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Oryza sativa
cluster # 9098 cluster # 9098       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9098#0 length = 1679 sequences # 1  
consensus_9098#1 length = 1548 sequences # 5  

consensusID : consensus_9098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1679
fasta sequence
                              [TTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTCGGCGCAAGTTCTTCGGCTGCCTCAAGGTGCGTACACCACGCCCGAGTCTCTGCTCTGTTTTTTACTTGCTATGCATCTCTGTTCGTAGCTTATCGATGTCGAGTCACCATGACACCTGTTCCGTGCTCGTGCCGTTAGAGTTAGCAATGGGAATATGGGATGCGAATGGCAATTCCGTTGGTAGAGATCGAGAAAGGCGAGATCTTTCTTGCCGCGGCGCGCGCAGGCAGCGCCCACAGACAAGAGCTAGCAGAGCGGCAGAGAAGGCCAGCACCCAGATCTGCAATGGGTGGTAGCCCCACCGCTCATTCCTTTCTCCTTAATTTCGCTCCCCTCCTTCGTTTTTTTTTTCCCTTTTTCTCGTCCTTCTCTCGCGTGTCCCGGTCGGAGGGTGGGGGCGTGCCGGCGCGGCGCGGCGTGGGTGCTCGATGGCCGCGACCACTCCGTCATCTCTATCTCGTCTCTCCTCATCATGGATCCAGCCATGGAGAAGAACCCCACAAAAGTCATACAGGAGAGATAGATAGAGTCGTCTCTTCGTGCTGGCTCGAGATCTATTATTGGCTAGCAGGTTGGTTTTTCGGTGGGAAGCAGAGTGGTTCAATACAAGCGGACAACGACGCGTTCATCGGCAAGGTTAGGTGGATGGATAGATTAGGAGGCGGGCCGCCATATCTCTCCTGACGCCTGCAATTTGCCGTCTTCCTCGTTACCTACCCGATCAAGAGAGATCATCATTCCCTCTCCATCTCCCCTCTTTTTCCGCACGGGGTTTGGAGAGATCAGCCGATCAGGTCGCCGATCCTTATCCCAATGCCGTCTTTCAGTCCGATTTCTACTGTATACGCACGCGTATCGCGTTCTTGCTACCTGTACTTTCAGAATTCTGCCGCTTCTGCAGCGGCTGCAGCGGCGCAGATGCCATGACATGGGTGCTGTCCTGGGACACATCACACATGGCATCTGCGTACTAGACAGGGCGGATGGGTCTTGGAGTTCAGGGGCATGTCCCGACTCCCGCACTGTGGCCTCCGTGATCACGCGGGCATTAAGCGGGTTCTGGATTAGATCAGATCAGATCGTCTCATCGTTCTTATGCTGCTTGCTGCATTTTTCGCAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGACCATGAAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCGTGCCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGCATCAGGTCAGCACAAATACTCCAATCTTTTTATCTCACAATACAGTCTTTTCAGTTCGTCAGGCATGACAATAGAGTAGTTATGGAGAACTTATTTGGGGAAATGGTAATGCAAGATGAAAAATGTCAGTTTGTTCCATTACCCGAGTTGGGGATAAGATGTAGACAGTTGATGTTATTGGCCTCACACTCTAGTCATGTCTCTTATGATGGATCGATCCATATGAGTTGATTCCTCACAACAGTAGCATCTATTTGCATCACTGAATTTGTTCATTCTAGTCATAAATAGTTGTGACAAATTGATATTACATCCGTCCCAAAATAAGTGCAGTCGTAGGGAACCGTGTCCGACGTTTGACCGTTCGTCTTATTTG]

