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Oryza sativa
cluster # 9087 cluster # 9087       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9087#0 length = 2117 sequences # 2  
consensus_9087#1 length = 1564 sequences # 4  

consensusID : consensus_9087#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2117
fasta sequence
                              [TCCTCCCCGCGATTCCCGTGTGAATTTGCTCTTTCTTCCCGGATTTTTCGACTTTCTTCTTCTTCTTGGTTTGCTCTTCTTCTTTCTTGGCGGTCTGCACCCATTCGGAGTCCGAGCTCATCTCCGAGTCCATGGCGCCTCTCGCCTTCGATGGCTGGAACTGAAATACTAGGCATTAGCGCCACTTATCTTGCTTCGATTTGGTAAATTTTGCTCGATTCCTTCATCGTGGAGTTGTGCTGTTCTTCGTACTGGAGGTGTGTCCTTTTTAATGATTGCTAATATTCTTGGAAAGCAGGCACGCCTGCCATTGCTGAACTCGATGTTTTCTCATCGATTGGTCGGGATATTGCCGTTGATAGATTCCCCTGCAGTGCTCCTTTTCGTCTCTTCCATTCTCCTCTCAAATTCGCCTTGACATTTTGGTCGGCACTGTACTTTTGTGGTGGTGGCCACTGGCCAACAATGTTCAGGCCTGGAACGATCGCCTGTGTGGCTAATTCGGCGCGCATTTTGCTGAAAAGTTTGCGGGCTTTTATCCTGTTTGCTGCTCTACCGGGTCACTGCTCTGCCAGTTTTGTCTCAATTTCTGTGATGCTTTCTGTGCCATAGCTTTCAAATGTTGGCTTTGGTAAGGAGGGGATTGAGATAGGTTGGGTTATCTGAGTGCACACTTCACTAAAAAGTTTGGATCCTTTTGTCCATTCTGCTGTGATTCCGTCGGAATTTGGCAATTTTCGCATCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGCGAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGCATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCATCAACACTGGAACCTTGGTGAAGAATTCAGTTGCTCTCGCACAGCCTATTTCATTTAATCCTGCACAAAGTGCTTCGATAGTTGATGAACCAGCTCCTGCAGTTAGGTCTGTTTCGATGAGAGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCCTATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAATCAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAATACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGTAGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCTTGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGG--CAAGGCAGAGGCGAGGAGGGAGGCCGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTTTTGTCCAAAAAAAAAAAAA]

[+] EMBL AK102865             [TCCTCCCCGCGATTCCCGTGTGAATTTGCTCTTTCTTCCCGGATTTTTCGACTTTCTTCTTCTTCTTGGTTTGCTCTTCTTCTTTCTTGGCGGTCTGCACCCATTCGGAGTCCGAGCTCATCTCCGAGTCCATGGCGCCTCTCGCCTTCGATGGCTGGAACTGAAATACTAGGCATTAGCGCCACTTATCTTGCTTCGATTTGGTAAATTTTGCTCGATTCCTTCATCGTGGAGTTGTGCTGTTCTTCGTACTGGAGGTGTGTCCTTTTTAATGATTGCTAATATTCTTGGAAAGCAGGCACGCCTGCCATTGCTGAACTCGATGTTTTCTCATCGATTGGTCGGGATATTGCCGTTGATAGATTCCCCTGCAGTGCTCCTTTTCGTCTCTTCCATTCTCCTCTCAAATTCGCCTTGACATTTTGGTCGGCACTGTACTTTTGTGGTGGTGGCCACTGGCCAACAATGTTCAGGCCTGGAACGATCGCCTGTGTGGCTAATTCGGCGCGCATTTTGCTGAAAAGTTTGCGGGCTTTTATCCTGTTTGCTGCTCTACCGGGTCACTGCTCTGCCAGTTTTGTCTCAATTTCTGTGATGCTTTCTGTGCCATAGCTTTCAAATGTTGGCTTTGGTAAGGAGGGGATTGAGATAGGTTGGGTTATCTGAGTGCACACTTCACTAAAAAGTTTGGATCCTTTTGTCCATTCTGCTGTGATTCCGTCGGAATTTGGCAATTTTCGCATCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGCGAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGCATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCATCAACACTGGAACCTTGGTGAAGAATTCAGTTGCTCTCGCACAGCCTATTTCATTTAATCCTGCACAAAGTGCTTCGATAGTTGATGAACCAGCTCCTGCAGTTAGGTCTGTTTCGATGAGAGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCCTATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAATCAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAATACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGTAGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCTTGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGG  CAAGGCAGAGGCGAGGAGGGAGGCCGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCC                       ]
[+] EMBL C97475               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATTGAAGCTGAAATGAAGAGGNTGGAGGCAAAGATAGNGATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGNCGAGGAGGGAGGCCGCTGAGTCCAGGAAGAACCAAGAAGCANCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTTTTGTCCAAAAAAAAAAAAA]


