATGTGCGCATCATACACCGTGACATTAAATCTAGCAATGTTCTTCTTGATGACGAGTCTCAACCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCATACCTGATGATCATAGTCATCTCAGCACTAATTTTGCAGGAACATTGGGTTACACAGCTCCTGAGTATGCCATCCACGGGCAACTCTCAGAGAAGGTTGACACATACGGCTTTGGTGTAGTCACTTTAGAAATAATAGGTGGTAGGAAGCTCAATGATGCAAGGCTGGAGCCTGATAGCCAGTACCTGCTTGAATGGGCCTGGAAGCTTTATGAAGACAACAACTTGATTGAATTGGTGGACAGATCATTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAATGGGAGATTGNCCCTTCTGTGCACTCAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTAGTTTGGGTTGNTGCTGACAA AAATACTCTANAGNTNCAGCCCACGAGACCGACTTTTATCGATGCAACTCGGAAAGNGCAAGGngn                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB633345             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GATCATAGTCATCTCAGCACTAATTTTGCAGGAACATTGGGTTACACAGCTCCTGAGTATGCCATCCACGGGCAACTCTCAGAGAAGGTTGACACATACGGCTTTGGTGTAGTCACTTTAGAAATAATAGGTGGTAGGAAGCTCAATGATGCAAGGCTGGAGCCTGATAGCCAGTACCTGCTTGAATGGGCCTGGAAGCTTTATGAAGACAACAACTTGATTGAATTGGTGGACAGATCATTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAAT GGAGATTG CCCTTCTGTGCACTCAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTAG TTGTGTTGTTGCTGACAAGAAATACTCTAGAGTTCCAGCCCACGAGACCGACTTTTATCGATGCAACTCGTAGAGTGCCAGGTGAAACATCAACCTCCAGTTCATCTTCTGCATCCAAAGCTACTGTTTCGATATCACAACTTTCAGCCAGGTGAAAGGTGTTCTAAATAAATGTGCTTATTTTGATTGTGTGTAAATGCTATTTATTTGTATATGTATCTATGTTCTTCACGTCAACAAGTGGATATTTACTTGTGAGTTGCACGTAGAACATGTGTTCTCTTTTTTTTTTCTTCTCTCTTTTCCTATTCATATAATCGCGACTTGCATGGCATTTACCATGTCTGTTCTGACACAATTATTTTGTGTATGTTTGGAACACATTGGAGTGAGAATTTGAAAAATATTGCTTTGATATTTAA AAAAAAGGA]
[-] EMBL CB618786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATCCACGGGCAACTCTCAGAGAAGGTTGACACATACGGCTTTGGTGTAGTCACTTTAGAAATAATAGGTGGTAGGAAGCTCAATGATGCAAGGCTGGAGCCTGATAGCCAGTACCTGCTTGAATGGGCCTGGAAGCTTTATGAAGACAACAACTTGATTGAATTGGTGGACAGATCATTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAAT GGAGATTG CCCTTCTGTGCACTCAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTAG TTGTGTTGTTGCTGACAAGAAATGCTCTAGAGTTCCAGCCCACGAGACCGACTTTTATCGATGCAACTCGTAGAGTGCCAGGTGAAACATCAACCTCCAGTTCATCTTCTGCATCCAAAGCTACTGTTTCGATATCACAACTTTCAGCCAGGTGAAAGGTGTTCTAAATAAATGTGCTTATTTTGATTGTGTGTAAATGCTATTTATTTGTATATGTATCTATGTTCTTCACGTCAACAAGTGGATATTTACTTGTGAGTTGCACGTAGAACATGTGTTCTC TTTTTTTTTCTTCTCTCTTTTCCTATTCATATAATCGCGACTTGCATGGCATTTACCATGTCTGTTCTGACACAATTATTTTGTGTATGTTTGGAACACATTTGAGTGAGAATTTGAAAAATATTGCTTTGAAAAAAAACAAAAAAGa ]