[+] EMBL AK109598             [TTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTCGGCGCAAGTTCTTCGGCTGCCTCAAGGTGCGTACACCACGCCCGAGTCTCTGCTCTGTTTTTTACTTGCTATGCATCTCTGTTCGTAGCTTATCGATGTCGAGTCACCATGACACCTGTTCCGTGCTCGTGCCGTTAGAGTTAGCAATGGGAATATGGGATGCGAATGGCAATTCCGTTGGTAGAGATCGAGAAAGGCGAGATCTTTCTTGCCGCGGCGCGCGCAGGCAGCGCCCACAGACAAGAGCTAGCAGAGCGGCAGAGAAGGCCAGCACCCAGATCTGCAATGGGTGGTAGCCCCACCGCTCATTCCTTTCTCCTTAATTTCGCTCCCCTCCTTCGTTTTTTTTTTCCCTTTTTCTCGTCCTTCTCTCGCGTGTCCCGGTCGGAGGGTGGGGGCGTGCCGGCGCGGCGCGGCGTGGGTGCTCGATGGCCGCGACCACTCCGTCATCTCTATCTCGTCTCTCCTCATCATGGATCCAGCCATGGAGAAGAACCCCACAAAAGTCATACAGGAGAGATAGATAGAGTCGTCTCTTCGTGCTGGCTCGAGATCTATTATTGGCTAGCAGGTTGGTTTTTCGGTGGGAAGCAGAGTGGTTCAATACAAGCGGACAACGACGCGTTCATCGGCAAGGTTAGGTGGATGGATAGATTAGGAGGCGGGCCGCCATATCTCTCCTGACGCCTGCAATTTGCCGTCTTCCTCGTTACCTACCCGATCAAGAGAGATCATCATTCCCTCTCCATCTCCCCTCTTTTTCCGCACGGGGTTTGGAGAGATCAGCCGATCAGGTCGCCGATCCTTATCCCAATGCCGTCTTTCAGTCCGATTTCTACTGTATACGCACGCGTATCGCGTTCTTGCTACCTGTACTTTCAGAATTCTGCCGCTTCTGCAGCGGCTGCAGCGGCGCAGATGCCATGACATGGGTGCTGTCCTGGGACACATCACACATGGCATCTGCGTACTAGACAGGGCGGATGGGTCTTGGAGTTCAGGGGCATGTCCCGACTCCCGCACTGTGGCCTCCGTGATCACGCGGGCATTAAGCGGGTTCTGGATTAGATCAGATCAGATCGTCTCATCGTTCTTATGCTGCTTGCTGCATTTTTCGCAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGACCATGAAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCGTGCCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGCATCAGGTCAGCACAAATACTCCAATCTTTTTATCTCACAATACAGTCTTTTCAGTTCGTCAGGCATGACAATAGAGTAGTTATGGAGAACTTATTTGGGGAAATGGTAATGCAAGATGAAAAATGTCAGTTTGTTCCATTACCCGAGTTGGGGATAAGATGTAGACAGTTGATGTTATTGGCCTCACACTCTAGTCATGTCTCTTATGATGGATCGATCCATATGAGTTGATTCCTCACAACAGTAGCATCTATTTGCATCACTGAATTTGTTCATTCTAGTCATAAATAGTTGTGACAAATTGATATTACATCCGTCCCAAAATAAGTGCAGTCGTAGGGAACCGTGTCCGACGTTTGACCGTTCGTCTTATTTG]


