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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2055 fasta sequence
[TCGTCGTCTCCCTCGCCGGCCGCGACGCCACGCACCAATTCTCCGATTCGTCGAGGAGCCGAGGAGGAATCCCAGCCTCGAGTCGCGCCCCTGATCCTCCAGGCTCCATCGATCCGAGGAGGAGGGGCGCGCGCGGGATTCCGTCGTCGGATTGGGTTGGGTTCGCGGATGATGGGGGCGGAGAAGGCGGAGGGGATGGAGGAGCTGGAGCTGGAGGAGGGCGGGGGCTCGCCGTCTCCGTCGCCGATGACGGCCGCCGGGAAGATGCAGGCGCTGGACTTCGAGCACATCGGGTCGCTCGCCGCGGTGGCGGAGTCGCTCTCGACGGGGAGCAAGTGGCGGAGGGCGCTCACCAGCGTGCGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTCATGCTCCACTACCTCTCCGCCAACCACCAAGGATGGGTTTTCCTTTTCAGCTTAATCGGCATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAGCAGCTTGCTCTCTACACGGGTCCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCGTTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGGCGTCAGCCGT-TGTAAACTCAGGATTGCTTTTGATGGCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTATGGAAAATCCGAAGTTTCCCTTTCAAGGTTTAGTAGCTGCATCATGCTTGTGGCATATGCAAGCTATCTGTTTTTTCAACTAAAGAGCCAGCGAAGTCTGTACAGTCCAATTGGTGAACAGGAAGAAGAAGTAACTGAGGATGAGGAGGAAGAAAAGGAGATAACACAGGGTGAAGCTATCTGTTGGCTTTTTGTGTTGACTATTTGGATTTCGATTCTCTCTGGGTACCTGGTAGACGCCATACAGGGGGCCTCTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGTGATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCAACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGAAGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA---GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATAATTTA-TTTGTCTAGGATGGGTTGCTCGTTTTTGAATGCTTGCTTGCTTATAAGAGAACATGGTTCTAGACTTTTANAGACTGCTCATCAAACTAACCATGGCNTGTNCTGGNGAGGGGAAAATCATTTCAGACT]
[+] EMBL AK069928 [TCGTCGTCTCCCTCGCCGGCCGCGACGCCACGCACCAATTCTCCGATTCGTCGAGGAGCCGAGGAGGAATCCCAGCCTCGAGTCGCGCCCCTGATCCTCCAGGCTCCATCGATCCGAGGAGGAGGGGCGCGCGCGGGATTCCGTCGTCGGATTGGGTTGGGTTCGCGGATGATGGGGGCGGAGAAGGCGGAGGGGATGGAGGAGCTGGAGCTGGAGGAGGGCGGGGGCTCGCCGTCTCCGTCGCCGATGACGGCCGCCGGGAAGATGCAGGCGCTGGACTTCGAGCACATCGGGTCGCTCGCCGCGGTGGCGGAGTCGCTCTCGACGGGGAGCAAGTGGCGGAGGGCGCTCACCAGCGTGCGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTCATGCTCCACTACCTCTCCGCCAACCACCAAGGATGGGTTTTCCTTTTCAGCTTAATCGGCATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAGCAGCTTGCTCTCTACACGGGTCCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCGTTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGGCGTCAGCCGT TGTAAACTCAGGATTGCTTTTGATGGCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTATGGAAAATCCGAAGTTTCCCTTTCAAGGTTTAGTAGCTGCATCATGCTTGTGGCATATGCAAGCTATCTGTTTTTTCAACTAAAGAGCCAGCGAAGTCTGTACAGTCCAATTGGTGAACAGGAAGAAGAAGTAACTGAGGATGAGGAGGAAGAAAAGGAGATAACACAGGGTGAAGCTATCTGTTGGCTTTTTGTGTTGACTATTTGGATTTCGATTCTCTCTGGGTACCTGGTAGACGCCATACAGGGGGCCTCTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGTGATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCAACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGAAGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATAATTTA TTTGTCTAGGATGGGTTGCTCGTTTTTGAATGCTTGCTTGCTTATAAGAGAAC ]
[+] EMBL AU102053 [ CAGCTTGCTCTCTACACGGGTCCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCGTTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATACTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCCAGCAGGGACCAGGTCTTCAACAAGGCGTCA CGTCTGTAAACTCAGGATTGCTTTTGATGGCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTATGGAAAATCCGAAGTTTCCC TTCAAGG TTAGTAGCTGCATCATGCTTGTGGCATATGCAAGCTATC ]