>consensus_9045#1 GCACCGGGGCTCGCCGCGGCGGCCGCTCGCGGCGGCGTGTACGCGGCGGCGCAGTGCGTG GAGACGGTCGGGGAGGGCGGGTGCGAGCAGTGCCTGGCGGTGGCGGCGAGGAACATCGAC GGGTGCCCGCCGGACTCCGACGGCCGCGCCGTGGACGCCGGCTGCTTCATGAGGTACTCC GACAAGCCGTTCTTCCCGGCGAACGCGACCATAGACCTGGCGCCATACTTGCGATCACCT GGGAAATCAAATCACAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGTGGCATTCCTG CTCCTTGGCCTATTGGCACTCTTCTGGACCAGGCAGTCTAAGAAGCCGTTGAAGCCTCGT AGAGGAGATATTCTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTTTTACTATAAAGAT CTAAAGGTTGCAACCAATAATTTCAGTGAGCAAAGCAAACTTGGAGAAGGGGGATTTGGA GATGTATTTAAGGCTTCGCTGAAAAATGGGAAAACTGTAGCTGTAAAACGGTTAACAGTT ATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTTGATTAGCAATGTT CATCATCGGAATCTTGTCCGGCTTCTTGGTTGCGCAAGCAAGGGCTCAGAATGCCTGCTT GTTTATGAATACATGGCAAATGGAAGCCTTGATAAGTTCCTCTTTGGCGAGAAAAGTGTC GCCCTCAATTGGAAGCAGCGATTTAATATCATTATCGGCATGGCTCGTGGCCTTGCATAT CTTCATGAAGAATTCCATGTGCGCATCATACACCGTGACATTAAATCTAGCAATGTTCTT CTTGATGACGAGTCTCAACCAAAGATTGCTGATTTCGGTTTAGCAAGGCTCATACCTGAT GATCATAGTCATCTCAGCACTAATTTTGCAGGAACATTGGGTTACACAGCTCCTGAGTAT GCCATCCACGGGCAACTCTCAGAGAAGGTTGACACATACGGCTTTGGTGTAGTCACTTTA GAAATAATAGGTGGTAGGAAGCTCAATGATGCAAGGCTGGAGCCTGATAGCCAGTACCTG CTTGAATGGGCCTGGAAGCTTTATGAAGACAACAACTTGATTGAATTGGTGGACAGATCA TTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAATGGAGATTGCCCTTCTG TGCACTCAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTAGTTGTGTTGTTGCTG ACAAGAAATACTCTAGAGTTCCAGCCCACGAGACCGACTTTTATCGATGCAACTCGTAGA GTGCCAGGTGAAACATCAACCTCCAGTTCATCTTCTGCATCCAAAGCTACTGTTTCGATA TCACAACTTTCAGCCAGGTGAAAGGTGTTCTAAATAAATGTGCTTATTTTGATTGTGTGT AAATGCTATTTATTTGTATATGTATCTATGTTCTTCACGTCAACAAGTGGATATTTACTT GTGAGTTGCACGTAGAACATGTGTTCTCTTTTTTTTTTCTTCTCTCTTTTCCTATTCATA TAATCGCGACTTGCATGGCATTTACCATGTCTGTTCTGACACAATTATTTTGTGTATGTT TGGAACACATTGGAGTGAGAATTTGAAAAATATTGCTTTGATATTTAAAAAAAAGGA



consensusID : consensus_9045#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence
                              [GCTCGCCGGAGCGGCGAGGCGGTGCAACATGGATCGTCTCCTGCTCGCGCCGTCTGCGGTGGCGCTGCTGGTGGTTGCCTCGGCGTGGGTTCCGGCCGCCGCTGACCCGCAGATCACGCTGCTCAACCTGGGGTGCAGCCAGTACAACGCGACACCGGCCGCCGCCTTCCTCGCCGCCCTCAACGCCACCTTCGCCGTGCTCCGCGCCAACCTGTCGTCGGCTGGTGGCGGTGGTGGCTTCCCCACGGCGGCCGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGAGCAGTGCCGCCCGTACGTCGCGGGGACGGGCAGCTGCGCCGCGTGCTTCAACGCCGCGGCGTCGCGCCTCCGCGCCAGGTGCTGCGCCGCCAACGGCGGGCGCG]

