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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1466 fasta sequence
[GCGGCGGCGGCGCGGCGGCGGNGGTGGACCCNNAGGCGGCGACGNAGCTGGTGCGGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGT-GGCATGCACAGGAGGAGAGATTAATAAAACTACCAGAAGAGGAGGAAATCAGATATTCTGAAGCAGTAAGACATTTCGAGTTTGACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCAAGCTACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATTGCATGGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATGGACCAACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTAAAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGA--TGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAA-ATTCCTGTTTGTAAATATACGA-AGA-ATAATTTCTCTTTGCACTA-AGCGGTCTATCTTGTACTAGTACGCTATTTACCGAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTAGTACTTCCAGTAAAGTTCTTATCCAAAAAAAA]
[+] EMBL OSR1977A [GCGGCGGCGGCGCGGCGGCGGNGGTGGACCCNNAGGCGGCGACGNAGCTGGTGCGGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAAGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAANATNGTGCCTCCGGGGCCGNATTTCCTCTACTACTGCTCCCCCAACAGGCACGNAAATNAGTTCGCACCTACTGTNGNATTCTTTCTTACTACTCACCCATCTNAGGTAATTATTCGGAAGT GGCATNCACAGGAGGAGAGATTAATAAAACTACCAGANGANGAGGAAAT ]
[+] EMBL AK121974 [ GGCGGCGGCGCGGCGGCGGCGGTGGACCCGGAGGCGGCGACGGAGCTGGTGCGGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGT GGCATGCACAGGAGGAGAGATTAATAAAACTACCAGAAGAGGAGGAGATCAGATATTCTGAAGCAGTAAGACATTTCGAGTTTGACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCAAGCTACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATTGCATGGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATGGACCAACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTAAAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGA TGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAA ATTCCTGTTTGTAAATATACGA AGA ATAATTTCTCTTTGCACTA AGCGGTCTATCTTGTACTAGTACGCTATTTACCGAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTC ]
[+] EMBL OSS4018A [ CGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGTGGGCATGCACAGGAGGAGAGATTAATAAAACTACCAGAAGAGGAGG AATCAGATATTCTGAAG ]
[+] EMBL AU173273 [ ATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGA TGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAA ATTCCTGTTTGTAAATATACGA AGA ATAATTTCTCTTTGCACTA AGCGGTCTATCTTGTACTAGTACGCTATTTACCGAGCCTTTTATCTTNTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTAGTACTTCCAGTAAAGTTCTTATCCAAAAAAAA]
[+] EMBL AU161659 [ AAGAATTGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAANATTCCTGTTTGTAAATATACGAGAGANATAATTTCTCTTTGCACTANAGCGGTCTATCTTGTACTAaaaaaaaa ]
consensusID : consensus_9101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence
[AGGACGAGACAAGGGGGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTTTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGTTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAAAGACATATTTCTCTATCATCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATNCCTGGNTTCCTAAACTCCTGGTTGTAAATATACGAAGAATAATTTCTCTTTGCCCTNAAGCGGGCTATCTTGGACTAGNACGCTATTTACCCGAGCCTTTTAT]
[+] EMBL CA765070 [AGGACGAGACAAGGGGGGAGAGGATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTTTGGGGATGAGCTAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAACTCAAGCATGGTTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAAAGACATATTTCTCTATCATCTTTCTAAGGATTTCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATCTAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATNCCTGGNTTCCTAAACTCCTGGTTGTAAATATACGAAGAATAATTTCTCTTTGCCCTNAAGCGGGCTATCTTGGACTAGNACGCTATTTACCCGAGCCTTTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9101#0 GCGGCGGCGGCGCGGCGGCGGNGGTGGACCCNNAGGCGGCGACGNAGCTGGTGCGGAAGG 60
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 GCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACCCAGG 120
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 TGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCATTTCC 180
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 TCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTCTTTC 240
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 TTACTACTCACCCATCTGAGGTGATTGTTCGGAAGTGGCATGCACAGGAGGAGAGATTAA 300
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 TAAAACTACCAGAAGAGGAGGAAATCAGATATTCTGAAGCAGTAAGACATTTCGAGTTTG 360
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 ACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCAAGCT 420
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 ACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATTGCAT 480
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 GGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATGGACC 540
consensus_9101#1 ------------------------------------------------------------
consensus_9101#0 AACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGATGCT 600
consensus_9101#1 --------------------------------AGGACGAGACAAGGGGGGAGAGGATGCT 28
* * * ************
consensus_9101#0 ACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTAACTG 660
consensus_9101#1 ACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTTTGGGGATGAGCTAACTG 88
****************************************** *****************
consensus_9101#0 CATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCC 720
consensus_9101#1 CATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAAGGCC 148
************************************************************
consensus_9101#0 AAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGT 780
consensus_9101#1 AAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGGCAGT 208
************************************************************
consensus_9101#0 CACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAG 840
consensus_9101#1 CACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGTGAAG 268
************************************************************
consensus_9101#0 CTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAAC 900
consensus_9101#1 CTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTATCAAC 328
************************************************************
consensus_9101#0 TCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTC 960
consensus_9101#1 TCAAGCATGGTTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAATTCTC 388
********** *************************************************
consensus_9101#0 TGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAGGATT 1020
consensus_9101#1 TGTTCTTAGATGAAGCATGGTTTTCAAAAGACATATTTCTCTATCATCTTTCTAAGGATT 448
*************************** ***************** **************
consensus_9101#0 TCTTTGCGGTGATACTTGAAGCTAAAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAA 1080
consensus_9101#1 TCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACTCGAA 508
************************ ***********************************
consensus_9101#0 AACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATC 1140
consensus_9101#1 AACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTGAATC 568
************************************************************
consensus_9101#0 TAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTC 1200
consensus_9101#1 TAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAGACTC 628
************************************************************
consensus_9101#0 AGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAA 1260
consensus_9101#1 AGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGCATACAA 688
************************************************************
consensus_9101#0 GATTACAAGTAGGGCTTTCTTGGCAGTATGTATCC-TGGTTTCCTAAATTCCTGTTTGTA 1319
consensus_9101#1 GATTACAAGTAGGGCTTTCTTGGCAGTATGTATNCCTGGNTTCCTAAACTCCTGGTTGTA 748
********************************* * *** ******** ***** *****
consensus_9101#0 AATATACGAAGAATAATTTCTCTTTGCACTAA-GCGGTCTATCTTGTACTAGTACGCTAT 1378
consensus_9101#1 AATATACGAAGAATAATTTCTCTTTGCCCTNAAGCGGGCTATCTTGGACTAGNACGCTAT 808
*************************** ** * **** ******** ***** *******
consensus_9101#0 TTACC-GAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTAGTA 1437
consensus_9101#1 TTACCCGAGCCTTTTAT------------------------------------------- 825
***** ***********
consensus_9101#0 CTTCCAGTAAAGTTCTTATCCAAAAAAAA 1466
consensus_9101#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||