>consensus_9087#0 TCCTCCCCGCGATTCCCGTGTGAATTTGCTCTTTCTTCCCGGATTTTTCGACTTTCTTCT TCTTCTTGGTTTGCTCTTCTTCTTTCTTGGCGGTCTGCACCCATTCGGAGTCCGAGCTCA TCTCCGAGTCCATGGCGCCTCTCGCCTTCGATGGCTGGAACTGAAATACTAGGCATTAGC GCCACTTATCTTGCTTCGATTTGGTAAATTTTGCTCGATTCCTTCATCGTGGAGTTGTGC TGTTCTTCGTACTGGAGGTGTGTCCTTTTTAATGATTGCTAATATTCTTGGAAAGCAGGC ACGCCTGCCATTGCTGAACTCGATGTTTTCTCATCGATTGGTCGGGATATTGCCGTTGAT AGATTCCCCTGCAGTGCTCCTTTTCGTCTCTTCCATTCTCCTCTCAAATTCGCCTTGACA TTTTGGTCGGCACTGTACTTTTGTGGTGGTGGCCACTGGCCAACAATGTTCAGGCCTGGA ACGATCGCCTGTGTGGCTAATTCGGCGCGCATTTTGCTGAAAAGTTTGCGGGCTTTTATC CTGTTTGCTGCTCTACCGGGTCACTGCTCTGCCAGTTTTGTCTCAATTTCTGTGATGCTT TCTGTGCCATAGCTTTCAAATGTTGGCTTTGGTAAGGAGGGGATTGAGATAGGTTGGGTT ATCTGAGTGCACACTTCACTAAAAAGTTTGGATCCTTTTGTCCATTCTGCTGTGATTCCG TCGGAATTTGGCAATTTTCGCATCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCT TCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTC CGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAA CAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAG CTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTT CTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGC GAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGC ATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCAT CAACACTGGAACCTTGGTGAAGAATTCAGTTGCTCTCGCACAGCCTATTTCATTTAATCC TGCACAAAGTGCTTCGATAGTTGATGAACCAGCTCCTGCAGTTAGGTCTGTTTCGATGAG AGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCC TATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAAT CAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAA TACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATG GGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGT AGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCT TGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAA AATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCA GGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCAAGGCAGAGGCGAGGAGGGAGGCCG CTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGA AAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTC TGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTA AAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTTTT GTCCAAAAAAAAAAAAA



consensusID : consensus_9087#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1564
fasta sequence
                              [CACTATAATACGGTACAAATAGATCATATATACACTAGCATAGCACGAAATCGCAAAGTCCACTAACATCCCACTCCCCCTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCCACGCCATCTCGCCACCACCAACCGATTCAGGCCGCGCACGCCATTAATGGAGTACGAGCGCATCCACGGCCCCCCGCTCCAACGTCAGTCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGCGAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGCATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCATCAACACTGGAACCTTGGTGAAGAATTCAGTTGCTC-TCGCACAGCCTATTTCATTT-AATCCTGCACAAAGTGCTTCGATAGTTG-ATGAACCAGC-TCCTGCAGTTAGGTCTGTTTCGATGAGAGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCCTATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAATCAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAATACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGTAGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCTTGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGGCGAGGAGGGAGGCCGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTT]