[+] EMBL CB633344             [GCTCGCCGGAGCGGCGAGGCGGTGCAACATGGATCGTCTCCTGCTCGCGCCGTCTGCGGTGGCGCTGCTGGTGGTTGCCTCGGCGTGGGTTCCGGCCGCCGCTGACCCGCAGATCACGCTGCTCAACCTGGGGTGCAGCCAGTACAACGCGACACCGGCCGCCGCCTTCCTCGCCGCCCTCAACGCCACCTTCGCCGTGCTCCGCGCCAACCTGTCGTCGGCTGGTGGCGGTGGTGGCTTCCCCACGGCGGCCGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGAGCAGTGCCGCCCGTACGTCGCGGGGACGGGCAGCTGCGCCGCGTGCTTCAACGCCGCGGCGTCGCGCCTCCGCGCCAGGTGCTGCGCCGCCAACGGCGGGCGCG]


>consensus_9045#2 GCTCGCCGGAGCGGCGAGGCGGTGCAACATGGATCGTCTCCTGCTCGCGCCGTCTGCGGT GGCGCTGCTGGTGGTTGCCTCGGCGTGGGTTCCGGCCGCCGCTGACCCGCAGATCACGCT GCTCAACCTGGGGTGCAGCCAGTACAACGCGACACCGGCCGCCGCCTTCCTCGCCGCCCT CAACGCCACCTTCGCCGTGCTCCGCGCCAACCTGTCGTCGGCTGGTGGCGGTGGTGGCTT CCCCACGGCGGCCGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGAGCAGTGCCGCCC GTACGTCGCGGGGACGGGCAGCTGCGCCGCGTGCTTCAACGCCGCGGCGTCGCGCCTCCG CGCCAGGTGCTGCGCCGCCAACGGCGGGCGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9045#0      CACGGCCGCGGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGCGCAGTGCCGCCCCTA 60
consensus_9045#1      ------------------------------------------------------------
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      CGTCACGCGCGGGGACTGCGTCGCGTGCTTCGACGCCGCGGCCACGCTCCTCCGCGCCGC 120
consensus_9045#1      ------------------------------------------------------------
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      CTGCGGCGCTGCCAACGGCGGGCGCGCCATTCTCGACGGCTGCGTCGTGAGGTACGAGAG 180
consensus_9045#1      ------------------------------------------------------------
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      CGCGGCCTTCTTCGACCAGGCCACGCTCCCCGGGAACACGCAGGTGTGCAACGGCTCCGC 240
consensus_9045#1      ------------------------------------------------------------
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      TGTCGCCGGCGGCGGGTTCGCGGACGCGGCGCGGGGGCTGGTCGGTGACCTCGTGGCTGC 300
consensus_9045#1      ------------------------------------------------------------
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      CGTGCCTCGCGCCCTGGGGCTCGCCGCGGCGGCCGCGGGCGCCGGCGTGTACGCCGCGGC 360
consensus_9045#1      ----------GCACCGGGGCTCGCCGCGGCGGCCGCTCGCGGCGGCGTGTACGCGGCGGC 50
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GCAGTGTGTGGTGACGGTCGGGGAGGGTGGCTGCGCGCAGTGCCTGGAGGTGGCCGTGAG 420
consensus_9045#1      GCAGTGCGTGGAGACGGTCGGGGAGGGCGGGTGCGAGCAGTGCCTGGCGGTGGCGGCGAG 110
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GAACATCGACGGGTGCCCGCCCAATTCCGACGGCCGCGCCGTCGACGCCGGCTGCTTCAT 480
consensus_9045#1      GAACATCGACGGGTGCCCGCCGGACTCCGACGGCCGCGCCGTGGACGCCGGCTGCTTCAT 170
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GAGG-------------------------------------------------------- 484
consensus_9045#1      GAGGTACTCCGACAAGCCGTTCTTCCCGGCGAACGCGACCATAGACCTGGCGCCATACTT 230
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      ------------GAAATCAGATCGGAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGT 532
consensus_9045#1      GCGATCACCTGGGAAATCAAATCACAAAGGAGCCATCATAGGAGGAATTTTAGGAGGTGT 290
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GGCCTTCCTGTTCCTTCTTGGTCTATTAGCTTTCTTGTGGACCTGGCGGTCTAGGAAGCT 592
consensus_9045#1      GGCATTCCTGCTCC---TTGGCCTATTGGCACTCTTCTGGACCAGGCAGTCTAAGAAGCC 347
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GTTGAAGCCTCGTAGAGGAGATATACTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTT 652
consensus_9045#1      GTTGAAGCCTCGTAGAGGAGATATTCTTGGAGCAACAGAACTGCAGGGTCCAACAAGTTT 407
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      TTACTATCAAGATCTGAAGGTTGCAACCAATAATTTCTGTGAGGAAAGCAAACTTGGAGA 712
consensus_9045#1      TTACTATAAAGATCTAAAGGTTGCAACCAATAATTTCAGTGAGCAAAGCAAACTTGGAGA 467
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      AGGGGGTTTTGGAGATGTATTTAAGGGTTTGCTGAAAAATGGAAAAACTGTAGCTGTAAA 772
consensus_9045#1      AGGGGGATTTGGAGATGTATTTAAGGCTTCGCTGAAAAATGGGAAAACTGTAGCTGTAAA 527
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      ACGGTTGACAGTGATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTT 832
consensus_9045#1      ACGGTTAACAGTTATGGAAACTAGCAGGGCCAAAGCAGATTTTGAAAGTGAAGTGAAGTT 587
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GATTAGCAATGTTCATCATCGGAATCTTGTCAGGCTTCTTGGTTGCTCTAGCAAGGGCTC 892
consensus_9045#1      GATTAGCAATGTTCATCATCGGAATCTTGTCCGGCTTCTTGGTTGCGCAAGCAAGGGCTC 647
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GGAATGCCTGCTTGTTTATGAATACATGGCAAATGGAAGCCTCGACAAGTTCCTCTTCGG 952
consensus_9045#1      AGAATGCCTGCTTGTTTATGAATACATGGCAAATGGAAGCCTTGATAAGTTCCTCTTTGG 707
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      TGATAAACGTGGTACGCTTAATTGGAAGCAACGATTTAACATCATCGTTAGCATGGCTCG 1012
consensus_9045#1      CGAGAAAAGTGTCGCCCTCAATTGGAAGCAGCGATTTAATATCATTATCGGCATGGCTCG 767
consensus_9045#2      ------------------------------------------GCTCGCCGGAGCGGC--G 16
                                                                  *     *   ***  *