>consensus_9098#0 TTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTCGGCGCAAGTTCTTCGGC TGCCTCAAGGTGCGTACACCACGCCCGAGTCTCTGCTCTGTTTTTTACTTGCTATGCATC TCTGTTCGTAGCTTATCGATGTCGAGTCACCATGACACCTGTTCCGTGCTCGTGCCGTTA GAGTTAGCAATGGGAATATGGGATGCGAATGGCAATTCCGTTGGTAGAGATCGAGAAAGG CGAGATCTTTCTTGCCGCGGCGCGCGCAGGCAGCGCCCACAGACAAGAGCTAGCAGAGCG GCAGAGAAGGCCAGCACCCAGATCTGCAATGGGTGGTAGCCCCACCGCTCATTCCTTTCT CCTTAATTTCGCTCCCCTCCTTCGTTTTTTTTTTCCCTTTTTCTCGTCCTTCTCTCGCGT GTCCCGGTCGGAGGGTGGGGGCGTGCCGGCGCGGCGCGGCGTGGGTGCTCGATGGCCGCG ACCACTCCGTCATCTCTATCTCGTCTCTCCTCATCATGGATCCAGCCATGGAGAAGAACC CCACAAAAGTCATACAGGAGAGATAGATAGAGTCGTCTCTTCGTGCTGGCTCGAGATCTA TTATTGGCTAGCAGGTTGGTTTTTCGGTGGGAAGCAGAGTGGTTCAATACAAGCGGACAA CGACGCGTTCATCGGCAAGGTTAGGTGGATGGATAGATTAGGAGGCGGGCCGCCATATCT CTCCTGACGCCTGCAATTTGCCGTCTTCCTCGTTACCTACCCGATCAAGAGAGATCATCA TTCCCTCTCCATCTCCCCTCTTTTTCCGCACGGGGTTTGGAGAGATCAGCCGATCAGGTC GCCGATCCTTATCCCAATGCCGTCTTTCAGTCCGATTTCTACTGTATACGCACGCGTATC GCGTTCTTGCTACCTGTACTTTCAGAATTCTGCCGCTTCTGCAGCGGCTGCAGCGGCGCA GATGCCATGACATGGGTGCTGTCCTGGGACACATCACACATGGCATCTGCGTACTAGACA GGGCGGATGGGTCTTGGAGTTCAGGGGCATGTCCCGACTCCCGCACTGTGGCCTCCGTGA TCACGCGGGCATTAAGCGGGTTCTGGATTAGATCAGATCAGATCGTCTCATCGTTCTTAT GCTGCTTGCTGCATTTTTCGCAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGACCATG AAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCGTG CCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGCATCAGGTCAGCACAAAT ACTCCAATCTTTTTATCTCACAATACAGTCTTTTCAGTTCGTCAGGCATGACAATAGAGT AGTTATGGAGAACTTATTTGGGGAAATGGTAATGCAAGATGAAAAATGTCAGTTTGTTCC ATTACCCGAGTTGGGGATAAGATGTAGACAGTTGATGTTATTGGCCTCACACTCTAGTCA TGTCTCTTATGATGGATCGATCCATATGAGTTGATTCCTCACAACAGTAGCATCTATTTG CATCACTGAATTTGTTCATTCTAGTCATAAATAGTTGTGACAAATTGATATTACATCCGT CCCAAAATAAGTGCAGTCGTAGGGAACCGTGTCCGACGTTTGACCGTTCGTCTTATTTG



consensusID : consensus_9098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1548
fasta sequence
                              [CCGACGCTGTCTTCTTCCTCGTCATCAATCATCTTCCCCCCTCTCTCTCTCTCTCTCTCTTTCTCTGACTTCTTCTTTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTCGGCGCAAGTTCTTCGGCTGCCTCAAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGACCATGAAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCGTGCCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGCATCAGATCGAAGCTCTGAAAGAAGTTGGAGTTACAGAAGTTGTTCTGGCCATCAATTACCAGCCCGAGGTCATGCTTAACTTTCTCAAGGACTTCGAGAGCAAGCTTGGTATCAAGATCACCTGCTCGCAGGAGACAGAGCCACTCGGAACCGCCGGGCCGCTGGCCCTGGCACGCGACAAGCTCGCTGACGGCTCCGGCGACCCTTTCTTCGTCCTCAACAGCGACGTGATC-AGCGAGTACCCATTCGCCGAGCTCATCCAGTTCCACAAGTCCCATGGCGGCGAGGCCACGATCATGGTCACCAAGGTTGACGAGCCTTCCAAGTACGGCGTGGTGGTCATGGAGGATGAGACCGACAAGGTGGAGCGCTTCGTGGAGAAGCCCAAGGTGTTCGTCGGCAACAAGATCAACGCCGGCATCTACCTGCTCAACCCGTCGGTGCTGGACCGCATCGAGCTGAAGCCCACGTCCATCGAGAAGGAGGTGTTCCCGCGCATCGCCGCGGACAATGGCCTGTTCGCCATGGTCCTGCCTGGGTTCTGGATGGACATCGGGCAGCCGAGGGACTACATCACCGGGCTGAGGCTGTACCTCGACTCGCTTAGGAAGAAGGCGCCCGCCAAGCTCGCGTCGGGCGCGCACGTCCTGGGCAACGTGCTCGTCCACGAGACCGCCGTCATCGGCGAGGGTTGCCTGATCGGGCCGGACGTCGCCGTTGGCCCCGGGTGCGTGGTGGAGGCCGGGGTGAGGCTGTCCCGGTGCACGGTGATGCGCGGCGCCCGCGTCAAGAAGCACGCGTGCATCTCCAGCAGCATCATCGGGTGGCACTCCACCGTCGGCATGTGGGCGCGCGTCGAGAACATGACCATCCTCGGCGAGGACGTGCACGTCTGCGACGAGGTCTACAGCAACGGCGGCGTGGTGCTCCCGCACAAGGAGATCAAGTCCAGCATCCTCAAGCCCGAGATTGTCATGTGACAAGGCGAGGCGAGGCGAAGGATTAATCTGCGCGTCTTTCGTTTACATGGTGGTGACGATGCTAAGTGCGTCGGAAGAAGGGGGCCATTATGTGCTTGATATGTTTGTTGTTTGATTTGTTCCTGAACTGTCTCTGAAACTGGAAGTGTAACATGTTGTCCCAAGTAGTATGTGTCATCAGGCTATATGGTTGAATGAGTCCAAGTTTCAGTCTTTGCTTGTAGATAGGTGTCACATGAATGGAAAAAAAAACAAAAAAAGGCAGTTCTTTTTGTCTAAAAAA]

