cluster # 9118

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Oryza sativa
cluster # 9118 cluster # 9118 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9118#0 length = 774 sequences # 4

consensus_9118#1 length = 347 sequences # 2

consensusID : consensus_9118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 774
fasta sequence

                              [CAGGCAATTCGATTCTTCTTGATGTTGGTCTTTGGTTATCTCAAAAGATAAAAGAGCATTTCAAGAAAATCAAGACTACTATAAATCTCAAGTATATAGATCCTACATACATGATACGTGCCATTCCTAGCAATGCATCTGACAATGTGTATTGCACACTGTTGGCACACAGTGTGGTTCATGGAGCCATGGCTGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGCTATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGTGGGCAAGACTTCTCTCCTCAACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGGACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCAAGGTTGAAGACAAAGTCGCTTCCAATGGCAAGGCTGTGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATATGT-CTATATTGCGGTAATGTTCAAGAACCATAAAAGGGA]

[+] EMBL AK058759             [CAGGCAATTCGATTCTTCTTGATGTTGGTCTTTGGTTATCTCAAAAGATAAAAGAGCATTTCAAGAAAATCAAGACTACTATAAATCTCAAGTATATAGATCCTACATACATGATACGTGCCATTCCTAGCAATGCATCTGACAATGTGTATTGCACACTGTTGGCACACAGTGTGGTTCATGGAGCCATGGCTGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGCTATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGTGGGCAAGACTTCTCTCCTCAACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGGACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCAAGGTTGAAGACAAAGTCGCTTCCAATGGCAAGGCTGTGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATATGT CT                                  ]
[-] EMBL CB659683             [                                               ATAAAAGAGCATTTCAAGAAAATCAAGACTACTATAAATCTCAAGTATATAGATCCTACATACATGATACGTGCCATTCCTAGCAATGCATCTGACAATGTGTATTGCACACTGTTGGCACACAGTGTGGTTCATGGAGCCATGGCTGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGCTATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGTGGGCAAGACTTCTCTCCTCAACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGGACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCAAGGTTGAAGACAAAGTCGCTTCCAATGGCAAGGCTGTGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAAAGGGATATGT CTATATTGCGGTAATGTTCAAGAACCATAAAAGGGA]
[-] EMBL CB626512             [                                                                     TCAAGGCAACTATAAATCTCAAGTATATAGATCCTACATACATGATACGTGCCATTCCTAGCAATGCATCTGACAACGTGTATTGCACACTGTTGGCACACAGTGTGGTTCATGGAGCCATGGCGGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGCTATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGTGGGCAAGATTTTTCTCCTCAACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGGACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCAAGGTTGAAGACAAAGTCGCTTCCAATGGCAAGGCTGTGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTTCTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTTATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGATAGGCATCTCTTGGAATGCTATAATTTTTTTTCCCATCTAATGTGATATGT CTA                                 ]
[-] EMBL CF297477             [                                                                                                                                                                                                                                                                                                                                                                          GCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCAAGGTTGAAGACAAAGTCGCTTCCAATGGCAAGACTGTGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGGTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGTTCAGCTCTTCCTGTCCCAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTCACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATATGTCCTATACTGCGGTAAaaaaa                 ]




>consensus_9118#0
CAGGCAATTCGATTCTTCTTGATGTTGGTCTTTGGTTATCTCAAAAGATAAAAGAGCATT
TCAAGAAAATCAAGACTACTATAAATCTCAAGTATATAGATCCTACATACATGATACGTG
CCATTCCTAGCAATGCATCTGACAATGTGTATTGCACACTGTTGGCACACAGTGTGGTTC
ATGGAGCCATGGCTGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGCT
ATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGT
GGGCAAGACTTCTCTCCTCAACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGG
ACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCA
AGGTTGAAGACAAAGTCGCTTCCAATGGCAAGGCTGTGAAGTGAGGCAGAAGGCTACTGA
TCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTA
GTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCT
GTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATG
TTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTC
ACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATAAAAGGGA

consensusID : consensus_9118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 347
fasta sequence

                              [CATGGACTGCAGGAGTAGAAAGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATGGAACATTGTTCAAAAA]

[+] EMBL CF310491             [CATGGACTGCAGGAGTAGAAAGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATGGAACATTGTTCAAAA ]
[-] EMBL CF310492             [ ATGGACTGCAGGAGTAGAAAGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATGGAACA TGTTCAAAAA]




>consensus_9118#1
CATGGACTGCAGGAGTAGAAAGAAGTGAGGCAGAAGGCTACTGATCTATTATGTGCAGAT
GGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTAGTGAGATGGATTAGTA
AATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCTGTCCAAATTAAAATGC
CGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATGTTACTGCTGTTTGCTT
GCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTCACATCTAATGTGATAT
GTCTATATTGCGGTAATGTTCAAGAACCATGGAACATTGTTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9118#0      CAGGCAATTCGATTCTTCTTGATGTTGGTCTTTGGTTATCTCAAAAGATAAAAGAGCATT 60
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      TCAAGAAAATCAAGACTACTATAAATCTCAAGTATATAGATCCTACATACATGATACGTG 120
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      CCATTCCTAGCAATGCATCTGACAATGTGTATTGCACACTGTTGGCACACAGTGTGGTTC 180
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      ATGGAGCCATGGCTGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGCT 240
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      ATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGT 300
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      GGGCAAGACTTCTCTCCTCAACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGG 360
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      ACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCGATGGGCCGCCTCCCAACCCCA 420
consensus_9118#1      ------------------------------------------------------------
                                                                                  

consensus_9118#0      AGGTTGAAGACAAAGTCGCTTCCAATGGCAAGGCTGTGAAGTGAGGCAGAAGGCTACTGA 480
consensus_9118#1      -------------CATGGACTGCAGGAGTAGAA---AGAAGTGAGGCAGAAGGCTACTGA 44
                                     * *  * **   * *       ***********************

consensus_9118#0      TCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTA 540
consensus_9118#1      TCTATTATGTGCAGATGGATTAATTATTACTCAATAATGTCAGTAATCTATCTATGGCTA 104
                      ************************************************************

consensus_9118#0      GTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCT 600
consensus_9118#1      GTGAGATGGATTAGTAAATAATATTAGTATATCTATGGCAAGTGATGCTCAGCTCTTCCT 164
                      ************************************************************

consensus_9118#0      GTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATG 660
consensus_9118#1      GTCCAAATTAAAATGCCGAGAATAGATCTCCTCTAGCAGGTTATCGTCATTATATTTATG 224
                      ************************************************************

consensus_9118#0      TTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTC 720
consensus_9118#1      TTACTGCTGTTTGCTTGCTGTTTATGGTAGGCATCTCTTGGAATGCTATAATTTTTTTTC 284
                      ************************************************************

consensus_9118#0      ACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATAAAAGGGA------ 774
consensus_9118#1      ACATCTAATGTGATATGTCTATATTGCGGTAATGTTCAAGAACCATGGAACATTGTTCAA 344
                      **********************************************  **          

consensus_9118#0      ---
consensus_9118#1      AAA 347