Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9106 cluster # 9106       Sequences # 6       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9106#0 length = 1059 sequences # 6  
consensusID : consensus_9106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1059
fasta sequence 
                              [GAGTAGAAAGTCTTGTTCTTCTCCTCATCCACGGCGAGGGGGCGTCCCCTCGAGCTCGCGGGTCTCTCGTCTCCTCGATGGCGGTGTCGCCGTGGAGCTGCCGCTGTGGGGTCAGCCGCTCCCCCGGAAAGAGCAGAGGCGCACCGGCACCTTCTTCTCCTGACAAGAGATCCAAGTACTCGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGAAAGAAGAGGTCTCGAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTGAGGACACACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGGCAGAAGACATGGCAATGATGCTGCAGCTCAAGCCTGAAGACTTCGTGGTTGTGCTGGATGAAAACGGGAAGGATGTCACGTCTGAGCAGGTAGCTGATCTGGTCGGGGATGCTGGGAACACGGGGTCGTCAAGGCTCACATTTTGTATTGGTGGACCGTATGGTTTTGGGCTACAAGTGCGAGAGCGTGCAGATGCAACAATTAGACTATCCTCAATGGTTTTGAATCATCAAGTTGCCTTGATAGTTCTAATGGAGCAGCTCTACAGGGCATGGACTATAATCAAAGGACAGAAGTATCACCACTAGCCACTAGAATTGAGTTGCATTGGCGTCATGTTGCGCACTTGAACAGATGGAAAATTGGAAGTGCAGGACATGGAGATCGTAATTCATAAACGCATCAGCTTTCAGATTTGGAGGCTTGGAGCACACGGCGCATTTTTGCTTGGTGATTCACTGATTCTACAACAAAGGCACACCAGAGGGTCGAACATTGGTTGTAATCAATGCAGCGTATAGGCATTGTAGTCCGTAGATTGTATAGCGCAGAGATCTCCCATATATCAATTTTTCAGCAGTTTAGACAAATCTTTGTTCTGCTTATACTCGCGAAACTGCTATTCATGTACAATGCTTTCAATTGCACTCCAAGTGAGCACAAAGCAACGAAAACGCTTTACAAAAAAATCAAAAAAAA]

[+] EMBL CF293071             [GAGTAGAAAGTCTTGTTCTTCTCCTCATCCACGGCGAGGGGGCGTCCCCTCGAGCTCGCGGGTCTCTCGTCTCCTCGATGGCGGTGTCGCCGTGGAGCTGCCGCTGTGGGGTCAGCCGCTCCCCCGGAAAGAGCAGAGGCGCACCGGCACCTTCTTCTCCTGACAAGAGATCCAAGTACTCGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGAAAGAAGAGGTCTCGAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTGAGGACACACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGGCAGAAGACATGGCAATGATGCTGCAGCTCAAGCCTGAAGACTTCGTGGTTGTGCTGGATGAAAACGGGAAGGATGTCACGTCTGAGCAGGTAGCTGATCTGGTCGGGGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK122125             [                      CCTCATCCACGGCGAGGGGGCGTCCCCTCGAGCTCGCGGGTCTCTCGTCTCCTCGATGGCGGTGTCGCCGTGGAGCTGCCGCTGTGGGGTCAGCCGCTCCCCCGGAAAGAGCAGAGGCGCACCGGCACCTTCTTCTCCTGACAAGAGATCCAAGTACTCGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGAAAGAAGAGGTCTCGAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTGAGGACACACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGGCAGAAGACATGGCAATGATGCTGCAGCTCAAGCCTGAAGACTTCGTGGTTGTGCTGGATGAAAACGGGAAGGATGTCACGTCTGAGCAGGTAGCTGATCTGGTCGGGGATGCTGGGAACACGGGGTCGTCAAGGCTCACATTTTGTATTGGTGGACCGTATGGTTTTGGGCTACAAGTGCGAGAGCGTGCAGATGCAACAATTAGACTATCCTCAATGGTTTTGAATCATCAAGTTGCCTTGATAGTTCTAATGGAGCAGCTCTACAGGGCATGGACTATAATCAAAGGACAGAAGTATCACCACTAGCCACTAGAATTGAGTTGCATTGGCGTCATGTTGCGCACTTGAACAGATGGAAAATTGGAAGTGCAGGACATGGAGATCGTAATTCATAAACGCATCAGCTTTCAGATTTGGAGGCTTGGAGCACACGGCGCATTTTTGCTTGGTGATTCACTGATTCTACAACAAAGGCAAACCAGAGGGTCGAACATTGGTTGTAATCAATGCAGCGTATAGGCATTGTAGTCCGTAGATTGTATAGCGCAGAGATCTCCCATATATCAATTTTTC                                                                                                                            ]
