These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1723 fasta sequence [GACCCTCACGAACACTACTTGATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGCCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTGTACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAAACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTTCAGTTCAATGTCATGTATATTAGCATGCCATGTTTTCGATGATGTTGTAGGTTTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCAAACGGAACCTTGATGGTTTGAGGACAGTCCCTTCAATGATATACAAATCAAATATTTTCTTGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCATGTCTTTTTTGCTATGCATGGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCAAGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAACGTTCAAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCAGCTCAGCATCTTTTCTTGGTTTGCAACATTGCATAAGTTTGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCATTCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTT-CCCTGTTC-CCAAATGTACTCTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAGAGATTAATGAACTGTCATGTGG] [+] EMBL AK121957 [GACCCTCACGAACACTACTTGATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGCCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTGTACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAAACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTTCAGTTCAATGTCATGTATATTAGCATGCCATGTTTTCGATGATGTTGTAGGTTTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCAAACGGAACCTTGATGGTTTGAGGACAGTCCCTTCAATGATATACAAATCAAATATTTTCTTGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCATGTCTTTTTTGCTATGCATGGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCAAGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAACGTTCAAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCAGCTCAGCATCTTTTCTTGGTTTGCAACATTGCATAAGTTTGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCATTCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTT CCCTGTTC CCAAATGTACTCTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAGAGATTAATGAACTGTCATGTGG] [+] EMBL CB637842 [ GATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGCCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTCTTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTCTACAAATGTTTTGTAATTGAACATGTGCACTTATATGTTAGCATTGTACTTGTTGAG ] [+] EMBL CB648565 [ CCGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCCCTGTCCTCGTACGGTTGGCGGGAAGGTGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGAGCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAACAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTTATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGTGGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAATGTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTGTACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAAACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCACTCCACTTCAGTTCAATGTCATGTATATTACCATGCCATGTTTTCGATGATGTTGTAGGTTTATATCAATCCATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACC AACGGAACCTTGATGGTTTGAGGACAGTCC ] [-] EMBL CB637843 [ TCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCCCCTGTTCNCCAAATGTACTCTGAAAATAAGAACTATGTT TTTCTCTTCATATCAAATGTATAAATGGTTACCCTGTTAAAAGAGATTAAa ] consensusID : consensus_9095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [TGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTTTGTTGGAGGCACGGCCTTTATGTGATCATTTTAATGGAGTAATGGCCTTCCATTGCTATATTTGGAACATATAGATACCAAGTTTTGTTTTGAGTGCAAAAACTGTCACTTTGATGGGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTTTGAATATGACTTTGAACGTTGGGGGGAAGTTGCAACACCGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAAT-TTTTTTTACTACCAGTTGTTGTCGAGGGGTTTTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGAATAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCCCCTGCTTTGGTTTCCCGGTTCCCAAATGTACTTTGAAAATAAGAACTATGTTATTT-CTCTTCATATCAAATGTATAAAATGGTTACCCCTTTTAAGGGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGGGGCGGC] [-] EMBL CB648566 [TGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTTTGTTGGAGGCACGGCCTTTATGTGATCATTTTAATGGAGTAATGGCCTTCCATTGCTATATTTGGAACATATAGATACCAAGTTTTGTTTTGAGTGCAAAAACTGTCACTTTGATGGGATCTTTTGAATTTGTACAAATTTTAATAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTTTGAATATGACTTTGAACGTTGGGGGGAAGTTGCAACACCGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAAT TTTTTTTACTACCAGTTGTTGTCGAGGGGTTTTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGGTTGAATAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCCCCTGCTTTGGTTTCCCGGTTCCCAAATGTACTTTGAAAATAAGAACTATGTTATTT CTCTTCATATCAAATGTATAAAATGGTTACCCCTTTTAAGGGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAGGGG ] [-] EMBL AU225873 [ ccgcTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTNNTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCCCTGTTCCCAAATGTACTCTGAAAATAAGAACTATGTTATTTNNTNTTCATATCAAATGTAT AAATGGTTA CCCTGTTAA AAGAGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9095#0 GACCCTCACGAACACTACTTGATCTTATCTGAGCTTGCCGTCCGGCGGCGCCGCGGCTGC 