[+] EMBL AK121972             [CCGACGCTGTCTTCTTCCTCGTCATCAATCATCTTCCCCCCTCTCTCTCTCTCTCTCTCTTTCTCTGACTTCTTCTTTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTCGGCGCAAGTTCTTCGGCTGCCTCAAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGACCATGAAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCGTGCCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGCATCAGATCGAAGCTCTGAAAGAAGTTGGAGTTACAGAAGTTGTTCTGGCCATCAATTACCAGCCCGAGGTCATGCTTAACTTTCTCAAGGACTTCGAGAGCAAGCTTGGTATCAAGATCACCTGCTCGCAGGAGACAGAGCCACTCGGAACCGCCGGGCCGCTGGCCCTGGCACGCGACAAGCTCGCTGACGGCTCCGGCGACCCTTTCTTCGTCCTCAACAGCGACGTGATC AGCGAGTACCCATTCGCCGAGCTCATCCAGTTCCACAAGTCCCATGGCGGCGAGGCCACGATCATGGTCACCAAGGTTGACGAGCCTTCCAAGTACGGCGTGGTGGTCATGGAGGATGAGACCGACAAGGTGGAGCGCTTCGTGGAGAAGCCCAAGGTGTTCGTCGGCAACAAGATCAACGCCGGCATCTACCTGCTCAACCCGTCGGTGCTGGACCGCATCGAGCTGAAGCCCACGTCCATCGAGAAGGAGGTGTTCCCGCGCATCGCCGCGGACAATGGCCTGTTCGCCATGGTCCTGCCTGGGTTCTGGATGGACATCGGGCAGCCGAGGGACTACATCACCGGGCTGAGGCTGTACCTCGACTCGCTTAGGAAGAAGGCGCCCGCCAAGCTCGCGTCGGGCGCGCACGTCCTGGGCAACGTGCTCGTCCACGAGACCGCCGTCATCGGCGAGGGTTGCCTGATCGGGCCGGACGTCGCCGTTGGCCCCGGGTGCGTGGTGGAGGCCGGGGTGAGGCTGTCCCGGTGCACGGTGATGCGCGGCGCCCGCGTCAAGAAGCACGCGTGCATCTCCAGCAGCATCATCGGGTGGCACTCCACCGTCGGCATGTGGGCGCGCGTCGAGAACATGACCATCCTCGGCGAGGACGTGCACGTCTGCGACGAGGTCTACAGCAACGGCGGCGTGGTGCTCCCGCACAAGGAGATCAAGTCCAGCATCCTCAAGCCCGAGATTGTCATGTGACAAGGCGAGGCGAGGCGAAGGATTAATCTGCGCGTCTTTCGTTTACATGGTGGTGACGATGCTAAGTGCGTCGGAAGAAGGGGGCCATTATGTGCTTGATATGTTTGTTGTTTGATTTGTTCCTGAACTGTCTCTGAAACTGGAAGTGTAACATGTTGTCCCAAGTAGTATGTGTCATCAGGCTATATGGTT                                                                                           ]
[+] EMBL C27579               [                                                                                                                                                                                                                                                                                          TGCATCAGATCGAAGCTCTGAAAGAAGTTGGAGTTACAGAAGTTGTTCTGGCCATCAATTACCAGCCCGAGGTCATGCTTAACTTTCTCAAGGACTTCGAGAGCAAGCTTGGTATCAAGATCACCTGCTCGCAGGAGACAGAGCCACTCGGAACCGCCGGGCCGCTGGCCTGGGCACGCGACAAGCTCGTTGACGNCTCCGGCGACCCTTTCTTCGTCCTCAACAGCGACGTGATCAAGCGAGTACCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU085744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGCACAAGGAGATCAAGTCCAGCATCCTCAANCCCGAGATTGTCATGTGACAAGGCGAGGCGAGGCGAAGGATTAATCTGCGCGTCTTTCGTTTACATGGTGGTGACGATGCTAAGTGCGTCGGAAGAAGGGGGCCATTATGTGCTTGATATGTTTGTTGTTTGATTTGTTCCTGAACTGTCTCTGAAACTGGAAGTGTAACATGTTGTCCCAAGTAGTATGTGTCATCAGGCTATATGGTTGAATGAGTCCAAGTTTCAGTCTTTGCTTGTAGATAGGTGTCACATGAATGGAAAAAA                                  ]
[+] EMBL OSR08672A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGTGCGTCGGAAGNAGGGGGCCATTATGTGCTTGATATGTTTGTTGTTTGATTTGTTCCTGAACTGTCTCTGAAACTGGAAGTGTAACATGTTGTCCCAAGTAGTATGTGTCATCAGGCTATATGGTTGAATGAGTCCAAGTTTCAGTCTTTGCTTGTAGATAGGTGTCACATGAATGGAAAAAAAAACAAAAAAAGGCAGTTCTTTTTGTCTAAAAAA]
[+] EMBL OSR10501A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAGTGCGTCGNAAGAAGGGGGCCATTATGTGCTTGATATGTTTGTTGTTTGATTTGTTCCTGAACTGTCTCTGAAACTGGAAGTGTAACATGTTGTCCCAAGTAGTATGTGTCATCAGGCTATATGGTTGAATGAGTCCAAGTTTCAGTCTTTGCTTGTAGATAGGTGTCACATGAATGGAAAAAAAAACAAAAAAAGGCAGTTCTTTTTGTCT      ]