[+] EMBL AK121787             [CACTATAATACGGTACAAATAGATCATATATACACTAGCATAGCACGAAATCGCAAAGTCCACTAACATCCCACTCCCCCTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCCACGCCATCTCGCCACCACCAACCGATTCAGGCCGCGCACGCCATTAATGGAGTACGAGCGCATCCACGGCCCCCCGCTCCAACGTCAGTCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGCGAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGCATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCATCAACACTGGAACCTTGGTGAAGAATTCAGTTGCTC TCGCACAGCCTATTTCATTT AATCCTGCACAAAGTGCTTCGATAGTTG ATGAACCAGC TCCTGCAGTTAGGTCTGTTTCGATGAGAGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCCTATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAATCAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAATACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGTAGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCTTGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGGCGAGGAGGGAGGCCGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCC    ]
[+] EMBL AK058771             [                                                                         CTCCCCCTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCCACGCCATCTCGCCACCACCAACCGATTCAGGCCGCGCACGCCATTAATGGAGTACGAGCGCATCCACGGCCCCCCGCTCCAACGTCAGTCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGGGGCCAACGATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGCGAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGCATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCATCAACACTGGAACCTTGGTGAAGAATTCAGTTGCTC TCGCACAGCCTATTTCATTT AATCCTGCACAAAGTGCTTCGATAGTTG ATGAACCAGC TCCTGCAGTTAGGTCTGTTTCGATGAGAGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCCTATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAATCAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAATACAAGAAAGGAAATCATGGATCTTGGCCGACGGCTGGGAAAGACAACTATAGCTGCATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGTAGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCTTGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGGCGAGGAGGGAGGCCGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAGGAGCAGGCGGCTCAGATCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTT]
[+] EMBL AU161205             [                                                                               CTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCCACGCCATCTCGCCACCACCAACCGATTCAGGCCGCGCACGCCATTAATGGAGTACGAGCGCATCCACGGCCCCCCGCTCCAACGTCAGTCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGCGAACCGCGGTGGCCGTGTGGGGAGTGCA CTGGGG TNCGCCGAAGAAATCGGCGCTGGCATTTCCTGAACATGTAAGCCCGGCTCCAGCCGTTG TAAGGTGGTTG TGANGNCCCCATCAACACTGGAA CTTGGTGAAGAATTCAGTTGCTCTTCGCACAAGCTATTTCATTTAAANCCTGCACAAAGTGCTTCGATAATTGNTTGAACCAACTTCCTGCAGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS11490A            [                                                                               CTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCCACGCCATCTCGCCACCACCAACCGATTCAGGCCGCGCACGCCATTAATGGAGTACGAGCGCATCCACGGCCCCCCGCTCCAACGTCAGTCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTNCGGCGAGCTGGACGACCAGAGGAGCATNGAGTGCTCCANCTTCACCGAAATGTCGAGCAACAGTTGNCACAGATCAAGAAACCGAGCTNAGGACGACGACAGTTTNGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_9087#1 CACTATAATACGGTACAAATAGATCATATATACACTAGCATAGCACGAAATCGCAAAGTC CACTAACATCCCACTCCCCCTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCCAC GCCATCTCGCCACCACCAACCGATTCAGGCCGCGCACGCCATTAATGGAGTACGAGCGCA TCCACGGCCCCCCGCTCCAACGTCAGTCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAA TGCTTCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACG ATTCCGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGA GCAACAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGA GCAGCTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCAC CGTTCTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCA CGGCGAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGC TGGCATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCC CCATCAACACTGGAACCTTGGTGAAGAATTCAGTTGCTCTCGCACAGCCTATTTCATTTA ATCCTGCACAAAGTGCTTCGATAGTTGATGAACCAGCTCCTGCAGTTAGGTCTGTTTCGA TGAGAGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGA CTCCTATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAG AAATCAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAA TGAATACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTG CATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGG CTGTAGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAAT ATCTTGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAG CAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCG AGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGGCGAGGAGGG AGGCCGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGA TCCGGAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCT TCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGAC CATGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCC ATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9087#0      TCCTCCCCGCGATTCCCGTGTGAATTTGCTCTTTCTTCCCGGATTTTTCGACTTTCTTCT 60
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      TCTTCTTGGTTTGCTCTTCTTCTTTCTTGGCGGTCTGCACCCATTCGGAGTCCGAGCTCA 120
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      TCTCCGAGTCCATGGCGCCTCTCGCCTTCGATGGCTGGAACTGAAATACTAGGCATTAGC 180
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      GCCACTTATCTTGCTTCGATTTGGTAAATTTTGCTCGATTCCTTCATCGTGGAGTTGTGC 240
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      TGTTCTTCGTACTGGAGGTGTGTCCTTTTTAATGATTGCTAATATTCTTGGAAAGCAGGC 300
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      ACGCCTGCCATTGCTGAACTCGATGTTTTCTCATCGATTGGTCGGGATATTGCCGTTGAT 360
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      AGATTCCCCTGCAGTGCTCCTTTTCGTCTCTTCCATTCTCCTCTCAAATTCGCCTTGACA 420
consensus_9087#1      ------------------------------------------------------------
                                                                                  