consensus_9045#0      TGGCCTTGGATATCTTCATCAAGAATTTCATGTCTGCATCATACACCGTGACATTAAATC 1072
consensus_9045#1      TGGCCTTGCATATCTTCATGAAGAATTCCATGTGCGCATCATACACCGTGACATTAAATC 827
consensus_9045#2      AGGCGGTGCAA-----CATGGATCGTCTCCTGCTCGCGCCGTCTGCGGTGGCG------C 65
                       ***  ** *      ***  *   *  * **   **  * *   * *** *       *

consensus_9045#0      TAGCAATGTTCTTCTTGATGATGAGTTTCAGCCAAAGATTGCTGATTTCGGTTTAGCAAG 1132
consensus_9045#1      TAGCAATGTTCTTCTTGATGACGAGTCTCAACCAAAGATTGCTGATTTCGGTTTAGCAAG 887
consensus_9045#2      TGCTGGTGGTTGCCTCGGCG-TGGGTTCCGGCCG----CCGCTGACCCGCAGATCACGCT 120
                      *     ** *   ** *  *  * **  *  **       *****        *  *   

consensus_9045#0      GCTCCTACCTGATGATCATAGTCATCTCAGCACTAAATTTGCAGGAACATTGGGTTACAC 1192
consensus_9045#1      GCTCATACCTGATGATCATAGTCATCTCAGCACTAATTTTGCAGGAACATTGGGTTACAC 947
consensus_9045#2      GCTCA-ACCTGGGG--TGCAGCCAGTACAACGCGACACCGGCCGCCGCCTT---CCTCGC 174
                      ****  *****  *     ** **   ** * * *     ** *   * **      * *

consensus_9045#0      AGCTCCTGAATATGCCATCCATGGGCAACTCTCTGAGAAGGTTGACACATACAGCTTTGG 1252
consensus_9045#1      AGCTCCTGAGTATGCCATCCACGGGCAACTCTCAGAGAAGGTTGACACATACGGCTTTGG 1007
consensus_9045#2      CGCCCTCAACGCCACCTTCGCCGTGCTCCGCGCCAACCTGTCGTCGGCTGGTGGCGGTGG 234
                       ** *   *     ** **   * **  * * *  *   *       *     **  ***

