Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9091 cluster # 9091       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9091#0 length = 1953 sequences # 4  
consensus_9091#1 length = 530 sequences # 1  
consensus_9091#2 length = 506 sequences # 1  

consensusID : consensus_9091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1953
fasta sequence
                              [TCTCTTTTCCATTGCAGAGCCCTCACGCTTCCGCAACCACCACCGCGTCCGTGATCCCATCCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCG-CGCGGCTGGTGCGCAACCGGGAGAGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTGAAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAGAACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCGCCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCCTACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAGCCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGTGTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTAAATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCATGGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAGGTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAGCATGTGAAGATCAATGGAAATCTGGTTATTA-AGTCCATTGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGT-GTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAG-CCATAGCCCTCACTTGTAATGTAAGCAAGTTTTACAACGTAATCT-GTAACAGAACGGATCTCCAAATGAGCTGACTTTATTGTGCGATGTTGATAGACATATAGAGCCTTTTTTTTTTCTTTTTACTGGATTACCAGTTTATTGACAGGAATGA]

[+] EMBL AK121898             [TCTCTTTTCCATTGCAGAGCCCTCACGCTTCCGCAACCACCACCGCGTCCGTGATCCCATCCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCG CGCGGCTGGTGCGCAACCGGGAGAGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTGAAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAGAACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCGCCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCCTACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAGCCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGTGTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTAAATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCATGGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAGGTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAGCATGTGAAGATCAATGGAAATCTGGTTATTA AGTCCATTGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGT GTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAG CCATAGCCCTCACTTGTAATGTAAGCAAGTTTTACAACGTAATCT GTAACAGAACGGATCTCCAAATGAGCTGACTTTATTGTGCGATGTTGATAGACATATAGAGCCTTTTTTTTTTCTTTTTACTGGATTACCAGTTTATTGACAGGAATGA]
[+] EMBL CB639751             [                                       CCACCGCGTCCGTGATCCCATCCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGCGGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCCGCGGCTGGTGCGCAACCGGGAGAGCGCGCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB639428             [                                       CCACCGCGTCCGTGATCCCATCCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAGCCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGACTTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGACTTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCGTCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCCAAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA757680             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTATTAGAGTCCATGGTTGCGAGTGAGAAAGCCTCTTCCCGTTTGTCTAACTATGGTGGGAAGGGTTCTGGAAACCAAGAAAAGGAGGAGACTAGCTTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAAGGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGATGGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATGTGCACTGAAGTATTCCAATTTGATTTATCTCCAACGACAGCTGATGCAAATGGCATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGATATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGAGAGTGATAAGGATGGTGAGGGGAGGATCTCCT AAATTCTCTGTCCCGCATCTTCNGTGTCCGTCTTATAGATAGTGGTAAAG ATGTAACATACTATTGGGGCCTTCCTTT AAAAGCCCATAG CCTCACCTGTGATGTAAGCTAGTTTTACACCG GATCTGGTACCAG ACGGATCTTC AATGAGCTGAC TTATTGTGCGATG                                                                 ]


>consensus_9091#0 TCTCTTTTCCATTGCAGAGCCCTCACGCTTCCGCAACCACCACCGCGTCCGTGATCCCAT CCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAG CCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGAC TTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGAC TTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCG TCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCC AAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGC GGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCGCGGCTGGTGCGCAACCGGGAG AGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTG AAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAG AACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCG CCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCC TACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAG CCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGT GTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTA AATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCAT GGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAG GTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAG CATGTGAAGATCAATGGAAATCTGGTTATTAAGTCCATTGTTGCGAGTGAGAAAGCCTCT TCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGC TTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAA GGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGAT GGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATG TGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCATTGTG CCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCT GGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGA GGTTCGACATCCAATGACACGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGC CATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAA GCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTT GTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGCGTCCTTCCTTTCAAAAGC CATAGCCCTCACTTGTAATGTAAGCAAGTTTTACAACGTAATCTGTAACAGAACGGATCT CCAAATGAGCTGACTTTATTGTGCGATGTTGATAGACATATAGAGCCTTTTTTTTTTCTT TTTACTGGATTACCAGTTTATTGACAGGAATGA