consensus_9087#0      TTTTGGTCGGCACTGTACTTTTGTGGTGGTGGCCACTGGCCAACAATGTTCAGGCCTGGA 480
consensus_9087#1      -----------------------------------------CACTATAATACGGTACAAA 19
                                                                ** **  *  **     *

consensus_9087#0      ACGATCGCCTGTGTGGCTAATTCGGCGCGCATTTTGCTGAAAAGTTTGCGGGCTTTTATC 540
consensus_9087#1      TAGATCATATATACA-CTAGCATAGCACGAAATC----GCAAAGTCCACTAAC----ATC 70
                        ****   * *    ***     ** ** * *     * *****   *   *    ***

consensus_9087#0      CTGTTTGCTGCTCTACCGGGTCACTGCTCTGCCAGTTTTGTCTCAATTTCTGTGATGCTT 600
consensus_9087#1      CCACTCCCC---CTTCCAAGCTTCTTGTCTCCTCTCCTCTCCCCAACTCCC---ACGCCA 124
                      *   *  *    ** **  *   **  *** *     *   * *** * *    * **  

consensus_9087#0      TCTGTGCCATAGCTTTCAAATGTTGGCTTTGGTAAGGAGGGGATTGAGATAGGTTGGGTT 660
consensus_9087#1      TCT-CGCCACCACCAACCGATTCAGGCCGCG-----CACGCCATTAA-------TGGAGT 171
                      ***  ****   *   *  **   ***   *      * *  *** *       ***  *

consensus_9087#0      ATCTGAGTGCACACTTCACTAAAAAGTTTGGATCCTTTTGTCCATTCTGCTGTGATTCCG 720
consensus_9087#1      A--CGAGCGCA---TCCAC-----------GGCCCCCCGCTCCAA-------------CG 202
                      *   *** ***   * ***           *  **     ****              **

consensus_9087#0      TCGGAATTTGGCAATTTTCGCATCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCT 780
consensus_9087#1      TCAG------------------TCGGGTGGATTCTCCCCAGCTAAGCTACGAGCAATGCT 244
                      ** *                  **************************************

consensus_9087#0      TCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTC 840
consensus_9087#1      TCTCGGACTAGAGAAAAATCAGCACAACGGGGAGGACACATCGCCTGAGGCCAACGATTC 304
                      ************************************************************

consensus_9087#0      CGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAA 900
consensus_9087#1      CGGCGAGCTGGACGACCAGAGGAGCATGGAGTGCTCCACCTCCACCGAAATGTCGAGCAA 364
                      ************************************************************