[+] EMBL OSS12119A            [                                 GCGAGGGGGCGTCCCCTCGAGCTCGCGGGTCTCTCGTCTCCTCGATGGCGGTGTCGCCGTGGAGCTGCCGCTGTGGGGNCAGCCGCTCCCCCGGAAAGAGCAGAGGCGCACCGGCACCTTCTTCTCCTGACAAGAGATCCAAGTACTCGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGAAAGAAGAGGTCTCGAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTGAGGACACACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGGCAGAAGGCATGGCAATGATGCTGCAGCTCAAGCCTNAAGACTTCGTGGTTGTNCTGGATGAAAACGGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK060169             [                                   GAGGGGGCGTCCCCTCGAGCTCGCGGGTCTCTCGTCTCCTCGATGGCGGTGTCGCCGTGGAGCTGCCGCTGTGGGGTCAGCCGCTCCCCCGGAAAGAGCAGAGGCGCACCGGCACCTTCTTCTCCTGACAAGAGATCCAAGTACTCGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGAAAGAAGAGGTCTCGAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTGAGGACACACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGGCAGAAGACATGGCAATGATGCTGCAGCTCAAGCCTGAAGACTTCGTGGTTGTGCTGGATGAAAACGGGAAGGATGTCACGTCTGAGCAGGTAGCTGATCTGGTCGGGGATGCTGGGAACACGGGGTCGTCAAGGCTCACATTTTGTATTGGTGGACCGTATGGTTTTGGGCTACAAGTGCGAGAGCGTGCAGATGCAACAATTAGACTATCCTCAATGGTTTTGAATCATCAAGTTGCCTTGATAGTTCTAATGGAGCAGCTCTACAGGGCATGGACTATAATCAAAGGACAGAAGTATCACCACTAGCCACTAGAATTGAGTTGCATTGGCGTCATGTTGCGCACTTGAACAGATGGAAAATTGGAAGTGCAGGACATGGAGATCGTAATTCATAAACGCATCAGCTTTCAGATTTGGAGGCTTGGAGCACACGGCGCATTTTTGCTTGGTGATTCACTGATTCTACAACAAAGGCACACCAGAGGGTCGAACATTGGTTGTAATCAATGCAGCGTATAGGCATTGTAGTCCGTAGATTGTATAGCGCAGAGATCTCCCATATATCAATTTTTCAGCAGTTTAGACAAATCTTTGTTCTGCTTATACTCGCGAAACTGCTATTCATGTACAATGCTTTCAATTGCACTCCAAGTGAGCACAAAGCAACGAAAACGCTTTA                  ]
[-] EMBL CF293072             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTATAATCAAAGGACAGAAGTATCACCACTAGCCACTAGAATTGAGTTGCATTGGCGTCATGTTGCGCACTTGAACAGATGGAAAATTGGAAGTGCAGGACATGGAGATCGTAATTCATAAACGCATCAGCTTTCAGATTTGGAGGCTTGGAGCACACGGCGCATTTTTGCTTGGTGATTCACTGATTCTACAACAAAGGCACACCAGAGGGTCGAACATTGGTTGTAATCAATGCAGCGTATAGGCATTGTAGTCCGTAGATTGTATAGCGCAGAGATCTCCCATATATCAATTTTTCAGCAGTTTAGACAAATCTTTGTTCTGCTTATACTCGCGAAACTGCTATTCATGTACAATGCTTTCAATTGCACTCCAAGTGAGCACAAAGCAACGAAAACGCTTTACAAAAAA           ]
[+] EMBL AU096080             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAATTGAGTTGCATTGGCGTCATGTTGCGCACTTGAACAGATGGAAAATTGGAAGTGCAGGACATGGAGATCGTAATTCATAAACGCATCAGCTTTCAGATTTGGAGGCTTGGAGCACACGGCGCATTTTTGCTTGGTGATTCACTGATTCTACAACAAAGGCACACCAGAGGGTCGAACATTGGTTGTAATCAATGCAGCGTATAGGCATTGTAGTCCGTAGATTGTATAGCGCAGAGATCTCCCATATATCAATTTTTCAGCAGTTTAGACAAATCTTTGTTCTGCTTATACTCGCGAAACTGCTATTCATGTACAATGCTTTCAATTGCACTCCAAGTGAGCACAAAGCAACGAAAACGCTTTACAAGAAGATCAAAAAAAA]




>consensus_9106#0
GAGTAGAAAGTCTTGTTCTTCTCCTCATCCACGGCGAGGGGGCGTCCCCTCGAGCTCGCG
GGTCTCTCGTCTCCTCGATGGCGGTGTCGCCGTGGAGCTGCCGCTGTGGGGTCAGCCGCT
CCCCCGGAAAGAGCAGAGGCGCACCGGCACCTTCTTCTCCTGACAAGAGATCCAAGTACT
CGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGAAAGAAGAGGTCTC
GAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTG
AGGACACACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGG
CAGAAGACATGGCAATGATGCTGCAGCTCAAGCCTGAAGACTTCGTGGTTGTGCTGGATG
AAAACGGGAAGGATGTCACGTCTGAGCAGGTAGCTGATCTGGTCGGGGATGCTGGGAACA
CGGGGTCGTCAAGGCTCACATTTTGTATTGGTGGACCGTATGGTTTTGGGCTACAAGTGC
GAGAGCGTGCAGATGCAACAATTAGACTATCCTCAATGGTTTTGAATCATCAAGTTGCCT
TGATAGTTCTAATGGAGCAGCTCTACAGGGCATGGACTATAATCAAAGGACAGAAGTATC
ACCACTAGCCACTAGAATTGAGTTGCATTGGCGTCATGTTGCGCACTTGAACAGATGGAA
AATTGGAAGTGCAGGACATGGAGATCGTAATTCATAAACGCATCAGCTTTCAGATTTGGA
GGCTTGGAGCACACGGCGCATTTTTGCTTGGTGATTCACTGATTCTACAACAAAGGCACA
CCAGAGGGTCGAACATTGGTTGTAATCAATGCAGCGTATAGGCATTGTAGTCCGTAGATT
GTATAGCGCAGAGATCTCCCATATATCAATTTTTCAGCAGTTTAGACAAATCTTTGTTCT
GCTTATACTCGCGAAACTGCTATTCATGTACAATGCTTTCAATTGCACTCCAAGTGAGCA
CAAAGCAACGAAAACGCTTTACAAAAAAATCAAAAAAAA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)