These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1951 fasta sequence [CCCCCACTCCCCCACCTCCTCCCGTCCTCCGGCCGCCGCTCCCCACCCGCCGCCGCCGCCGCCGCCCGCAGAAGCCGCAGATGGCGTCGTCGGCGTCCACCCTCGAGATCGAGGCCCGCGACGTGGTGAAGATAGTGCTGCAGTTCTGCAAGGAGAACTCGCTGCAGCAGACGTTCCAGACGCTGCAGAACGAGTGCCAGGTCTCGCTCAACACCGTCGACAGCATCGACACCTTCATCGCCGACATCAATGCCGGGCGCTGGGACGCTGTGCTGCCCCAGGTTGCGCAGCTCAAGCTGCCGCGCAAGAAGCTCGAGGACCTGTACGAGCAGATTGTGCTCGAGATGGCTGAGCTCCGTGAGCTGGACACGGCGCGCGCCATCCTCCGCCAGACCCAGGTCATGGGCGTCATGAAGCAGGAGCAGCCCGAGCGGTACCTCAGGCTTGAGCATCTCCTTGTCCGGACATACTTTGACCCCAATGAGGCCTACCAAGAATCCACCAAGGAGAAACGACGTGCACAGATTTCCCAAGCTATTGCTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGAAATGGCAACAGCACCAAGGATTGTTACCACCTGGCACACAGTTTGATTTATTTAGAGGAACTGCTGCAATGAAGCAAGATGAAGAGGAAACATATCCTACTACTTTATCACATCAAACAAAGTTCGGGAAGAAAACTCACCCTGAATGTGCTCGATTTTCACCTGATGGCCAGTACCTTGTATCATGCTCAGTGGATGGAATCATTGAGGTTTGGGATTATATCAGCGGGAAGCTTAAAAAGGATCTTCAATATCAAGCTGACGAAAGCTTCATGATGCACGATGATGCGGTGCTTTCTGTTGATTTCAGTAGAGATTCTGAGATGCTGGCATCTGGATCACAGGATGGAAAGATTAAGGTTTGGCGTATACGAACTGGCCAGTGTTTGCGTCGCCTCGAGCGTGCACATGCAAAAGGTGTTACAAGTGTTACATTCTCACGTGATGGAACTCAGATATTGAGTTCATCCTTTGACACTACTGCAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTTAAGGTGTGGGATACGAAAACAACAGATTGTTTGCAAACATTCAAGCCACCACCTCCTTTGAGGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCT-TC-AATA-TACA-TAATGACTCTACAAGGACAGGT-TGTAAAAAGTTTTTCATCTGGT-AAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTC-ACCA-AAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATC-ACTC-ACCACCCTCATAGGAACTT-GATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAAA-CAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGACTCTTGCTTTTATTGGAGCGCTGAAAATCTGAAATACTGAATGCAATTAC] [+] EMBL AK121409 [CCCCCACTCCCCCACCTCCTCCCGTCCTCCGGCCGCCGCTCCCCACCCGCCGCCGCCGCCGCCGCCCGCAGAAGCCGCAGATGGCGTCGTCGGCGTCCACCCTCGAGATCGAGGCCCGCGACGTGGTGAAGATAGTGCTGCAGTTCTGCAAGGAGAACTCGCTGCAGCAGACGTTCCAGACGCTGCAGAACGAGTGCCAGGTCTCGCTCAACACCGTCGACAGCATCGACACCTTCATCGCCGACATCAATGCCGGGCGCTGGGACGCTGTGCTGCCCCAGGTTGCGCAGCTCAAGCTGCCGCGCAAGAAGCTCGAGGACCTGTACGAGCAGATTGTGCTCGAGATGGCTGAGCTCCGTGAGCTGGACACGGCGCGCGCCATCCTCCGCCAGACCCAGGTCATGGGCGTCATGAAGCAGGAGCAGCCCGAGCGGTACCTCAGGCTTGAGCATCTCCTTGTCCGGACATACTTTGACCCCAATGAGGCCTACCAAGAATCCACCAAGGAGAAACGACGTGCACAGATTTCCCAAGCTATTGCTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGAAATGGCAACAGCACCAAGGATTGTTACCACCTGGCACACAGTTTGATTTATTTAGAGGAACTGCTGCAATGAAGCAAGATGAAGAGGAAACATATCCTACTACTTTATCACATCAAACAAAGTTCGGGAAGAAAACTCACCCTGAATGTGCTCGATTTTCACCTGATGGCCAGTACCTTGTATCATGCTCAGTGGATGGAATCATTGAGGTTTGGGATTATATCAGCGGGAAGCTTAAAAAGGATCTTCAATATCAAGCTGACGAAAGCTTCATGATGCACGATGATGCGGTGCTTTCTGTTGATTTCAGTAGAGATTCTGAGATGCTGGCATCTGGATCACAGGATGGAAAGATTAAGGTTTGGCGTATACGAACTGGCCAGTGTTTGCGTCGCCTCGAGCGTGCACATGCAAAAGGTGTTACAAGTGTTACATTCTCACGTGATGGAACTCAGATATTGAGTTCATCCTTTGACACTACTGCAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTTAAGGTGTGGGATACGAAAACAACAGATTGTTTGCAAACATTCAAGCCACCACCTCCTTTGAGGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCT TC AATA TACA TAATGACTCTACAAGGACAGGT TGTAAAAAGTTTTTCATCTGGT AAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTC ACCA AAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATC ACTC ACCACCCTCATAGGAACTT GATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAAA CAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGACTCTTGCTTTTATTGGAGCGCTGAAAATCTGAAATACTGAATGCAATTAC] [+] EMBL AA750070 [ GATATTGAGTTCATCCTTTGACACTACTGTAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACTCATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTGATTGTACTGTT AGGTGTGGGATACGAAAACAACAGATTG