consensus_9087#0      CAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAG 960
consensus_9087#1      CAGTGGCCACAGATCAAGAAACCGAGCTCAGGACGACGACAGCTTCGACTCCGAGAGCAG 424
                      ************************************************************

consensus_9087#0      CTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTT 1020
consensus_9087#1      CTCGTCGGGCCCGCCGACGGTGAAGAGGCCGGCGGCGGTGACCGCCTTGCTGCCACCGTT 484
                      ************************************************************

consensus_9087#0      CTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGC 1080
consensus_9087#1      CTCTAGGCCGACGCCGTCGAAGTGGGATGATGCAGAGAAGTGGATTTCTAGCCCCACGGC 544
                      ************************************************************

consensus_9087#0      GAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGC 1140
consensus_9087#1      GAACCGCGGTGGCCGTGTGGGGAGTGCAGCTGGGGCTGCGCCGAAGAAATCGGCGCTGGC 604
                      ************************************************************

consensus_9087#0      ATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCAT 1200
consensus_9087#1      ATTTCCTGAACATGTAAGCCGGCCTCCAGCCGTTGCTAAGGTGGTTGCTGAGGTCCCCAT 664
                      ************************************************************

consensus_9087#0      CAACACTGGAACCTTGGTGAAGAATTCAGTTGCTCTCGCACAGCCTATTTCATTTAATCC 1260
consensus_9087#1      CAACACTGGAACCTTGGTGAAGAATTCAGTTGCTCTCGCACAGCCTATTTCATTTAATCC 724
                      ************************************************************

consensus_9087#0      TGCACAAAGTGCTTCGATAGTTGATGAACCAGCTCCTGCAGTTAGGTCTGTTTCGATGAG 1320
consensus_9087#1      TGCACAAAGTGCTTCGATAGTTGATGAACCAGCTCCTGCAGTTAGGTCTGTTTCGATGAG 784
                      ************************************************************

consensus_9087#0      AGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCC 1380
consensus_9087#1      AGACATGGGCACAGAAATGACTCCTATTGCCAGCCAGGAGCCCTCTCGGACTGGGACTCC 844
                      ************************************************************

consensus_9087#0      TATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAAT 1440
consensus_9087#1      TATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAAT 904
                      ************************************************************

consensus_9087#0      CAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAA 1500
consensus_9087#1      CAGTATTGGTGAATTTGGTCCAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAA 964
                      ************************************************************

consensus_9087#0      TACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATG 1560
consensus_9087#1      TACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGAAAGACAACTATAGCTGCATG 1024
                      ************************************************************

consensus_9087#0      GGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGT 1620
consensus_9087#1      GGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGT 1084
                      ************************************************************

consensus_9087#0      AGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCT 1680
consensus_9087#1      AGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCT 1144
                      ************************************************************

consensus_9087#0      TGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAA 1740
consensus_9087#1      TGCAAGGTTTCAGAGGGAAGAGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAA 1204
                      ************************************************************

consensus_9087#0      AATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCA 1800
consensus_9087#1      AATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAGATCAAGAGAGCTCGCGAGCA 1264
                      ************************************************************

consensus_9087#0      GGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCA--AGGCAGAGGCGAGGAGGGAGGC 1858
consensus_9087#1      GGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGGCGAGGAGGGAGGC 1324
                      ************************************  **********************

consensus_9087#0      CGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCG 1918
consensus_9087#1      CGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCG 1384
                      ************************************************************

consensus_9087#0      GAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCAC 1978
consensus_9087#1      GAAAACCGGGCACATACCTTCCTCAATCTCCTGCTGGTGCTGGTGCCTGTGATTCTTCAC 1444
                      ************************************************************

consensus_9087#0      TCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATG 2038
consensus_9087#1      TCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCATG 1504
                      ************************************************************

consensus_9087#0      TAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTT 2098
consensus_9087#1      TAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTT 1564
                      ************************************************************

consensus_9087#0      TTGTCCAAAAAAAAAAAAA 2117
consensus_9087#1      -------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)