These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2055 fasta sequence [TCGTCGTCTCCCTCGCCGGCCGCGACGCCACGCACCAATTCTCCGATTCGTCGAGGAGCCGAGGAGGAATCCCAGCCTCGAGTCGCGCCCCTGATCCTCCAGGCTCCATCGATCCGAGGAGGAGGGGCGCGCGCGGGATTCCGTCGTCGGATTGGGTTGGGTTCGCGGATGATGGGGGCGGAGAAGGCGGAGGGGATGGAGGAGCTGGAGCTGGAGGAGGGCGGGGGCTCGCCGTCTCCGTCGCCGATGACGGCCGCCGGGAAGATGCAGGCGCTGGACTTCGAGCACATCGGGTCGCTCGCCGCGGTGGCGGAGTCGCTCTCGACGGGGAGCAAGTGGCGGAGGGCGCTCACCAGCGTGCGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTCATGCTCCACTACCTCTCCGCCAACCACCAAGGATGGGTTTTCCTTTTCAGCTTAATCGGCATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAGCAGCTTGCTCTCTACACGGGTCCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCGTTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGGCGTCAGCCGT-TGTAAACTCAGGATTGCTTTTGATGGCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTATGGAAAATCCGAAGTTTCCCTTTCAAGGTTTAGTAGCTGCATCATGCTTGTGGCATATGCAAGCTATCTGTTTTTTCAACTAAAGAGCCAGCGAAGTCTGTACAGTCCAATTGGTGAACAGGAAGAAGAAGTAACTGAGGATGAGGAGGAAGAAAAGGAGATAACACAGGGTGAAGCTATCTGTTGGCTTTTTGTGTTGACTATTTGGATTTCGATTCTCTCTGGGTACCTGGTAGACGCCATACAGGGGGCCTCTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGTGATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCAACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGAAGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA---GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATAATTTA-TTTGTCTAGGATGGGTTGCTCGTTTTTGAATGCTTGCTTGCTTATAAGAGAACATGGTTCTAGACTTTTANAGACTGCTCATCAAACTAACCATGGCNTGTNCTGGNGAGGGGAAAATCATTTCAGACT] [+] EMBL AK069928 [TCGTCGTCTCCCTCGCCGGCCGCGACGCCACGCACCAATTCTCCGATTCGTCGAGGAGCCGAGGAGGAATCCCAGCCTCGAGTCGCGCCCCTGATCCTCCAGGCTCCATCGATCCGAGGAGGAGGGGCGCGCGCGGGATTCCGTCGTCGGATTGGGTTGGGTTCGCGGATGATGGGGGCGGAGAAGGCGGAGGGGATGGAGGAGCTGGAGCTGGAGGAGGGCGGGGGCTCGCCGTCTCCGTCGCCGATGACGGCCGCCGGGAAGATGCAGGCGCTGGACTTCGAGCACATCGGGTCGCTCGCCGCGGTGGCGGAGTCGCTCTCGACGGGGAGCAAGTGGCGGAGGGCGCTCACCAGCGTGCGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTCATGCTCCACTACCTCTCCGCCAACCACCAAGGATGGGTTTTCCTTTTCAGCTTAATCGGCATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAGCAGCTTGCTCTCTACACGGGTCCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCGTTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGGCGTCAGCCGT TGTAAACTCAGGATTGCTTTTGATGGCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTATGGAAAATCCGAAGTTTCCCTTTCAAGGTTTAGTAGCTGCATCATGCTTGTGGCATATGCAAGCTATCTGTTTTTTCAACTAAAGAGCCAGCGAAGTCTGTACAGTCCAATTGGTGAACAGGAAGAAGAAGTAACTGAGGATGAGGAGGAAGAAAAGGAGATAACACAGGGTGAAGCTATCTGTTGGCTTTTTGTGTTGACTATTTGGATTTCGATTCTCTCTGGGTACCTGGTAGACGCCATACAGGGGGCCTCTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGTGATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCAACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGAAGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATAATTTA TTTGTCTAGGATGGGTTGCTCGTTTTTGAATGCTTGCTTGCTTATAAGAGAAC ] [+] EMBL AU102053 [ CAGCTTGCTCTCTACACGGGTCCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCGTTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGGCGTCA CGTCTGTAAACTCAGGATTGCTTTTGATGGCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTATGGAAAATCCGAAGTTTCCC TTCAAGG TTAGTAGCTGCATCATGCTTGTGGCATATGCAAGCTATC ] [+] EMBL CA763967 [ ACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGGAGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGGTCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGNTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTTCAAACGGTGCCAGNTGTGCAACATGATTTGTCACTGCACATAANTTATTTTGTCTAGGATGGGNTGCTCGGTTTTGAATGCTTGCTTGCTTATAANANAACATGGTTCTAGACTTTTANAGACTGCTCATCAAACTAACCATGGCNTGTNCTGGNGAGGGGAAAATCATTTCAGACT] [+] EMBL CF322441 [ TTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAACAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGAT ] [+] EMBL CA757113 [ TCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATAATTTA TTTGTCTA ] consensusID : consensus_9119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TATCTGTTGGCTTTTTGTGTTGNCTATTTGGATTTCGATTCTCTCTGGGTNCCTGGTAGACNCCATACAGGTNTTGAAGAGTTCGTTGAAGATTACATCATGCCTGTTATATGTTGCTCCCNTCAGACCTGGATTTCGCTAGTTACTTNCCTTTATTATTTGCTGCTTCTATGCCATATTAAGCGAGGAAATNTATTTTTTACCCTTTAACATTGCATCATTCATATGTTATAACAGGGGGCCTNTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGTAAGGAACCAAAGGATACTATTTCAATATGGTTTATATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU102054 [TATCTGTTGGCTTTTTGTGTTGNCTATTTGGATTTCGATTCTCTCTGGGTNCCTGGTAGACNCCATACAGGTNTTGAAGAGTTCGTTGAAGATTACATCATGCCTGTTATATGTTGCTCCCNTCAGACCTGGATTTCGCTAGTTACTTNCCTTTATTATTTGCTGCTTCTATGCCATATTAAGCGAGGAAATNTATTTTTTACCCTTTAACATTGCATCATTCATATGTTATAACAGGGGGCCTNTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGTAAGGAACCAAAGGATACTATTTCAATATGGTTTATATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9119#0 