>consensus_9098#1 CCGACGCTGTCTTCTTCCTCGTCATCAATCATCTTCCCCCCTCTCTCTCTCTCTCTCTCT TTCTCTGACTTCTTCTTTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTCG GCGCAAGTTCTTCGGCTGCCTCAAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGACCA TGAAGGCGCTCATTCTCGTGGGAGGCTTCGGCACTCGCCTGCGGCCGCTGACTCTCAGCG TGCCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGCATCAGATCGAAGCTC TGAAAGAAGTTGGAGTTACAGAAGTTGTTCTGGCCATCAATTACCAGCCCGAGGTCATGC TTAACTTTCTCAAGGACTTCGAGAGCAAGCTTGGTATCAAGATCACCTGCTCGCAGGAGA CAGAGCCACTCGGAACCGCCGGGCCGCTGGCCCTGGCACGCGACAAGCTCGCTGACGGCT CCGGCGACCCTTTCTTCGTCCTCAACAGCGACGTGATCAGCGAGTACCCATTCGCCGAGC TCATCCAGTTCCACAAGTCCCATGGCGGCGAGGCCACGATCATGGTCACCAAGGTTGACG AGCCTTCCAAGTACGGCGTGGTGGTCATGGAGGATGAGACCGACAAGGTGGAGCGCTTCG TGGAGAAGCCCAAGGTGTTCGTCGGCAACAAGATCAACGCCGGCATCTACCTGCTCAACC CGTCGGTGCTGGACCGCATCGAGCTGAAGCCCACGTCCATCGAGAAGGAGGTGTTCCCGC GCATCGCCGCGGACAATGGCCTGTTCGCCATGGTCCTGCCTGGGTTCTGGATGGACATCG GGCAGCCGAGGGACTACATCACCGGGCTGAGGCTGTACCTCGACTCGCTTAGGAAGAAGG CGCCCGCCAAGCTCGCGTCGGGCGCGCACGTCCTGGGCAACGTGCTCGTCCACGAGACCG CCGTCATCGGCGAGGGTTGCCTGATCGGGCCGGACGTCGCCGTTGGCCCCGGGTGCGTGG TGGAGGCCGGGGTGAGGCTGTCCCGGTGCACGGTGATGCGCGGCGCCCGCGTCAAGAAGC ACGCGTGCATCTCCAGCAGCATCATCGGGTGGCACTCCACCGTCGGCATGTGGGCGCGCG TCGAGAACATGACCATCCTCGGCGAGGACGTGCACGTCTGCGACGAGGTCTACAGCAACG GCGGCGTGGTGCTCCCGCACAAGGAGATCAAGTCCAGCATCCTCAAGCCCGAGATTGTCA TGTGACAAGGCGAGGCGAGGCGAAGGATTAATCTGCGCGTCTTTCGTTTACATGGTGGTG ACGATGCTAAGTGCGTCGGAAGAAGGGGGCCATTATGTGCTTGATATGTTTGTTGTTTGA TTTGTTCCTGAACTGTCTCTGAAACTGGAAGTGTAACATGTTGTCCCAAGTAGTATGTGT CATCAGGCTATATGGTTGAATGAGTCCAAGTTTCAGTCTTTGCTTGTAGATAGGTGTCAC ATGAATGGAAAAAAAAACAAAAAAAGGCAGTTCTTTTTGTCTAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9098#0      --------TTCTCAATTCCCGCCACC--CCGGCACGCCCGCTCTCCTCTGCTCGGCGCAA 50
consensus_9098#1      CCGACGCTGTCTTCTTCCTCGTCATCAATCATCTTCCCCCCTCTCTCTCTCTCT-CTCTC 59
                               ***   * * ** ** *   *  *   *** *****     ***  * *  