consensus_9045#0      TGTTGTCGTTTTGGAAATAATAAGTGGCAGGAAGCT-CAATGATGCAAG-GCTGGATCCT 1310
consensus_9045#1      TGTAGTCACTTTAGAAATAATAGGTGGTAGGAAGCT-CAATGATGCAAG-GCTGGAGCCT 1065
consensus_9045#2      TGGCTTCCCCACGGCGGC--CGAGCCGCGCGCCGCCGCGCCGGCGTTCGCGATGGAGCAG 292
                      **   **      *         *  *   *  **  *   *  *   * * **** *  

consensus_9045#0      GATAGCCAGTACCTACTTGAATGGGCCTGGAAGCTTTATGAAAACAACAACTTGATTGAA 1370
consensus_9045#1      GATAGCCAGTACCTGCTTGAATGGGCCTGGAAGCTTTATGAAGACAACAACTTGATTGAA 1125
consensus_9045#2      TGCCGCCCGTACGT-CGCG---GGGACGGGCAGCTGCGC-----CGCGTGCTTCAACGCC 343
                          *** **** * *  *   *** * ** ****         *     *** *  *  

consensus_9045#0      TTGGTGGATAAATCATTAGACCCAAAAGAATATAATCCTGAAGAGGTGAAAAAAATAATA 1430
consensus_9045#1      TTGGTGGACAGATCATTAGACCCAGAAGAATACAATCACGAGGAGGTGAAAAGAACAATG 1185
consensus_9045#2      GCGGCGT-CGCGCCTCCGCGCCAGGTGCTGCGCCGCCAACGGCGGGCGCG---------- 392
                        ** *       *      **              *       ** *            

consensus_9045#0      CAGATAGCCCTTCTCTGCACTCAATCAGCTGTTGCTTCACGTCCAACGATGTCAGAGGTA 1490
consensus_9045#1      GAGATTGCCCTTCTGTGCACTCAATCGGCTGTCACATCACGGCCAATGATGTCGGAGGTA 1245
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GTTGTGTTGTTGCTGACCAAAAATTCTTCAGAGTTCCAGCCCACTAGGCCTACTTTTATT 1550
consensus_9045#1      GTTGTGTTGTTGCTGACAAGAAATACTCTAGAGTTCCAGCCCACGAGACCGACTTTTATC 1305
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GATGCAATAAGTAGAGTACGAGGTGAAACATCCTCCTCCAGTTCATCTTCTGCATCCAAG 1610
consensus_9045#1      GATGCAACTCGTAGAGTGCCAGGTGAAACATCAACCTCCAGTTCATCTTCTGCATCCAAA 1365
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      GCCACTATTTCGATAACACAGTATTCAGCCAGGTAAAAAAAAGTTGTATATGA-TGTGCT 1669
consensus_9045#1      GCTACTGTTTCGATATCACAACTTTCAGCCAGGTGAAAGGT-GTTCTAAATAAATGTGCT 1424
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      TCTCTTTTTTTT-TGTAACTTCTAT--ATTTGTATCTGTATCTTTGTTTTATGCAGCAAC 1726
consensus_9045#1      TATTTTGATTGTGTGTAAATGCTATTTATTTGTATATGTATCTATGTTCTTCACGTCAAC 1484
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      AAGTGGATGTTTACTTGTGAGCATAAACAAAAACAGTGTAAATCATCTGAAATCTCTCTC 1786
consensus_9045#1      AAGTGGATATTTACTTGTGAGT-TGCAC---------GTAGAACATGTGTTCTCTTTTTT 1534
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      TCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 1845
consensus_9045#1      TTTTCTTCTCTCTTTTCCTATTCATATAATCGCGACTTGCATGGCATTTACCATGTCTGT 1594
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      CTCGTCCATGTAACTATGAGTCC-CATAGCATTTGTCCTTGTAACTGTTCTCAGACAAAT 1904
consensus_9045#1      TCTGACACAATTATTTTGTGTATGTTTGGAACACATTGGAGTGAGAATT-TGAAAAATAT 1653
consensus_9045#2      ------------------------------------------------------------
                                                                                  

consensus_9045#0      CACTGCACTCCTTGTATGCTCGGATCATATTTGAGTGAAAATTTGAAA 1952
consensus_9045#1      TGCTTTGATATTTAAAAAAAAGGA------------------------ 1677
consensus_9045#2      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)