TTGC AACA TC AG CA CA CTC TTGA GGA GAGATGC ACTGTa ] [+] EMBL BQ908874 [ TAAGACATCTGTCAAANAGTACAGTAATGACTCTACAAGGACAGGTGTGTAAAAAGTTTTTCATCTGGTAAAACGGTAAGGGGGAGATTTCCTTGCAGCTTCCGTTTCTACCACAAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCTACTCTACCACCCTCATAGGAACTT GATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCCTTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAAACCAAAATTAGGTGAaaaaaaaaa ] [+] EMBL AU031363 [ AAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATC ACTC ACCACCCTCATAGGAACTTGGATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTANCTTATATTATATAGCATTAGTAGGTANCA ] consensusID : consensus_9066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 690 fasta sequence [ACAAGGGGGGTTTAGGCCCTCAATCATGCTTCTTACCTTATGGTGGTGCGCCATTTCCAGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGACAGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTCACCAAAAGGAGAATGGATATATTGTGTAGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCACTCACCACCCTCATAGGAACCTGATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGNATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGANGAAACAAAATTAGGTGAGGTGAGCATGATTNCTTTTGTCGCAAAAAA] [+] EMBL CA766841 [ACAAGGGGGGTTTAGGCCCTCAATCATGCTTCTTACCTTATGGTGGTGCGCCATTTCCAGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATAGTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGACAGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCGTTTCACCAAAAGGAGAATGGATATATTGTGTAGGTGAAGACATGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCACTCACCACCCTCATAGGAACCTGATTGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGNATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGANGAAACAAAATTAGGTGAGGTGAGCATGATTNCTTTTGTCGC ] [+] EMBL AU095335 [ TAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATNNAGGAAACAAAATTAGGTGAGGTGAGNATGATTCCTTTaaaaaaaaaaaa] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9066#0 CCCCCACTCCCCCACCTCCTCCCGTCCTCCGGCCGCCGCTCCCCACCCGCCGCCGCCGCC 60 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 GCCGCCCGCAGAAGCCGCAGATGGCGTCGTCGGCGTCCACCCTCGAGATCGAGGCCCGCG 120 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 ACGTGGTGAAGATAGTGCTGCAGTTCTGCAAGGAGAACTCGCTGCAGCAGACGTTCCAGA 180 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CGCTGCAGAACGAGTGCCAGGTCTCGCTCAACACCGTCGACAGCATCGACACCTTCATCG 240 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CCGACATCAATGCCGGGCGCTGGGACGCTGTGCTGCCCCAGGTTGCGCAGCTCAAGCTGC 300 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CGCGCAAGAAGCTCGAGGACCTGTACGAGCAGATTGTGCTCGAGATGGCTGAGCTCCGTG 360 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 AGCTGGACACGGCGCGCGCCATCCTCCGCCAGACCCAGGTCATGGGCGTCATGAAGCAGG 420 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 AGCAGCCCGAGCGGTACCTCAGGCTTGAGCATCTCCTTGTCCGGACATACTTTGACCCCA 480 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 ATGAGGCCTACCAAGAATCCACCAAGGAGAAACGACGTGCACAGATTTCCCAAGCTATTG 540 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CTTCTGAAGTTTCAGTAGTTCCACCTTCTCGGTTAATGGCACTGATTGGTCAGGCTTTGA 600 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 AATGGCAACAGCACCAAGGATTGTTACCACCTGGCACACAGTTTGATTTATTTAGAGGAA 660 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CTGCTGCAATGAAGCAAGATGAAGAGGAAACATATCCTACTACTTTATCACATCAAACAA 720 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 AGTTCGGGAAGAAAACTCACCCTGAATGTGCTCGATTTTCACCTGATGGCCAGTACCTTG 780 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 TATCATGCTCAGTGGATGGAATCATTGAGGTTTGGGATTATATCAGCGGGAAGCTTAAAA 840 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 