consensus_9098#0      GTTCTTCGGCTGCCTCAAGGTGCGTACACCACGCCCGAGTCTCTGCTCTGTTTTTTACTT 110
consensus_9098#1      TTTCTCTGACTTCTTCTTTCTCAATTCCCGCCACCCCGGCACGCCCGCTCTCCTCTGCTC 119
                       ****  * ** * **    *   * * *  * ***  *      * ** *  * * ** 

consensus_9098#0      GCTATGCATCTCTGTTCGTAGCTTATCGATGTCGAGTCACCATGACACCTGTTCCGTGCT 170
consensus_9098#1      GGCGCA-AGTTCTTCGGCTGCCTCAAGGGTGAGGAGGAGCTGAGTTAGCAGGGCTGCGAC 178
                      *      *  ***     *  ** *  * **  ***   *   *  * * *  * * *  

consensus_9098#0      CGTGCCGTTAGAGTTAGCAATGGGAATATGGGATGCGAATGGCAATTCCGTTGGTAGAGA 230
consensus_9098#1      CATGAAGGCGCTCATTCTCGTGGGA-----GGCTTCGGCACTCGCCTGCGGCCGCTGACT 233
                      * **  *       *     *****     ** * **     *   * **   *  **  

consensus_9098#0      TCGAGAAAGGCGAGATCTTTCTTGCCGCGGCGCGCGCAGGCAGCGCCCACAGACAAGAGC 290
consensus_9098#1      CTCAGCGTGCCAAAGCCGCTC-----GTCGATTTCGGGAACAA-GCCCATGATCCTGCAT 287
                         **   * * *   *  **     *  *    **    **  *****    *  *   

consensus_9098#0      TAGCAGAGCGGCAGAGAAGGCCAGCACCCAGATCTGCAATGGGTGGTAGCCCCACCGCTC 350
consensus_9098#1      CAG-ATCGAAGCTCTGAA----AGAAGTTGGAGTTACA----GAAGTTGTTCTGGCCATC 338
                       ** *  *  **   ***    ** *    **  * **    *  ** *  *   *  **

consensus_9098#0      ATTCCTTTCTCCTTAATTTCGCTCCCCTCCTTCGTTTTTTTTTTCCCTTTTTCTCGTCCT 410
consensus_9098#1      AATTACCAGCCCGAGGTCATGCTTAACTTTCTCAAGGACTTCGAGAGCAAGCTTGGTATC 398
                      * *       **    *   ***   **   **      **            * **   

