These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1222 fasta sequence [CCGGACCGCTCCTCCCACCAGAAGCGTCGTCGTCTCCGCCTCTGGAGGCAGCGACGCCGGCCGGTTGCCGCCGCCGCCTACCCTTCCTCACTCCACCTCTCCGACTAATCGCCGCCGCCTTCGCCGCCGCCGGAGGCCTAGAATGGCGTCCACATCCGCCGCGGAGCCTGGCGTCCGGTTCTCCGACCGAGCGGCGAGGAGGTCGTCGCTGGGCCTGAGGTCGATGGTGCTCCTGATGCACGTGGTCTTCGTCGGCGCCGTCTTCCTGCTCGATCCGACCCTCGACAGGCGAATCCGCGAGGAGCCCTGGTACATAGGGGCATATGGAGCGCTTGTTTTGATCGCCTTAGTGCAGTATTTCTACACAGCTGGTTCATCTCCTGGGTATGTTCTCGATGCAATGAAAGCTGGTTCGACGATGCACGCAACCTACATCAATACTGCCACTCTTTCGAA-----ACAATCAAGTCCAAACAATGGTAGCTTAAATTCCCCTTTGAGCCTCCCTCAACAGCAGAAACTTAATCCGACCACTTCTACATCAACATGGTTGCAGCGAGTTGCAGAATTATACCCCCCTGGGTCAAGTAGCAGGGATTGGACTTGCACTTACTGCAGGGTTATTCAGCCACCTCGTACTAGGCATTGCCATGACTGTGACAAATGTGTCCTTCAGTTTGATCATCACTGTGTTTGGCTTGGAACATGCATTGGGAAAAAGAACCACTGCAGATTCTGGTGGTACATATTTGAAGAAACAATCCTGAGTATCTGGACAGTTGCTCTCTACATTGACTCGATACGTTTAGATGTTGACAAGGCCTGGTGGAAGGATTTTATTGGCGTAATCCTGTTGGCTGTGTTGATCTTTATTCTCATATTCTTGCTACTATTGTTGATCTTTCATACTTACATCGCTCTTACAAATCAAACAACCTACGAAGTTGCCCGAAGGAAGCGGATATTCTACATGAGGGGTATACCCGACAAAGTTCATCCATT-CAGTAAAGGCATCTGTAGGAACATCTACGTCTTCTGCTTCTCTAGACAGAAGGGATATGATCTAGAAGAGGTGCCCCCACTTGAAGAGTTGGAAGCCAGAGCTGCTCCCTACACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTTTCACATGTGGAAGCATATGCTTAGCCTGTGT] [+] EMBL CF322588 [CCGGACCGCTCCTCCCACCAGAAGCGTCGTCGTCTCCGCCTCTGGAGGCAGCGACGCCGGCCGGTTGCCGCCGCCGCCTACCCTTTCTCACTCCACCTCTCCGACTAATCGCCGCCGCCTTCGCCGCCGCCGGAGGCCTAGAATGGCGTCCACATCCGCCGCGGAGCCTGGCGTCCGGTTCTCCGACCGAGCGGCGAGGAGGTCGTCGCTGGGCCTGAGGTCGATGGTGCTCCTGATGCACGTGGTCTTCGTCGGCGCCGTCTTCCTGCTCGATCCGACCCTCGACAGGCGAATCCGCGAGGAGCCCTGGTACATAGGGGCATATGGAGCGCTTGTTTTGATCGCCTTAGTGCAGTATTTCTACACAGCTGGTTCATCTCCTGGGTATGTTCTCGATGCAATGAAAGCTGGTTCGACGATGCACGCAACCTACATCAATACTGCCACTCTTTCGAA ACAATCAAGTCCAAACAATGGT ] [+] EMBL AK061316 [ CGCTCCTCCCACCAGAAGCGTCGTCGTCTCCGCCTCTGGAGGCAGCGACGCCGGCCGGTTGCCGCCGCCGCCTACCCTTCCTCACTCCACCTCTCCGACTAATCGCCGCCGCCTTCGCCGCCGCCGGAGGCCTAGAATGGCGTCCACATCCGCCGCGGAGCCTGGCGTCCGGTTCTCCGACCGAGCGGCGAGGAGGTCGTCGCTGGGCCTGAGGTCGATGGTGCTCCTGATGCACGTGGTCTTCGTCGGCGCCGTCTTCCTGCTCGATCCGACCCTCGACAGGCGAATCCGCGAGGAGCCCTGGTACATAGGGGCATATGGAGCGCTTGTTTTGATCGCCTTAGTGCAGTATTTCTACACAGCTGGTTCATCTCCTGGGTATGTTCTCGATGCAATGAAAGCTGGTTCGACGATGCACGCAACCTACATCAATACTGCCACTCTTTCGAA ATAATCAAGTCCAAACAATGGTAGCTTAAATTCCCCTTTGAGCCTCCCTCAACAGCAGAAACTTAATCCGACCACTTCTACATCAACATGGTTGCAGCGAGTTGCAGAATTATACCCCCCTGGGTCAAGTAGCAGGGATTGGACTTGCACTTACTGCAGGGTTATTCAGCCACCTCGTACTAGGCATTGCCATGACTGTGACAAATGTGTCCTTCAGTTTGATCATCACTGTGTTTGGCTTGGAACATGCATTGGGAAAAAGAACCACTGCAGATTCTGGTGGTACATATTTGAAGAAACAATCCTGAGTATCTGGACAGTTGCTCTCTACATTGACTCGATACGTTTAGATGTTGACAAGGCCTGGTGGAAGGATTTTATTGGCGTAATCCTGTTGGCTGTGTTGATCTTTATTCTCATATTCTTGCTACTATTGTTGATCTTTCATACTTACATCGCTCTTACAAATCAAACAACCTACGAAGTTGCCCGAAGGAAGCGGATATTCTACATGAGGGGTATACCCGACAAAGTTCATCCATT