These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGGCTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCTG-CAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGNCGGCTTCAAACTTGGCG-CCTNTTCGCCAANAAAGGCTGAAGAATCCTTTCGAATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGNGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS16467A [CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGGCTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCTG CAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGNCGGCTTCAAACTTGGCG CCTNTTC ] [+] EMBL AU089817 [ GAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGG CCAGCTNGTCNAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCNCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAANAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGNTTCAACCTCGGNGCCCTTTTCGCCAANAAAGGCTGAAGAATCCTTTCGAATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGNGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [CGGCGTGCCTCGCGTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCACGAGGGGGAACCGGCGCCGCGGAGGAGGAGAAGAGCCTCCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGTGGTTTATATACTTCATACACACACATCATTTGTTATTTCTTTTCAACTCAACATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA] [+] EMBL BI799434 [CGGCGTGCCTCGCGTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCACGAGGGGGAACCGGCGCCGCGGAGGAGGAGAAGAGCCTCCCGACTTCATCTTCGGCTTCATCTTCAAGAAGGACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGTGGTTTATATACTTCATACACACACATCATTTGTTATTTCTTTTCAACTCAACATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA] consensusID : consensus_9055#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [GACGCATCACCCATCTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCAACATGGGTGAATGGATTAAAAGGGTT] [+] EMBL AK121165 [GACGCATCACCCATCTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGGCGCCGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGGCTCCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAGGCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTTCGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGTATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGATTTGCGTATACGTAGCAACATGTGAGGTGTGACTCAAAAGTGATTAATTTTTTATGTGAAAATGTGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCAACATGGGTGAATGGATTAAAAGGGTT] consensusID : consensus_9055#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [CNCAATGGCGGCGGCGGGCGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCAGCCGTCNCGGGTNGNGATTGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGAAGAAAAAACCTCGCCGACTTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAAACCGACCCGCTGCTCAACAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT] [+] EMBL BE228829 [CNCAATGGCGGCGGCGGGCGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCAGCCGTCNCGGGTNGNGATTGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGAAGAAAAAACCTCGCCGACTTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAAACCGACCCGCTGCTCAACAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT] consensusID : consensus_9055#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [CAGAGGACGAGACAAGGGGCAACATGTGACGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA766436 [CAGAGGACGAGACAAGGGGCAACATGTGACGGTGTGACTCAAAAGTGATTAATTTTTTATGTGATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9055#2 ------------------------------------------------------------ consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 CTCATTCTCATCATCGTCGCGTGAGAGAGAGCTAGAGCTGAGCTAAGAATCATGGCTTCG 60 consensus_9055#1 ------------------------------------------------------------ consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 --------------------------------------------------GACGCATCAC 10 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 GTGGGATTCGGGAGCAGAGTGGCGGCGGCGGGCGTGGCGCCGTCGGGTCGTCGTCGTCGG 120 consensus_9055#1 -----------------------------------------------CGGCGTGCCTCGC 13 consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 CCATCTCATTCTCATCATCGTCGCGTGAGAGAG-AGCTAGAGCTGAGCTAAGAATCATGG 69 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 CTGGGCGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGCGCCACGAGGGGGAAGCCGG 180 consensus_9055#1 GTCTCTCGTCGCTGGCGGAGCGCTCGCGGTGCGATGCGTCGGCGCCACGAGGGGGAACCG 73 consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 CTTCGGTGGGATTCGGGAGCAGAGTGGAGGCGGCCGTCGCGGGTGGCGATGGCGGTCGGC 129 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 CGCCGGCGGAGGAGGAGAAGAGCCTCGCCGACTTCATCTTCGGCTTCATCTTCAAGAAGG 240 consensus_9055#1 GCGCCGCGGAGGAGGAGAAGAGCCTCCCGAC-TTCATCTTCGGCTTCATCTTCAAGAAGG 132 consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 GCCACGAGGGGGAAGCCGGCGC----CGGCGGAGGAGGAGAAGAGCCTCGCCCTCCGGCT 185 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 ACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCT 300 consensus_9055#1 ACCAGCTCGTCGAGACCGACCCGCTGCTCAACAAGGTCGACGGCGCGCCGCCCTCCGGCT 192 consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 CCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAG 245 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 CCACTGTCTCCCGGAAGGCCCCTGC-AAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAG 359 consensus_9055#1 CCACTGTCTCCCGGAAGGCCCCCGCCAAGAAGCCCGCGGCGAGCGCCGCCGACGAGGAAG 252 consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 GCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTT 305 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 GCGGCGGCGNCGGCTTCAAACTTGGCGCC-TNTTCGCCAANAAAGGCTGAAGAATCCTTT 418 consensus_9055#1 GCGGCGGCGGCGGCTTCAACCTCGGCGCCCTCTTCGCCAAGAAAGGCTGAAGAATCCTTT 312 consensus_9055#3 ------------------------------------------------------------ consensus_9055#2 CGAATTCTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGT 365 consensus_9055#4 ------------------------------------------------------------ consensus_9055#0 CGAATTNTACGTACGTATATACTCCAACGCAGAGCGTCAGCTTGCCTACACGATCGATGT 478 consensus_9055#1 CGAATTCTACGTACGTATATACTCCA-CGCAGAGCGTCAGCTTGCCTACACGATCGATGT 371 consensus_9055#3 ------------------------------------------CNCAATGGCGGCGGCGGG 18 consensus_9055#2 ATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGAT 425 consensus_9055#4 -------------------------------------------------CAGAGGACGAG 11 consensus_9055#0 ATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCAAGCTTAATTTGGAGGATGAT 538 consensus_9055#1 ATTACCCTCCTCCTCATCAAACAGTTTGATTCAAACTCCCAGCTTAATTTGGAGGATGAT 431 consensus_9055#3 CGTGGCGCCCTCAGCGTCCTCNTCNTCGGCTGGGCGGAAGCAGCCGTCNCGGGTNGNGAT 78 * ** consensus_9055#2 TTGCGTATACGTAGCAACATGTGA---GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 482 consensus_9055#4 ------ACAAGGGGCAACATGTGAC--GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 63 consensus_9055#0 TTGNGTATACGTAGCAACATGTGA---GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 595 consensus_9055#1 TTGCGTATACGTAGCAACATGTGA---GGTGTGACTCAAAAGTGATTAATTTTTTATGTG 488 consensus_9055#3 TGCGGTCGGCGCCACCAAGGGGAAGCCGGCGCCGGCGGANGAAGAAAAAACCTCGCCGAC 138 * * * * * ** * * ** ** * * consensus_9055#2 AAAATG-TGGTTTATATACTTCATACAACACACATCATTTGTTATTTCTTTTCAACTCAA 541 consensus_9055#4 ATAATGGTGGTTTATATAAAAAAAAAAAAAAAAAAAAAA--------------------- 102 consensus_9055#0 AAAATG-TGGTTTATATACTTCAAAAAAAAAAAAAAAAAAAA------------------ 636 consensus_9055#1 ATAATG-TGGTTTATATACTTCATACA-CACACATCATTTGTTATTTCTTTTCAACTCAA 546 consensus_9055#3 TTCATCTTCGGCTTCATCTTCAANAAAGACCANCTCNTCCAA-ACCGACCCGCTGCTCAA 197 ** * * * ** * * * * consensus_9055#2 CATGGGTGAATGGATTAAAAGGGTT------------------ 566 consensus_9055#4 ------------------------------------------- consensus_9055#0 ------------------------------------------- consensus_9055#1 CATGGATGAATGGATTAAAAGGGTTAAGCCTGCTGATCAAAAA 589 consensus_9055#3 CAAGGTCTACAGCGCGCCGCCCTCCGGCTCCACT--------- 231 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||