[+] EMBL CA763967 [ ACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGGAGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGGTCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGNTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTTCAAACGGTGCCAGNTGTGCAACATGATTTGTCACTGCACATAANTTATTTTGTCTAGGATGGGNTGCTCGGTTTTGAATGCTTGCTTGCTTATAANANAACATGGTTCTAGACTTTTANAGACTGCTCATCAAACTAACCATGGCNTGTNCTGGNGAGGGGAAAATCATTTCAGACT]
[+] EMBL CF322441 [ TTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAACAGGTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGAT ]
[+] EMBL CA757113 [ TCTCATAGTTGCTGCGAGCTTCTTCGTACATGTTGATCCCGATTCAA GTAACAACAAGTGAAAGATCCGCAACAATTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTTGCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGTGCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATAATTTA TTTGTCTA ]
consensusID : consensus_9119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[TATCTGTTGGCTTTTTGTGTTGNCTATTTGGATTTCGATTCTCTCTGGGTNCCTGGTAGACNCCATACAGGTNTTGAAGAGTTCGTTGAAGATTACATCATGCCTGTTATATGTTGCTCCCNTCAGACCTGGATTTCGCTAGTTACTTNCCTTTATTATTTGCTGCTTCTATGCCATATTAAGCGAGGAAATNTATTTTTTACCCTTTAACATTGCATCATTCATATGTTATAACAGGGGGCCTNTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGTAAGGAACCAAAGGATACTATTTCAATATGGTTTATATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU102054 [TATCTGTTGGCTTTTTGTGTTGNCTATTTGGATTTCGATTCTCTCTGGGTNCCTGGTAGACNCCATACAGGTNTTGAAGAGTTCGTTGAAGATTACATCATGCCTGTTATATGTTGCTCCCNTCAGACCTGGATTTCGCTAGTTACTTNCCTTTATTATTTGCTGCTTCTATGCCATATTAAGCGAGGAAATNTATTTTTTACCCTTTAACATTGCATCATTCATATGTTATAACAGGGGGCCTNTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCTGCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGACAAACTTGTAAGGAACCAAAGGATACTATTTCAATATGGTTTATATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9119#0 TCGTCGTCTCCCTCGCCGGCCGCGACGCCACGCACCAATTCTCCGATTCGTCGAGGAGCC 60
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GAGGAGGAATCCCAGCCTCGAGTCGCGCCCCTGATCCTCCAGGCTCCATCGATCCGAGGA 120
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GGAGGGGCGCGCGCGGGATTCCGTCGTCGGATTGGGTTGGGTTCGCGGATGATGGGGGCG 180
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GAGAAGGCGGAGGGGATGGAGGAGCTGGAGCTGGAGGAGGGCGGGGGCTCGCCGTCTCCG 240
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 TCGCCGATGACGGCCGCCGGGAAGATGCAGGCGCTGGACTTCGAGCACATCGGGTCGCTC 300
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GCCGCGGTGGCGGAGTCGCTCTCGACGGGGAGCAAGTGGCGGAGGGCGCTCACCAGCGTG 360
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 CGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTC 420
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 ATGCTCCACTACCTCTCCGCCAACCACCAAGGATGGGTTTTCCTTTTCAGCTTAATCGGC 480
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 ATCACGCCCTTGGCTGAGAGATTGGGATATGCGACCGAGCAGCTTGCTCTCTACACGGGT 540
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 CCGACAATTGGGGGGCTGTTGAATGCTACCTTTGGCAATGCGACTGAGATGATTATCTCG 600
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 TTGTACGCATTGAAAAACGGGATGATCCGTGTCGTCCAGCAATCGCTACTAGGCTCTATA 660
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 CTGTCAAACATGCTGTTGGTTCTCGGTTGTGCTTTCTTCGCTGGGGGTCTTGTCCATCCC 720
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 AGCAGGGACCAGGTCTTCAACAAGGCGTCAGCCGTTGTAAACTCAGGATTGCTTTTGATG 780
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GCTGTCTTGGGTCTAATGTTTCCAGCAGTACTTCACTTTACACATTCTGAAGTGCAGTAT 840