CAGTAAAGGCATCTGTAGGAACATCTACGTCTTCTGCTTCTCTAGACAGAAGGGATATGATCTAGAAGAGGTGCCCCCACTTGAAGAGTTGGAAGCCAGAGCTGCTCCCTACACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTTTCACATGTGGAAGCATATGCTTAGCCTGTG ] [+] EMBL CB677497 [ ACCAGAAGCGTCGTCGTCTCCGCCTCTGGAGGCAGCGACGCCGGCCGGTTGCCGCCGCCGCCTACCCTTCCTCACTCCACCTCTCCGACTAATCGCCGCCGCCTTCGCCGCCGCCGGAGGCCTAGAATGGCGTCCACATCCGCCGCGGAGCCTGGCGTCCGGTTCTCCGACCGAGCGGCGAGGAGGTCGTCGCTGGGCCTGAGGTCGATGGTGCTCCTGATGCACGTGGTCTTCGTCGGCGCCGTCTTCCTGCTCGATCCGACCCTCGACAGGCGAATCCGCGAGGAGCCCTGGTACATAGGGGCATATGGAGCGCTTGTTTTGATCGCCTTAGTGCAGTATTTCTACACAGCTGGTTCATCTCCTGGGTATGTTCTCGATGCAATGAAAGCTGGTTCGACGATGCACGCAACCTACATCAATACTGCCACTCTTTCGAAAAAAGACAATCAAGTCCAAACAATGGTAGCTTAAATTCCCCTTTGAGCCTCCCTCAACAGCAGAAACTTAATCCGACCACTTCTACATCAACATGGTTGCAGCGAGTTGCAGAATTATACCCCCCTGGGTCAAGTAGCAGGGATTGGACTTGCACTTACTGCAGGGTTATTCAGCCACCTCGTACTAGGCATTGCCATGACTGTGACAAATGTGTCCTTCAGTTTGATCATCACTGTGTTTGGCTTGGAACATGCATTGGGAAAAAGAACCACTGCAGATTCTGGTGGTACATATTTGAAGAAACAATCCTGAGTATCTGGACANGTGCTCTCTACATTGAC ] [+] EMBL CA765295 [ ACTTACTGCAGGGTTATTCAGCCACCTCGTACTAGGCATTGCCATGACTGTGACAAATGTGTCCTTCAGTTTGATCCTCACTGTGTTTGGCTTGGAACATGCATTGGGAAAAAGAACCACTGCAGATTCTGGTGGTACATATTTGAAGAAACAATCCTGAGTATCTGGACAGTTGCTCTCTACATTGACTCGATACGTTTAGATGTTGACAAGGCCTGGTGGAAGGATTTTATTGGTGTAATCCTGTTGGCTGTGTTGATCTTTATTCTCATATTCTTGCTACTATTGTTGATCTTTCATACTTACATCGCTCTTACAAATCAAACAACCTACGAAGTTGCCCGAAGGAAGCGGATATTCTACATGAGGGGTATACCCGACAAAGTTCATCCATT CAGTAAAGGCATCTGTAGGAACATCTACGTCTTCTGCTTCTCTAGACAGAAGGGATATGATCTAGAAGAGGTGCCCCCACTTGAAGAGTTGGAAGCCAGAGCTGCTCCCTACACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTTTCACATGTGGAAGCATATGCTTAGCCTGTG ] [-] EMBL CA762627 [ GGAACATGCATTGGGAAAAAGAACCACTGCAGATTCTGGTGGTACATATTTGAAGAAACAATCCTGAGTATCTGGACAGTTGCTCTCTACATTGACTCGATACGTTTAGATGTTGACAAGGCCTGGTGGAAGGATTTTATTGGTGTAATCCTGTTGGCTGTGTTGATCTTTATTCTCATATTCTTGCTACTATTGTTGATCTTTCATACTTACATCGCTCTTACAAATCAAACAACCTACGAAGTTGCCCGAAGGAAGCGGATATTCTACATGAGGGGTATACCCGACAAAGTTCATCCATT CAGTAAAGGCATCTGTAGGAACATCTACGTCTTCTGCTTCTCTAGACAGAAGGGATATGATCTAGAAGAGGTGCCCCCACTTGAAGAGTTGGAAGCCAGAGCTGCTCCCTACACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTTTCACATGTGGAAGCATATGCTTAGCCTGTGT] [+] EMBL BI806081 [ acTTGACTCGATACGTTTAGATGTTGACAA GCCTGGTGGAAGGATTTTATTGGCGTAATCCTGTT GCTGTGTTGATCTTTATTCTCATATTCTTGCTACTATTGTTGATCTTTCATACTTACATCGCTCTTAC AATC AACA CTACGAAGTTGCCCGAAGGAAGCGGATATTCTACATGAGGGGTATACCTGAC AAGTTCATCCATTCCAGTAAAGGCATCTGTAGGAACATCTACGTCTTCTGCTTCTCTAGACAGAAGGGATATGATCTAGAAGAGGTGCCCCCACTTGAAGAGTTGGAAGCCAGAGCTGCTCCCTACACATGCCGCGATATAATCTGCTGCCGGTGCTGTTGATCTTGTACATGTCAATATATGTTACTACCATAGCATTCTTTTTTTCACATGTGGAAGCATATGCTTAGCCTGTG ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||