60 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 CGGAGTCGCCTCTCCGGCATTCGCGCCGCCACCGCTGTCCTCGTACGGTTGGCGGGAAGG 120 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 TGGCGCGCTTTGTTCGGGGAAAGAGGCGGGTTTGGTATCCGTGGCGCTCGCCGGCGGTGA 180 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 GCGATGACGACTGCCCGCGGTCGGAGCGCGTGCGATGATGGCCGCGCGGGTTCACCAAAA 240 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 CAACAAACAGATCACAATGTTTTGCGTTTTTTCTGCCATTGTTTTATTGATGATTTTTTT 300 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 ATTCGGAGTTCTATTCATTTAGTTGTTCTCGTATTAGTCAATGTGCGTTGGGTTGTTAGT 360 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 GGTTTCGTAGATCCTGTTTGGCAATAGTGGATGTAAAAGCGCTTTTTGTTTGTGTAGAAT 420 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 GTGTTAGGATAGTATACAAATGTTTTGTAATTGAACATGTGCATAGATATGTTAGCATTG 480 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 TACTTGTTGAGCTTACTTTGTAAGTTTGGGCATATCGAATTTTGCTTAATTATCATTGAA 540 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 ACCTTGTTTTCATCCTAGTTTTGTAGTTTAGTTTTTAAATATGTCCATATTACAGTATCA 600 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 CTCCACTTCAGTTCAATGTCATGTATATTAGCATGCCATGTTTTCGATGATGTTGTAGGT 660 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 TTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCA 720 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 AACGGAACCTTGATGGTTTGAGGACAGTCCCTTCAATGATATACAAATCAAATATTTTCT 780 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 TGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCATGTCTTTTTTGCTATGCAT 840 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 GGCTGATGTGGACTCTAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCA 900 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 AGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAACGTTC 960 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 AAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCA 1020 consensus_9095#1 ------------------------------------------------------------ consensus_9095#0 GCTCAGCATCTTTTCTTGGTTTGCAACATTGCATAAGTTTGTAGGGTTTTAGAAGCCGTG 1080 consensus_9095#1 ---------------------------------------TGTAGGGTTTTAGAAGCCGTG 21 ********************* consensus_9095#0 CAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCAT 1140 consensus_9095#1 CAGAGCACTACAACAGTGCCTACAATCCGTTTGTTGGAGGCACGGCCTTTATGTGATCAT 81 ****************************** ******* ********************* consensus_9095#0 TCTAATGGAGTAATGGCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTT 1200 consensus_9095#1 TTTAATGGAGTAATGGCCTTCCATTGCTATATTTGGAACATATAGATACCAAGTTTTGTT 141 * ****************************** *************** ***** ***** consensus_9095#0 TTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAATAGTG 1260 consensus_9095#1 TTGAGTGCAAAAACTGTCACTTTGATGGGATCTTTTGAATTTGTACAAATTTTAATAGTG 201 *************************** ******************************** consensus_9095#0 GGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAAT 1320 consensus_9095#1 GGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTTTGAAT 261 ****************************************************** ***** consensus_9095#0 ATGACTCTGAACGTTGGTGTGAAGTTGCAACAACGGGAAGATGGCGAGTATGTTGAAGAA 1380 consensus_9095#1 ATGACTTTGAACGTTGGGGGGAAGTTGCAACACCGGGAAGATGGCGAGTATGTTGAAGAA 321 ****** ********** * ************ *************************** consensus_9095#0 AACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGC 1440 consensus_9095#1 AACTGATGCAGTCATGAAGATCATATTTAATTTTTTTTACTACCAGTTGTTGTCGAGGGG 381 ******************************* **** ******************* ** consensus_9095#0 TTCTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTA 1500 consensus_9095#1 TTTTTCATTCTTTGTTGCTGATCTATCGCTGTTTGTCCCCGACTCGATACTTCCCTTTTA 441 ** ********************************** ********************** consensus_9095#0 GTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGG 1560 consensus_9095#1 GTTTTAGGTTGACTAAGGCTAGGTTTGTCCCCGACTCGATACTTCCCTTTTAGTTTTAGG 501 ***************************** ****************************** consensus_9095#0 TTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCC 1620 consensus_9095#1 TTGAATAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCCCCTGCTTTGGTTTCC 561 **** *************************************** ********* ***** consensus_9095#0 CTGTTCCCAAATGTACTCTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTAT 1680 consensus_9095#1 CGGTTCCCAAATGTACTTTGAAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTAT 621 * *************** ****************************************** consensus_9095#0 AAA-TGGTTACCCTGTTAAAAGAG--ATTAATGAACTGTCATGTGG-------------- 1723 consensus_9095#1 AAAATGGTTACCCCTTTTAAGGGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA 681 *** ********* ** ** * * ***** ** * consensus_9095#0 -------- consensus_9095#1 GGGGCGGC 689 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||