These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence [TTTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGNCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCTAGTTCACCTATATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGATGATGCTGAGGATTGTCAGCAACAGCGCAACAAAATTTGAGCAATGGTTAGGGAACAAAATATGAGCTGCTAGTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTGTGTTCAAGACAATCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCCTGGCCTTCAATAATGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTGGGGTGTAGTGTAGCACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGACTACAGAGAGATCCGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTATTATGTGAGCCCACC] [-] EMBL AU031490 [TTTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGNCCTCTCAACTTGTAACTTGCAC ] [+] EMBL CB675782 [ GAGACATCATCCCCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCTAGTTCACCTATATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGATGATGCTGAGGATTGTCAGCAACAGCGCAACAAAATTTGAGCAATGGTTAGGGAACAAAATATGAGCTGCTAGTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTGTGTTCAAGACAATCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCCTGGCCTTCAATAATGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTGGGGTGTAGTGTAGCACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGACTACAGAGAGATCCGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTATTATGTGAGCCCACC] consensusID : consensus_9082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCCGGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGACGTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCGCTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTCTGAGACAACACGACCTGTTTATTAGCTCGATTTGATTCTATTCCATCGCCACCCCAGGGACACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCTGCAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCCGGCCAGCTGCAAAAAAAAAAAGATCCCCACGGCAGGCGACCCCCTGCCGAAAAGATGCCCTATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGCTTTTTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGGTTAATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT] [+] EMBL CB675781 [GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCCGGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGACGTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCGCTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTCTGAGACAACACGACCTGTTTATTAGCTCGATTTGATTCTATTCCATCGCCACCCCAGGGACACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCTGCAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCCGGCCAGCTGCAAAAAAAAAAAGATCCCCACGGCAGGCGACCCCCTGCCGAAAAGATGCCCTATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGCTTTTTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGGTTAATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT] consensusID : consensus_9082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 533 fasta sequence [ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGCCTAGCTCCCATCGATGAC] [-] EMBL AK121666 [ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATCATCAGCTTGACAGGGCAAATACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGCCTAGCTCCCATCGATGAC] [-] EMBL AU162366 [ GTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGCCAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACCATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCTCTCCACCCCACGTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGCCGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGTCTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACATCGAGC ] consensusID : consensus_9082#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGCCAA] [-] EMBL CA757464 [GTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTACCTGCAAAAATACTTTACATAGCATGTACAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCATGCGGTAACAAACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9082#0 -----------------------------------------------------------T 1 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 ------------------------------------------------------------ consensus_9082#1 GACCGGCGGCGAGCTGCCAGCTGGGGATGCGCCCTCTCTGCTGCCGGAGAATCTGGATCC 60 consensus_9082#0 TTTTGACTAACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATC 61 consensus_9082#3 -------------------------------------------------GTCTCGAGTTT 11 consensus_9082#2 ---------ACGGTGTTGTATTGAAAAGTATTGATTGTTCACATTGACAACTGAGACATC 51 consensus_9082#1 GGCCGGCATCGGCGACGGCGACGGCGAGGGCCGGGCGGCCAGATCGACGGCGCCGTCGAC 120 * consensus_9082#0 ATCAGCTTGACAGGGCAAATACC-TGCAAAAATACTT-------TACATAGC---ATGTA 110 consensus_9082#3 TTTTTTTTTTTTTTTTTTTTACC-TGCAAAAATACTT-------TACATAGC---ATGTA 60 consensus_9082#2 ATCAGCTTGACAGGGCAAATACC-TGCAAAAATACTT-------TACATAGC---ATGTA 100 consensus_9082#1 GTGGGGTGGAGAGCAGGTACGCCACGCAGCTCTACTCCTAGCCCTAGGTCGCTCTGCGCG 180 * * ** *** **** ** * ** * consensus_9082#0 CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA 170 consensus_9082#3 CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA 120 consensus_9082#2 CAAATCTTGTGCCGAAGCAAAGTTTTTGGACAAAAGAACATTTTGAGATAGTTTGCTCCA 160 consensus_9082#1 CTGTTCTTTGGCTCCGACTGAATCCATCCGGTAATAAGTTTTGTACCATATCGCCCATTC 240 * **** ** * * * * ** * ** * *** * consensus_9082#0 TGCGGTAACA-AACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGC 229 consensus_9082#3 TGCGGTAACA-AACGAGCATGTAAAAGCAAATAAGATTATTTTTTATTTCTTCAGCCAGC 179 consensus_9082#2 TGCGGTAACA-AACGAGCATGTAAAAGCAAATAAGATTATTTTTTGTTTCTTCAGCCAGC 219 consensus_9082#1 TGAGACAACACGACCTGTTTATTAGCTCGATTT-GATTCTATTCCATCGCCACCCCAGGG 299 ** * **** ** * * * * * * * **** * ** * * * * * consensus_9082#0 CAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACC 289 consensus_9082#3 CAA--------------------------------------------------------- 182 consensus_9082#2 CAAAGTTCCTAGCAGATCAAGCCTCCACATGCAATGGTGAGGTGACATGCATCTGTAACC 279 consensus_9082#1 ACACTCACCCCGACTGCAATGGGCAGCGGTAGGGCGTGTATCCGCCCTACCGTTTCAGCT 359 * consensus_9082#0 ATGGNCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGCATATGTAAATGACCT 349 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 ATGGCCCTCTCAACTTGTAACTTGCACTTCAAATGGTACCCCTGC-TCTCCACCCCAC-- 336 consensus_9082#1 GCAAAAAAAAAAAGGCAGTGAAAAGATCCCCTACTGGGGCACGGCAGGCGACCCCCTGCC 419 consensus_9082#0 AGTTCACCTATATTTCCATGAAAAAACATAAGGATAGCAAACCTGTGTCACAATCCAGAT 409 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 -GTCGACGGCGCCGTCGATCTGGCCGCCCGGCCCTCGCCGTCGCCGTCGCCGATGCCGGC 395 consensus_9082#1 GGCCAGCTGCAAAAAAAAAAAGAT--CCCCACGGCAGGCGACCCCCTGCCGAAAAGATGC 477 consensus_9082#0 GATGCTGAGGATTGTCAGCAACAGCGCAA-CAAAATTTGAGCAATGGTTAGGGAACAAAA 468 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 CGGATCCAGATTCTCCGGCAGCAGAGAGGGCGCATCCCCAGCTGGCAGCTCGCCGCCGGT 455 consensus_9082#1 CCTATAGAGGCACACAGTCGGGTCTCTCGGTGGAGGCAGCGCTAGACACTAGCGCTTGGC 537 consensus_9082#0 TATGAGCTGCTAGTAGATTTGAAAAGACTAGATAGATTCATAAAGTTTTAAGCAGTTCTG 528 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 CTTCGGGAAGCGGCGGCGTCGGGGAGAGTGGAGAGAGTCGGGAAGGAGGAGACA------ 509 consensus_9082#1 TTTTTGAAATTTGTAACATTAGATTTTTTTTTCTATGTTGAACTCATTGCTACTCATGGG 597 consensus_9082#0 TGT-TCAAGACAATCTGCTACCGGTAGCTATATATCTCTGGTTTCACTAAAGCTGGAGCC 587 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 ----TCGAGCCTAGCTCCCATCGATGAC-------------------------------- 533 consensus_9082#1 TTAATCGAACCAATTGCAATTTGACCATTCCATCCTTTGGATGCATAGTTCGAT------ 651 consensus_9082#0 TGGCCTTCAATAATGCACTACAATTTCACTTGACTTTAGCAATAGAAACATTCCTGCTTG 647 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 ------------------------------------------------------------ consensus_9082#1 ------------------------------------------------------------ consensus_9082#0 GGGTGTAGTGTAGCACATCGCAGTTGCGCCAATATTTACTCCAACTGCCATGGTCTTTGA 707 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 ------------------------------------------------------------ consensus_9082#1 ------------------------------------------------------------ consensus_9082#0 CTACAGAGAGATCCGGAAAGTGCTTTTTAATATTAAAACCACTTTTTGAAAAAATAATTA 767 consensus_9082#3 ------------------------------------------------------------ consensus_9082#2 ------------------------------------------------------------ consensus_9082#1 ------------------------------------------------------------ consensus_9082#0 TTATGTGAGCCCACC 782 consensus_9082#3 --------------- consensus_9082#2 --------------- consensus_9082#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||