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GGAAAATCCGAAGTTTCCCTTTCAAGGTTTAGTAGCTGCATCATGCTTGTGGCATATGCA 900
consensus_9119#1 ----TATCTG----TTGGCTTTTTGTGTTGNCTATTTGGATTTCGATTCTCTC-----TG 47
*** * ** **** *** ** ** ** * ** * *
consensus_9119#0 AGCTATCTGTTTTTTCAACTAAAGAGCCAGCGAAGTCTGTACAGTCCAATTGGTGAACAG 960
consensus_9119#1 GGTNCCTGGTAGACNCCATACAGGTNTTGAAGAGTTCGTTGAAGATTACATCATGCCTGT 107
* ** * * * * ** ** * ** * * **
consensus_9119#0 GAAGAAGAAGTAACTGAGGATGAGGAGGAAGAAAAGGAGATAACACAGGGTGAAGCTATC 1020
consensus_9119#1 TATATGTTGCTCCCNTCAGACCTGGATTTCGCTAGTTACTTNCCTTTATTATTTGCTGCT 167
* * * ** *** * * * * * ***
consensus_9119#0 TGT-TGGCTTTTTGTGTTGACTATTTGGATTTCGATTCTCTCTGGGTACCTGGT--AGAC 1077
consensus_9119#1 TCTATGCCATATTAAGCGAGGAAATNTATTTTTTACCCTTTAACATTGCATCATTCATAT 227
* * ** * * ** * * * *** * ** * * * * * * *
consensus_9119#0 GCCATA-CAGGGGGCCTCTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCT 1136
consensus_9119#1 GTTATAACAGGGGGCCTNTGAATCATTAAACATGCCAGTGGCCTTTATTAGTGTTATTCT 287
* *** ********** ******************************************
consensus_9119#0 GCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGA 1196
consensus_9119#1 GCTTCCAATCGTGGGAAATGCTGCTGAGCACGCAAGTGCCATTATGTTTGCCATGAAAGA 347
************************************************************
consensus_9119#0 CAAACTTGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGT 1256
consensus_9119#1 CAAACTTG-TAAGGAACCAAAGGATACTATT------TCAATAT-GGTTTATATGTTAAA 399
******** ** ** * * * ** **** * * * * *****
consensus_9119#0 GATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCA 1316
consensus_9119#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 431
* * ** * **
consensus_9119#0 ACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGGA 1376
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 AGGAACATCGAACTATTTTAAAGGCCTTATGCTTATCTTATGCTATCTCATAGTTGCTGC 1436
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GAGCTTCTTCGTACATGTTGATCCCGATTCAAGTAACAACAAGTGAAAGATCCGCAACAA 1496
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 TTTGTGGAATGATAAGGGATGAGCATATTGGAATGTCAGCACTAGCAAACAGCAGTATTT 1556
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GCAACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTC 1616
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 ACACGGAGGCTTCAACTTCCGGCCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGA 1676
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 TAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTATTATGGGATAGTGTAATGT 1736
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GCCAAGATCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTG 1796
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 TTGTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGG 1856
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 ACTACATAGTCCATACACATTTCCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGC 1916
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 ACATAATTTATTTGTCTAGGATGGGTTGCTCGTTTTTGAATGCTTGCTTGCTTATAAGAG 1976
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 AACATGGTTCTAGACTTTTANAGACTGCTCATCAAACTAACCATGGCNTGTNCTGGNGAG 2036
consensus_9119#1 ------------------------------------------------------------
consensus_9119#0 GGGAAAATCATTTCAGACT 2055
consensus_9119#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||