consensusID : consensus_9091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence
                              [AAGAAGGTGGAAGAACCAAGAAAGGATGTTGCCGTGAGCTGCAGGAGAGCCAATGCCCGGTGTGACGGAGGGTGTGCAGATATCCTAGATGGAGCAGCGGATGCAATGTGTGCAAAAGCACCCCCCATTAGAAGCCATGAGTGCAGAGCCCATGGCTGGTGCAGTGAAGCCAGTGTGTGCGTGCCGTGTGGTGAGTGTCTGCTGGTGCCTGGGCTGGATGTCCACAGGAAGGAGAGTGGATGAGGGATGGGGTGGAGGGGGGAGGATGCTGCCTGCCAAAATGTGCTGCTGTGCCCCGCATGCTGTGCGTGTGGTGCGTGTGCTGTGATGAGATGACGTGGTGAAAAGTGATGGTGAACCATGACTGCTGTGGTGGTGCCTTGCCCTGTGTGCAAAAGGCCATGAGCCCTCACCTGTAATGTAAGCTAGTTTTACACGTAGTCTGTAACAGAACGGATCTCCCAATGAGCGGACTTTATTGTGCGATGTTGATAGAGACATATAGAGCCTTTTTTTTTTTAAAAAAAAAA]

[+] EMBL BI804251             [AAGAAGGTGGAAGAACCAAGAAAGGATGTTGCCGTGAGCTGCAGGAGAGCCAATGCCCGGTGTGACGGAGGGTGTGCAGATATCCTAGATGGAGCAGCGGATGCAATGTGTGCAAAAGCACCCCCCATTAGAAGCCATGAGTGCAGAGCCCATGGCTGGTGCAGTGAAGCCAGTGTGTGCGTGCCGTGTGGTGAGTGTCTGCTGGTGCCTGGGCTGGATGTCCACAGGAAGGAGAGTGGATGAGGGATGGGGTGGAGGGGGGAGGATGCTGCCTGCCAAAATGTGCTGCTGTGCCCCGCATGCTGTGCGTGTGGTGCGTGTGCTGTGATGAGATGACGTGGTGAAAAGTGATGGTGAACCATGACTGCTGTGGTGGTGCCTTGCCCTGTGTGCAAAAGGCCATGAGCCCTCACCTGTAATGTAAGCTAGTTTTACACGTAGTCTGTAACAGAACGGATCTCCCAATGAGCGGACTTTATTGTGCGATGTTGATAGAGACATATAGAGCCTTTTTTTTTTTAAAAAAAAAA]


>consensus_9091#1 AAGAAGGTGGAAGAACCAAGAAAGGATGTTGCCGTGAGCTGCAGGAGAGCCAATGCCCGG TGTGACGGAGGGTGTGCAGATATCCTAGATGGAGCAGCGGATGCAATGTGTGCAAAAGCA CCCCCCATTAGAAGCCATGAGTGCAGAGCCCATGGCTGGTGCAGTGAAGCCAGTGTGTGC GTGCCGTGTGGTGAGTGTCTGCTGGTGCCTGGGCTGGATGTCCACAGGAAGGAGAGTGGA TGAGGGATGGGGTGGAGGGGGGAGGATGCTGCCTGCCAAAATGTGCTGCTGTGCCCCGCA TGCTGTGCGTGTGGTGCGTGTGCTGTGATGAGATGACGTGGTGAAAAGTGATGGTGAACC ATGACTGCTGTGGTGGTGCCTTGCCCTGTGTGCAAAAGGCCATGAGCCCTCACCTGTAAT GTAAGCTAGTTTTACACGTAGTCTGTAACAGAACGGATCTCCCAATGAGCGGACTTTATT GTGCGATGTTGATAGAGACATATAGAGCCTTTTTTTTTTTAAAAAAAAAA



consensusID : consensus_9091#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence
                              [TGCAAATGGCAATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGATATCCAATGACACCGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGAGAGTGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGTGTCCTTCCTTTCAAAAGCCATAGCCCTCACCTGTAATGTAAGCTAGTTTTACAACGTAGTCTGTAACAGAACGGATCTCCAATGAGCTGACTTTATTGTGCGATGTTGATAGAGACATATAGACCTTTTTTTTTTTAAAAAAAAAA]

[+] EMBL BI803477             [TGCAAATGGCAATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACGAGGTTCGATATCCAATGACACCGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGGAAGAGAGTGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGTGTCCTTCCTTTCAAAAGCCATAGCCCTCACCTGTAATGTAAGCTAGTTTTACAACGTAGTCTGTAACAGAACGGATCTCCAATGAGCTGACTTTATTGTGCGATGTTGATAGAGACATATAGACCTTTTTTTTTTTAAAAAAAAAA]