TCGTCGTCTCCCTCGCCGGCCGCGACGCCACGCACCAATTCTCCGATTCGTCGAGGAGCC 60 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GAGGAGGAATCCCAGCCTCGAGTCGCGCCCCTGATCCTCCAGGCTCCATCGATCCGAGGA 120 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GGAGGGGCGCGCGCGGGATTCCGTCGTCGGATTGGGTTGGGTTCGCGGATGATGGGGGCG 180 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GAGAAGGCGGAGGGGATGGAGGAGCTGGAGCTGGAGGAGGGCGGGGGCTCGCCGTCTCCG 240 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 TCGCCGATGACGGCCGCCGGGAAGATGCAGGCGCTGGACTTCGAGCACATCGGGTCGCTC 300 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GCCGCGGTGGCGGAGTCGCTCTCGACGGGGAGCAAGTGGCGGAGGGCGCTCACCAGCGTG 360 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 CGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTC 420 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 ATGCTCCACTACCTCTCCGCCAACCACCAAGGATGGGTTTTCCTTTTCAGCTTAATCGGC 480 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 ATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAGCAGCTTGCTCTCTACACGGGT 540 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 CCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCG 600 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 TTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATA 660 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 CTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCC 720 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 AGCAGGGACCAGGTCTTCAACAAGGCGTCAGCCGTTGTAAACTCAGGATTGCTTTTGATG 780 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTAT 840 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GGAAAATCCGAAGTTTCCCTTTCAAGGTTTAGTAGCTGCATCATGCTTGTGGCATATGCA 900 consensus_9119#1 ----TATCTG----TTGGCTTTTTGTGTTGNCTATTTGGATTTCGATTCTCTC-----TG 47 *** * ** **** *** ** ** ** * ** * * consensus_9119#0 AGCTATCTGTTTTTTCAACTAAAGAGCCAGCGAAGTCTGTACAGTCCAATTGGTGAACAG 960 consensus_9119#1 GGTNCCTGGTAGACNCCATACAGGTNTTGAAGAGTTCGTTGAAGATTACATCATGCCTGT 107 * ** * * * * ** ** * ** * * ** consensus_9119#0 GAAGAAGAAGTAACTGAGGATGAGGAGGAAGAAAAGGAGATAACACAGGGTGAAGCTATC 1020 consensus_9119#1 TATATGTTGCTCCCNTCAGACCTGGATTTCGCTAGTTACTTNCCTTTATTATTTGCTGCT 167 * * * ** *** * * * * * *** consensus_9119#0 TGT-TGGCTTTTTGTGTTGACTATTTGGATTTCGATTCTCTCTGGGTACCTGGT--AGAC 1077 consensus_9119#1 TCTATGCCATATTAAGCGAGGAAATNTATTTTTTACCCTTTAACATTGCATCATTCATAT 227 * * ** * * ** * * * *** * ** * * * * * * * consensus_9119#0 GCCATA-CAGGGGGCCTCTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCT 1136 consensus_9119#1 GTTATAACAGGGGGCCTNTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCT 287 * *** ********** ****************************************** consensus_9119#0 GCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGA 1196 consensus_9119#1 GCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGA 347 ************************************************************ consensus_9119#0 CAAACTTGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGT 1256 consensus_9119#1 CAAACTTG-TAAGGAACCAAAGGATACTATT------TCAATAT-GGTTTATATGTTAAA 399 ******** ** ** * * * ** **** * * * * ***** consensus_9119#0 GATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCA 1316 consensus_9119#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 431 * * ** * ** consensus_9119#0 ACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGA 1376 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 AGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGC 1436 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GAGCTTCTTCGTACATGTTGATCCCGATTCAAGTAACAACAAGTGAAAGATCCGCAACAA 1496 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 TTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTT 1556 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTC 1616 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 ACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGA 1676 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 TAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGT 1736 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTG 1796 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 TTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGG 1856 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 ACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGC 1916 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 ACATAATTTATTTGTCTAGGATGGGTTGCTCGTTTTTGAATGCTTGCTTGCTTATAAGAG 1976 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 AACATGGTTCTAGACTTTTANAGACTGCTCATCAAACTAACCATGGCNTGTNCTGGNGAG 2036 consensus_9119#1 ------------------------------------------------------------ consensus_9119#0 GGGAAAATCATTTCAGACT 2055 consensus_9119#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||