These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1258 fasta sequence [GTTTCTTCCATTCTTGCTACAGAAAAATAAGTTCTTGCCGGCCCAACTCAACACCCGCTGCTCGATCCCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT-GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATTTAGCCCCCATTTTTACTTTGGAAGAAATAAAGTTTTTTTTTTGAAACTGAGAAATTGATAGTGGTAGGAGATAGTAGTCCGTGGCCTGTAACCGTTCAGATTTTTACATGGGCCCACGACCATACTGGGAATCAGAAAATTAGCCCCCGGGGGTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAATAAAAG] [+] EMBL AK070445 [GTTTCTTCCATTCTTGCTACAGAAAAATAAGTTCTTGCCGGCCCAACTCAACACCCGCTGCTCGATCCCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCAGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATT ] [+] EMBL AK121743 [ CCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGAGACGAACAGGCGAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATT ] [+] EMBL CA754896 [ TTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCANATGATGCAGCCCTTTTGGGACGAACAGGCCAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAGAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTGTGGGAGAAGAAGCTAGGAGGCTCCCTGAAAGGACAAACGAAATG ] [+] EMBL AK060164 [ GACTCGATAGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCTGCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCACGATCACTCTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGAGCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTTCCCTCACCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATTAAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATT ] [-] EMBL CB635414 [ TAATCACTCCCCCTCCTATTGATGAAGATGGAAGGGAAAGATTTGCCCGATCCCTTTAT GGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAAACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTTGCCAGAGAAATGAATATACACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTTCTTGAGCGATGGACTGCCCCTGACGCCAGAAGGAAATGCTGTTGTCCCCAAGGAAGTTGTCCAAACGTTGAGAAGTGTGGGTTTGAAAGCAGAAGAAATGCCATATGATTTCCCTCCCCATTCCAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGCTTGTGGTGGGGTTCATTTGCAGATTTTTTTTCCTCTTTGAATTAGGGGAAAGATCAAATTAAAGACAATGTTTTTCTGCTTTTGTCATGAGCTTTTGGAGTGAGGAATTTAGCCCCCATTTTTACTTTGGAAGAAATAAAGTTTTTTTTTTGAAACTGAGAAATTGATAGTGGTAGGAGATAGTAGTCCGTGGCCTGTAACCGTTCAGATTTTTACATGGGCCCACGACCATACTGGGAATCAGAAAATTAGCCCCCGGGGGTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAATAAAAG] consensusID : consensus_9086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGCGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCTGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGCAAGTTCTTTTCATTGGTCCTCCTGCTCTTGATTACTTCAGTTTCCTGTGGTGTTTGTTTTCATCTGCTGGCAATGTTTTTCAATGTACAGAATGTAAATGTTAAATTCTGATGATCTGGAACTTACAATGCTGTAAGAAATTGGTATGCAAGTAAAAGTTTTGCTATCTTGATGATAGCCATGATGCCTTGTTCATGAGAAGTGAGATCACTAGTTTTATGTTGTCGAACAAATACATGTGTCTGGGTAGATTAGATAGCTTACTTCTGTTTGCAAAACAATGAGGATGAATTGGATTCTCAAGGTTCTTCTCCTCATGATGAGCTCTGAGAAAACAATTATGCTTTATCCCTGATGTGTCTTTTCCATAGATACATTGGCACTTCTATATTACCGTAGTGCTATAGCAAATTTGCCTTT] [+] EMBL CB635413 [GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGCTGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCGCCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAAGATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGCGCCTCCTCTTGCGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGACAGCATGTTCCTGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGGCAAGTTCTTTTCATTGGTCCTCCTGCTCTTGATTACTTCAGTTTCCTGTGGTGTTTGTTTTCATCTGCTGGCAATGTTTTTCAATGTACAGAATGTAAATGTTAAATTCTGATGATCTGGAACTTACAATGCTGTAAGAAATTGGTATGCAAGTAAAAGTTTTGCTATCTTGATGATAGCCATGATGCCTTGTTCATGAGAAGTGAGATCACTAGTTTTATGTTGTCGAACAAATACATGTGTCTGGGTAGATTAGATAGCTTACTTCTGTTTGCAAAACAATGAGGATGAATTGGATTCTCAAGGTTCTTCTCCTCATGATGAGCTCTGAGAAAACAATTATGCTTTATCCCTGATGTGTCTTTTCCATAGATACATTGGCACTTCTATATTACCGTAGTGCTATAGCAAATTTGCCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9086#0 GTTTCTTCCATTCTTGCTACAGAAAAATAAGTTCTTGCCGGCCCAACTCAACACCCGCTG 