AGGATCTTCAATATCAAGCTGACGAAAGCTTCATGATGCACGATGATGCGGTGCTTTCTG 900 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 TTGATTTCAGTAGAGATTCTGAGATGCTGGCATCTGGATCACAGGATGGAAAGATTAAGG 960 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 TTTGGCGTATACGAACTGGCCAGTGTTTGCGTCGCCTCGAGCGTGCACATGCAAAAGGTG 1020 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 TTACAAGTGTTACATTCTCACGTGATGGAACTCAGATATTGAGTTCATCCTTTGACACTA 1080 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CTGCAAGAGTACATGGCCTCAAGTCCGGAAAGATGCTGAAGGAATTCCGAGGCCATAACT 1140 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 CATATGTGAATTGTGCCATCTTTTCTACAGATGGTAGCCGTGTTATTACAGCTTCCAGTG 1200 consensus_9066#1 ------------------------------------------------------------ consensus_9066#0 ATTGTACTGTTAAGGTGTGGGATACGAAAACAACAGATTGTTTGCAAACATTCAAGCCAC 1260 consensus_9066#1 ------------ACAAGGGGGGTTTAGGCCCTCAATCATGCTTCTTACC--TTATGGTGG 46 * * *** * * * ** ** * * * * * consensus_9066#0 CACCTCCTTTGAGGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATA 1320 consensus_9066#1 TGCGCCATTTCCAGGGAGGAGATGCAACTGTTAACTCTGTCCATTTATCTCCAAAGAATA 106 * * *** *********************************************** consensus_9066#0 GTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGAC 1380 consensus_9066#1 GTGATCACATTATTGTGTGCAATAAGACATCTTCAATATACATAATGACTCTACAAGGAC 166 ************************************************************ consensus_9066#0 AGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCG 1440 consensus_9066#1 AGGTTGTAAAAAGTTTTTCATCTGGTAAACGGGAAGGGGGAGATTTCCTTGCAGCTTCCG 226 ************************************************************ consensus_9066#0 TTTCACCAAAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTA 1500 consensus_9066#1 TTTCACCAAAAGGAGAATGGATATATTGTGTAGGTGAAGACATGAACATGTATTGCTTTA 286 ******************************* **************************** consensus_9066#0 GCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCA 1560 consensus_9066#1 GCTACCAGTCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCA 346 ************************************************************ consensus_9066#0 TCACTCACCACCCTCATAGGAACTTGATTGCTACTTATGCTGAAGATTGCACGATGAAAA 1620 consensus_9066#1 TCACTCACCACCCTCATAGGAACCTGATTGCTACTTATGCTGAAGATTGCACGATGAAAA 406 *********************** ************************************ consensus_9066#0 CATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCA 1680 consensus_9066#1 CATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAATTGTAGGAAGCA 466 ************************************************************ consensus_9066#0 TGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATT 1740 consensus_9066#1 TGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATT 526 ************************************************************ consensus_9066#0 TAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCC 1800 consensus_9066#1 TAGAGAACTGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCC 586 ************************************************************ consensus_9066#0 AGTGTATTCCCATTGTATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGAGGAA 1860 consensus_9066#1 AGTGTATTCCCATTGNATCTTATATTATATAGCATTAGTAGGTATCATTGTATGGANGAA 646 *************** **************************************** *** consensus_9066#0 ACAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGACTCTTGCTTTTATTGGAGC 1920 consensus_9066#1 ACAAAATTAGGTGAGGTGAGCATGATTNCTTTTGTCGCAAAAAA---------------- 690 *************************** ********** * consensus_9066#0 GCTGAAAATCTGAAATACTGAATGCAATTAC 1951 consensus_9066#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||