>consensus_9091#2 TGCAAATGGCAATTGTGCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATA CTGAAAATCTTCCTTCTGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAG AAGCCATCCCTTTACGAGGTTCGATATCCAATGACACCGGATCATTTCAAAGCACCCCCC AAGAACCATAGTCAGAGCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTC CTGGCTGATCCAAGGGAAGAGAGTGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCT CTGTCCCGCATCTTCGTTGTCGTTCTTATAGATAGTGTAAAGTATGTAACATACTCTTGT GTCCTTCCTTTCAAAAGCCATAGCCCTCACCTGTAATGTAAGCTAGTTTTACAACGTAGT CTGTAACAGAACGGATCTCCAATGAGCTGACTTTATTGTGCGATGTTGATAGAGACATAT AGACCTTTTTTTTTTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9091#0      TCTCTTTTCCATTGCAGAGCCCTCACGCTTCCGCAACCACCACCGCGTCCGTGATCCCAT 60
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      CCACCTCCATCGCCGCCGCCGCCGCGTATGCGCCGCCGGTGACCGGGATCCATGGCGGAG 120
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      CCGGACCTACTCGCGCCCTTCGCCGACCTCCCCTTCCCCCCCGGCGACGATTTCCCCGAC 180
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TTCCCGACCCTCGGGGATGACGCCTTCGCGCTGGAGGATTTCGATCTCGACGATCTGGAC 240
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TTCGACTTCGATGTGGATCTCTTCCCGCCGGATGCGCCGCCGCCGGTGACGACGTCGTCG 300
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TCGTCCTCGGCCGCCGGATCGCCGGAAGCGGGGACGTCGTCGGCCGGCGACGGGGGTTCC 360
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      AAGAACGAGGAGTCCGCGGATTCGTCGTCGCCGTCGAGGAGCGGGAGTGACGGCGGCGGC 420
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      GGCAAGGATGGGAAGGATGATGAGGCGAAGCGGCGCGCGCGGCTGGTGCGCAACCGGGAG 480
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      AGCGCGCACCAGTCGCGGCAGAGGAAGAAGCAGTACGTGGAGGAGCTGGAGGGGAAGGTG 540
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      AAGGTGATGCAGGCCACCATCGCCGACCTCACCGCCAGGATCTCCTGCGTCACGGCCGAG 600
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      AACGCCGCCCTCAAGCAGCAATTGGGTGGCGCCGCCGGTGCTGGTGCCGCCGCGCCACCG 660
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      CCGCCAATGCCCATGTACCCTGCGGTTTACCCATTGCCGATGCCATGGATCCACCCAGCC 720
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TACGCAATGCGTGGCTCGCAGGTGCCGCTTGTGCCGATACCCCGGCTCAAGACGCAGCAG 780
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      CCTGCGTCCACACCGGAGCCACCGGCCAAGAAGGCCCGGAAGACCAAGAAGGTTGCAGGT 840
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      GTTAGCCTGCTTGGATTGCTGTTCTTGATGATGGTCTGCGGGTGTTTGGTTCCTGCGGTA 900
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      AATCGGATGTATGGTGCAGCGTACACTGGGGAAGGCGCTGCGATTGTTCCGTCACATCAT 960
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      GGGAGAATTCTGGCTGTTGAAGGGCCACAAAATAGTGTCTCAAATGGTGTTGATCCGAAG 1020
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      GTACCTCAGAATGGAAGCGAAACGCTGCCAGCTTTGTTATATTTGCCGAGGAATGGGAAG 1080
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      CATGTGAAGATCAATGGAAATCTGGTTATTAAGTCCATTGTTGCGAGTGAGAAAGCCTCT 1140
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TCCCGTTTGTCTAACTATGGCGAGAAGGGTTCTGGAAACCAAGGAAAGGAGGAGACTAGC 1200
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TTAGCAATCCCTGGCTATGTAGCTCCGTTAGAAGCTGGAGAAGTCATGGATTCTGCTAAA 1260
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      GGAATGAATGAACTGATGGCTCTGGCTCCTGGAGATGGAAGCATATACAGGGAGGATGAT 1320
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      GGGATGCTGCCGCAGTGGTTTAGTGAAGCAATGTCAGGTCCCATGTTGAACTCCGGGATG 1380
consensus_9091#2      ------------------------------------------------------------
consensus_9091#1      ------------------------------------------------------------
                                                                                  

consensus_9091#0      TGCACTGAAGTATTCCAATTTGATTTATCTCCAACAACAGCTGATGCAAATGGCA-TTGT 1439
consensus_9091#2      --------------------------------------------TGCAAATGGCAATTGT 16
consensus_9091#1      -------------------------------AAGAAGGTGGAAGAACCAAGAAAGGATGT 29
                                                                    * **       ***