60 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 CTCGATCCCGATCAGCCACGCTTCCTCTTCCGCCGCCGCCGCCGAAGAGGGGGACTCGAT 120 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 AGACCATGACGACACCCGGATCCTGCCCCTCGTCCACATCCGCCGCCCACTCTCCCGTCT 180 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGC 240 consensus_9086#1 GCCTCGCCCCCTCCGCCGCCGCAGGGGAATCCCAAGAGATGGTGCGGCCGCGCATGGTGC 60 ************************************************************ consensus_9086#0 TGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCG 300 consensus_9086#1 TGTTCGGCGACTCCATCACGGAGCAGTCCTTCCGCCCCGGCGGCTGGGGCGCCGCCCTCG 120 ************************************************************ consensus_9086#0 CCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAA 360 consensus_9086#1 CCGACACCTACTCCCGCAAGGCTGATGTAGTTGTTAGAGGCTACGGAGGGTACAACACAA 180 ************************************************************ consensus_9086#0 GATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGTGCCTCCTCTTG 420 consensus_9086#1 GATGGGCTCTATTCTTGCTACATCAAATCTTTCCCCTGGTTGGAATAGCGCCTCCTCTTG 240 ************************************************ *********** consensus_9086#0 CGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGAC 480 consensus_9086#1 CGACAACTGTATTCTTCGGTGCAAATGATGCAGCCCTTTTGGGACGAACAGGCGAGCGAC 300 ************************************************************ consensus_9086#0 AGCATGTTCCCGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGG 540 consensus_9086#1 AGCATGTTCCTGTTGCAGAGTATAAAGAAAATCTCAAAAAGATTGTTAATCATTTGAAGG 360 ********** ************************************************* consensus_9086#0 ATTGTTCCAAGTCCATGTTAATTGTACTAATCACTCCGCCTCCTATTGATGAAGATGGAA 600 consensus_9086#1 -------CAAGTTCTTTTC----------ATTGGTCCTCCTGCTCTTGATTACTTCAGTT 403 ***** * * * ** *** *** ** ***** * * consensus_9086#0 GGGAAAGATTTGCACGATCACTCTATGGAGAAGAAGCTAGGAAGCTCCCTGAAAGGACAA 660 consensus_9086#1 TCCTGTGGTGTTTGTTTTCATCTGCTGGCAATGTTTTTC---AATGTACAGAATGTAAAT 460 * * * *** *** * * * * * *** * * * consensus_9086#0 ACGAAATGGCTGGTGTGTATGCAAGTCAGTGCATAGAGCTAGCCAGAGAAATGAATATAC 720 consensus_9086#1 GTTAAATT-CTGATG-ATCTGGAACTT-----ACAATGCTGT---AAGAAATTGGTATGC 510 **** *** ** * ** ** * * * *** ****** *** * consensus_9086#0 ACTGCATTGATATTTGGTCAAAGATGCAAGAGACCGCAGGATGGCAGAAACTTTACTTGA 780 consensus_9086#1 AA---GTAAAAGTTTTGCTATCTTGATGATAG---CCATGATGCC-----TTGTTCATGA 559 * * * *** * * * ** ** **** * * * * *** consensus_9086#0 GCGATGGACTGCACCTGACGCCAGAAGGAAATGCTGTTGTCCACAAGGAAGT-TGTCCAA 839 consensus_9086#1 GAAGTGAGAT-CACTAGTTTT---------ATGTTGTCGAACAAATACATGTGTCTGGGT 609 * ** * *** * *** *** * ** * * ** * * consensus_9086#0 ACGTTGAGAAGTGTGGGTCTGAAAGCAGAAGAAATGCCATATGATTT-CCCTCACCATTC 898 consensus_9086#1 AGATTAGATAGCTTACTTCTGTTTGCAAAACAATGAGGATGAATTGGATTCTCAAGGTTC 669 * ** ** * **** *** ** ** ** * **** *** consensus_9086#0 CAGAATTGATGGTAGTTGCCCAGAAAAAGCCTTCCAGTGAAGTGTGATGCCTTGAATAGC 958 consensus_9086#1 TTCTCCTCATGATGAGCTCTGAGAAAA-------CAATTATGCTTTATCCCTGATGTGTC 722 * *** * * ****** ** * * * * ** *** * * consensus_9086#0 TTGTGGTGCGGTTCATCTGGAGATCTCTTTTCCTCTTTGAATTAGGAGAAAGATCAAATT 1018 consensus_9086#1 TTTTCCATAGATACATTGGCACTTCTATATTAC-CGTAGTGCTATAGCAAATTTGCCTTT 781 ** * * * *** * * *** * ** * * * * ** *** * ** consensus_9086#0 AAAGACAATGTTTTACTGCTTCTATCATGAGCTTTTGGAGTGAGGAATTTAGCCCCCATT 1078 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 TTTACTTTGGAAGAAATAAAGTTTTTTTTTTGAAACTGAGAAATTGATAGTGGTAGGAGA 1138 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 TAGTAGTCCGTGGCCTGTAACCGTTCAGATTTTTACATGGGCCCACGACCATACTGGGAA 1198 consensus_9086#1 ------------------------------------------------------------ consensus_9086#0 TCAGAAAATTAGCCCCCGGGGGTTATTTGGAAAAAAAAAAAAAAAAAAAAAAAATAAAAG 1258 consensus_9086#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||