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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 906 fasta sequence
[TGACTGGACTGAAGGAGTAGAAAAACAACTCAGTCCCTAACGCCGCCGCCAATCTCGCCGCCTCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC-AGCATCAACTATGTGCTCATTG-CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGAGGTGGCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCAAAAAAAAAAAAAAAAACAGGCTATTATTTATTGGCTGATAATAACACTCAATTTCCCTCAAAAAAAAAA]
[+] EMBL CF332691 [TGACTGGACTGAAGGAGTAGAAAAACAACTCAGTCCCTAACGCCGCCGCCAATCTCGCCGCCTCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC AGCATCAACTATGTGCTCATTG CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTA ]
[+] EMBL AU101623 [ TCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC AGCATCAACTATGTGCTCATTG CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGANGTGGCGGTGGGGGCAGTAACTACTTNGGC ]
[+] EMBL AK121615 [ CGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCGCTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCACGCCTTGAGGTTATTTTCTGCCAATGCC AGCATCAACTATGTGCTCATTG CCACAAACTGTCGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGAGGTGGCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGT ]
[+] EMBL AU101624 [ GGTTATTTTCTGCCAATGCCAAGCATCAACTATGTGCTCATTGCCCNCAAACTGTCGTTNCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATGTTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGNAGGTGGCGNAGGTGNCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCAAAAAAAAAAAAAAAAA ]
[-] EMBL CF332692 [ TATCATTTTCAAGGAAGGTGCCCACTAAACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATCTGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGATGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGAAGGTGCCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTATGGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGAAGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCACCAGAAATTACATATTCAGGCTATTATTTATTGGCTGATAATAACACTCAATTTCCCTCAAAAAAAAAA]
consensusID : consensus_9081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[TGCTTTTGCAAAGGCATCGTATAGGAGATGAGGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTTTACAAGAAATTTCCGTTATTTGCACCAGAAATTACAGTATTCAGGCTATTATTTATTGGCTGATAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGCGGG]
[-] EMBL BI306753 [TGCTTTTGCAAAGGCATCGTATAGGAGATGAGGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAAATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGTTACATCAGAGATCAGACTAGCTTCCATTAACTTTACAAGAAATTTCCGTTATTTGCACCAGAAATTACAGTATTCAGGCTATTATTTATTGGCTGATAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9081#0 TGACTGGACTGAAGGAGTAGAAAAACAACTCAGTCCCTAACGCCGCCGCCAATCTCGCCG 60
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 CCTCCGCCCTGAGCCCCGGCAGCTTTGTTTTGGCCTCTCCGTCGCCGGCGGCCATCCTCG 120
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 CTTCTTGGCAGCTCGCGCGACGCGCCGGACCAGCCGACTCGTCCTCCCTCCAGGTTCCAC 180
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 GCCTTGAGGTTATTTTCTGCCAATGCCAGCATCAACTATGTGCTCATTGCCACAAACTGT 240
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 CGTTGCCTCTGCTGCAACCGCGCAATTCACAGAAAGATGCAATGACTTGCCTATGCCATG 300
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 TTCACAAATTCTGAGGGCTAAAGTCAATTCCCTATCATTTTCAAGGAAGGTGCCCACTAA 360
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 ACCAACATTGCATAATTTAAGATGCCATGCGACTCAAACCCAAAGCACACAACGGAAATC 420
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 TGCGACTGCAACCATCCAACGCTCTGATCCCAAAGGGAAACTTAAAGGTCCTAAACTTGA 480
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 TGATGGAAGTGGAGGCTTCCCACCATTCCGCTTTGGTAAAGGCGGTGGAGGTGGCGGAGG 540
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 TGGCGGTGGGGGCAGTAACTACTTCGGCGGGTTCCTCCTGTTCACCTGCGTTTTGCTTAT 600
consensus_9081#1 ------------------------------------------------------------
consensus_9081#0 GGATTACTTGAAGGAATTCGAGAAGAACTTGCTTTTGCAAAGGCATCGTATAGGAGATGA 660
consensus_9081#1 -----------------------------TGCTTTTGCAAAGGCATCGTATAGGAGATGA 31
*******************************
consensus_9081#0 AGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAA 720
consensus_9081#1 GGCAACCCTTGGCCTTGCACAATAATTTTCGTCATCATTAGTTGCTGGTGTTTGATGTAA 91
***********************************************************
consensus_9081#0 ATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGT 780
consensus_9081#1 ATTACTTGATCAATTGCTGATGGTTGCCATCAAGCATGTTCGTGATTCACCATGTGTTGT 151
************************************************************
consensus_9081#0 TACATCAGAGATCAGACTAGCTTCCATTAACTCTACAAGAAATTGCCGTTATCTGCAAAA 840
consensus_9081#1 TACATCAGAGATCAGACTAGCTTCCATTAACTTTACAAGAAATTTCCGTTATTTGCACCA 211
******************************** *********** ******* **** *
consensus_9081#0 AAAAAAAAAAAAA-CAGGCTATTATTTATTGGCTGATAATAACACTCAATTTCCCTCAAA 899
consensus_9081#1 GAAATTACAGTATTCAGGCTATTATTTATTGGCTGATAAAAAGGGGGGGGGGGGGGGGGG 271
*** * * * ************************* **
consensus_9081#0 AAAAAAA---- 906
consensus_9081#1 GGGGGGGCGGG 282
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||