consensus_9098#0      TCTCTCGCGTGTCCCGGTCGGAGGGTGGGGGCGTGCCGGCGCGGCGCGGCGTGGGTGCTC 470
consensus_9098#1      AAGATCACCTGCTCG---CAGGAGACAGAGCCACTCGGAACCGCCGGGCCGCTGGCCCTG 455
                          ** * **  *    * *  *   * * *   * *   ** ** * **  **  ** 

consensus_9098#0      GATGGCCGCGACCACTCCGTCATCTCTATCTCGTCTCTCCTCATCATGGATCCAGCCATG 530
consensus_9098#1      GCACGCGACAAGCTCGCTGACGGCTCCGGCGACCCTTTCTTCGTCCTCAACAGCGACGTG 515
                      *   **  * * * * * * *  ***   *    ** ** ** ** *  *    * * **

consensus_9098#0      GAGAAGAACCCCACAAAAGTCATACAGGAGAGATAGATAGAGTCGTCTCTTCGTGCTGGC 590
consensus_9098#1      ATCAGCGAGTACCCAT---TCGCCGAGCTCATCCAGTTCCACAAGTCCCATGGCGGCGAG 572
                         *   *   * **    **    **   *   ** *  *   *** * * * *  *  

consensus_9098#0      TCGAGATCTATTATTGGCTAGCAGGTTGGTTTTTCGGTGGGAAGCAGAGTGGTTCAATAC 650
consensus_9098#1      GCCACGATCATGGTCACCAAGGTTGACGAGCCTTCCAAGTACGGCGTGGTGGTC--ATGG 630
                       * *     **  *   * **   *  *    ***   *    **   *****   **  

consensus_9098#0      AAGCGGACAACGACGCGTTCATCGGCAAGGTTAGGTGGATGGATAGATTAGGAGGCGGGC 710
consensus_9098#1      AGGATGAGACCGACAAGGT----GGAGCGCTTCGTGGAGAAGCCCAAGGTGTTCGTCGGC 686
                      * *  ** * ****  * *    **   * ** *  *    *    *   *   *  ***

consensus_9098#0      CGCCATATCTCTCCTGACGCCTGCAATTTGCCGTCTTCCTCGTTACCTACCCG-ATCAAG 769
consensus_9098#1      AACAAGATCAACGCCGGCATCTAC---CTGCTCAACCCGTCGGTGCTGGACCGCATCGAG 743
                        * * ***    * * *  ** *    ***      * *** * *    *** *** **

consensus_9098#0      AGAGATCATCATTCCCTCTCCATCTCCCCTCTTTTTCCGCACGGGGTTTGGAGAGATCAG 829
consensus_9098#1      CTGAAGCCCACGTCCATCGAGAAGGAG---GTGTTCCCGCGCATCGCCGCGGACAATGGC 800
                          * *     *** **   *         * ** **** *   *    *    **   

consensus_9098#0      CCGATCAGGTCGCCGATCCTTATCCCAATGCCGTCTTTCAGTCCGATTTCTACTGTA-TA 888
consensus_9098#1      CTGTTCG---CCATGGTCCT-GCCTGGGTTCTGGATGGACATCGGGCAGCCGAGGGACTA 856
                      * * **    *   * ****   *    * * *  *     ** *    *    * * **

consensus_9098#0      CGCACGCGTATCGCGTTCTTGCTACCTGTACTTTCAGAATTCTGCCGCTTCTGCAGCGGC 948
consensus_9098#1      CATCACCGGGCTGAGGCTGTACC-TCGACTCGCTTAGGAAGAAGGCGCCCGCCAAGCTCG 915
                      *     **    * *    * *   *    *  * ** *    * ***      ***   

consensus_9098#0      TGCAGCGGCGCAGATGCCATGACATGGGTGCTGTCCTGGGACACATCACACATGGCATCT 1008
consensus_9098#1      CGTCG-GGCGCGCACGTCCTGGGCAACGTGCTCGTCCACGAGACCGCCGTCATCGGCGAG 974
                       *  * *****  * * * **      *****   *   ** **  *   *** *     

consensus_9098#0      GCGTACTAGACAGGGCGGATGGGTCTTGGAGTTCAGGGGCATGTCCCGACTCCCGCACTG 1068
consensus_9098#1      GGTTGCCTGATCGGGCCGGACGTCGCCGTTGGCCCCGGGTGCGTGGTGGAGGCCGGGGTG 1034
                      *  * *  **  **** *   *     *  *  *  ***   **   *    ***   **