consensus_9091#0      GCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTC 1499
consensus_9091#2      GCCTGTCTACTCTGGGTCAGTGACTAACACGTCACAAAATTATACTGAAAATCTTCCTTC 76
consensus_9091#1      TGCCGTGAGCTGCAGGAGAGCCAATGCCCGGTGTGACGGAGGGTGTGCAGATATCCTAGA 89
                        * **   **   **  **  * *  *  **   *         ** * ** * *    

consensus_9091#0      TGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACG 1559
consensus_9091#2      TGGCCCTGTTCAGAAGGTGAAGAACAGAAGGATTTCGTACTCAGAAGCCATCCCTTTACG 136
consensus_9091#1      TGGAGCAGCGGATGCAATGT-GTGCAAAAGCACCCCCCA-TTAGAAGCCATGAGTGC--- 144
                      ***  * *   *     **  *  ** *** *   *  * * *********   *     

consensus_9091#0      AGGTTCGACATCCAATGACAC-GGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGA 1618
consensus_9091#2      AGGTTCGATATCCAATGACACCGGATCATTTCAAAGCACCCCCCAAGAACCATAGTCAGA 196
consensus_9091#1      AGAGCCCATGGCTGGTG-CAGTGAAGCCAGTGTGTGCGTGCCGTGTGGTGAGTGTCTGCT 203
                      **   * *   *   ** **  * * *   *    **   **    *     *       

consensus_9091#0      GCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGG 1678
consensus_9091#2      GCCATGCTGGTCGTAAGCCAGTTTCGTCCGTTGTAGTCTCTGTCCTGGCTGATCCAAGGG 256
consensus_9091#1      GGTGCCTGGGCTGGATGTCCACAGGAAGGAGAGTGGATGAGGGATGGGGTGGAG-GGGGG 262
                      *       **  * * * *             ** *     *    ** **      ***

consensus_9091#0      AAGCGAGCGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCG 1738
consensus_9091#2      AAGAGAGTGATAGGGATGGTGAGGGGAGGATCTCCTCAAATTCTCTGTCCCGCATCTTCG 316
consensus_9091#1      AGGATGCTGCCTGCCAAAATGTGCTGCTGTGCCCCGCATGCTGTGCGTGTGGTGCGTGTG 322
                      * *     *   *  *   ** *  *  *  * ** **   * *  **   *    *  *

consensus_9091#0      TTGTCGTTCTTATAGATAGTGTAAAGTA----TGTAACAT-ACTCTTGCG---------- 1783
consensus_9091#2      TTGTCGTTCTTATAGATAGTGTAAAGTA----TGTAACAT-ACTCTTGTG---------- 361
consensus_9091#1      CTGTGATGAGATGACGTGGTGAAAAGTGATGGTGAACCATGACTGCTGTGGTGGTGCCTT 382
                       ***  *      *  * *** *****     ** * *** ***  ** *          

consensus_9091#0      -TCCTTCCTTTCAAAAGCCAT-AGCCCTCACTTGTAATGTAAGCAAGTTTTACAACGTAA 1841
consensus_9091#2      -TCCTTCCTTTCAAAAGCCAT-AGCCCTCACCTGTAATGTAAGCTAGTTTTACAACGTAG 419
consensus_9091#1      GCCCTGTGTGCAAAAGGCCATGAGCCCTCACCTGTAATGTAAGCTAGTTTTACA-CGTAG 441
                        ***   *   *** ***** ********* ************ ********* **** 

consensus_9091#0      TCTGTAACAGAACGGATCTCCAAATGAGCTGACTTTATTGTGCGATGTTGATAGACATAT 1901
consensus_9091#2      TCTGTAACAGAACGGATCTCCAA-TGAGCTGACTTTATTGTGCGATGTTGATAGAGACAT 478
consensus_9091#1      TCTGTAACAGAACGGATCTCCCAATGAGCGGACTTTATTGTGCGATGTTGATAGAGACAT 501
                      ********************* * ***** ************************* * **

consensus_9091#0      AGAGCCTTTTTTTTTTCTTTTTACTGGATTACCAGTTTATTGACAGGAATGA 1953
consensus_9091#2      ATAGACCTTTTTTTTTTTAAAAAAAAAA------------------------ 506
consensus_9091#1      ATAGAGCCTTTTTTTTTTTAAAAAAAAAA----------------------- 530
                      * **    ******** *    *    *                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)