consensus_9098#0      TGGCCTCCGTGATCACGCGGGCATTAAGCGGGTTCTGGATTAGATCAGATCAGATCGTCT 1128
consensus_9098#1      AGGCTGTCCCGGT-GCACGGTGAT-GCGCGGCGCCCGCGTCAAGAAGCACGCGTGCATCT 1092
                       ***   *  * *  * ***  **   ****   * *  * *      *   *  * ***

consensus_9098#0      C-ATCGTTCTTATGCTGCT-TGCTGCATTTTTCGCAGGGTGAGGAGGAGCTGAGTTAGCA 1186
consensus_9098#1      CCAGCAGCATCATCGGGTGGCACTCCACCGTCGGCATG-TGGGCGCGCGTCGAG--AACA 1149
                      * * *    * **   *     ** **   *  *** * ** *   * *  ***  * **

consensus_9098#0      GGGCTGCGACCA-TGAAGGCGCTCATTCTCGTG--GGAGGCTTCGGCACTCGCCTGCGGC 1243
consensus_9098#1      TGACCATCCTCGGCGAGGACGTGCACGTCTGCGACGAGGTCTACAGCAACGGCGGCGTGG 1209
                       * *      *   ** * **  **     * *  *  * ** * ***   **     * 

consensus_9098#0      CGCTGACTCTCAGCGTGCCAAAGCCGCTCGTCGATTTCGGGAACAAGCCCATGATCCTGC 1303
consensus_9098#1      TGCTCCCGCACAAGGAGATCAAGTC---CAGCATCCTCAAGCCCGAG---ATTGTCATGT 1263
                       ***  * * **  * *   *** *   *  *    **  *  * **   **  ** ** 

consensus_9098#0      ATCAGGTCAGCACAAATACTCCAATCTTTTTATCTCACAATACAGTCTTTTCAGTTCGTC 1363
consensus_9098#1      GACAAGGCGAGGCGAGG----CGAAGGATTAATC------TGCGCGTCTTTCGTTTACAT 1313
                        ** * *    * *      * *    ** ***      * *     ****  **    

consensus_9098#0      AGGCATGACAATA--GAGTAGTTATGGAGAACTTATTTGGGGAAATGGTAATGCAAGATG 1421
consensus_9098#1      GGTGGTGACGATGCTAAGTGCGTCGGAAGAAG------GGGGCCATTATG-TGCTTGAT- 1365
                       *   **** **    ***   *  * ****       ****  **  *  ***  *** 

consensus_9098#0      AAAAATGTCAGTTTGTTCCATTACCCGAGTTGGGGATAAGATGTAGACAGTTGATGTTAT 1481
consensus_9098#1      ATGTTTGTT-GTTTGATTTGTT-CCTGAACTGTCTCTGAAAC-TGGA-AGTGTAACATGT 1421
                      *    ***  ***** *   ** ** **  **    * * *  * ** ***  *   * *

consensus_9098#0      TGGCCTCACACTCTAGTCATGTCTCTTATGATGGATCGATCCATATGAGTTGATTCCTCA 1541
consensus_9098#1      TGTCCCAAG----TAGT-ATGTGTC---------ATCAGGCTATATGGTTGAATGAGTCC 1467
                      ** **  *     **** **** **         ***   * *****  *  **   ** 

consensus_9098#0      CAACAGTAGCATCTATTTGCATCACTGAATTTGTTCATTCTAGTCATAAATAGTTGTGAC 1601
consensus_9098#1      AAGTTTCAGTCTTTGCTTG------TAGATAGGTGTCACATGAATGGAAAAAAAAACAAA 1521
                       *     **  * *  ***      *  **  **      *      *** *      * 

consensus_9098#0      AAATTGATATTACATCCGTCCCAAAATAAGTGCAGTCGTAGGGAACCGTGTCCGACGTTT 1661
consensus_9098#1      AAAAGGCAGTTCTTTTTGTCTAAAAAA--------------------------------- 1548
                      ***  *   **   *  ***  ****                                  

consensus_9098#0      GACCGTTCGTCTTATTTG 1679
consensus_9098#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)