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Oryza sativa
cluster # 9123 cluster # 9123       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9123#0 length = 2027 sequences # 4  
consensus_9123#1 length = 736 sequences # 1  
consensus_9123#2 length = 596 sequences # 1  

consensusID : consensus_9123#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2027
fasta sequence
                              [CTCCCCTCTCCCTCTCTCACTCTACCAAACTGCAGAGGAGAGGAGAATGGCGATCGCTCTCCGATTAGCGGCCGCGCCGCTCCGCCTCCGCCTCGTCTCGCCGGCCCCTCCGGCGATCGGCGGCGCGGGAGATGGAGGACGACGAGGAGGAGGAGGAGCAGCTCGTATCGGTGTCCTGGGCAGGGCTCGCTGCCGCCGCCGCCGCGGCGGAGGCGGGAGACTGGAGGTGGCGGCGGCGGCCGCCGATGACTCCGCTCGCTGTCGGGCCAAGGGAGTGGGCGCCGCCGCCGCCGCGGCGGAAACCCTAGGTGGGATCGGGGTGGGAGGTGGGGACCAGCTGAGCGTGGTGATGAAGTTCGGGGGGTCGTCGGTGTCGTCGGCGGCGAGGATGCGGGAGGTGGCGGGCCTCATCCTCGCCTTCCCCGAGGAGCGCCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATCTCCTCCTCCTCGCTGGTGAGAAGGCAGTGGGATGCGGCGTGATCCGTGTTTCGGAAATTGAAGAGTGGAATTTGATCAAAGATCTACACATTAAAACTGTGGAGGAACTTGCACTGCCAAGATCTGTAATACACACTATGCTGGATGAACTGGAGCAGCTCTTGAAAGGTATTGCAATGATGAAAGAGCTGACACTTCGGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGTACGACGCATTTGATATTGGTTTCATAACAACAGACGATTTCGGAAACGCGGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGGTATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAAGGTTGTGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACTCGGATGCTTGGTCAATTTGGTTTTCTGGCAAAGGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTCCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGAGCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATGCAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGGATCTAAAGTGCCTTAAAAGTATTAAAAAAACTTGATC]

[+] EMBL AK073189             [CTCCCCTCTCCCTCTCTCACTCTACCAAACTGCAGAGGAGAGGAGAATGGCGATCGCTCTCCGATTAGCGGCCGCGCCGCTCCGCCTCCGCCTCGTCTCGCCGGCCCCTCCGGCGATCGGCGGCGCGGGAGATGGAGGACGACGAGGAGGAGGAGGAGCAGCTCGTATCGGTGTCCTGGGCAGGGCTCGCTGCCGCCGCCGCCGCGGCGGAGGCGGGAGACTGGAGGTGGCGGCGGCGGCCGCCGATGACTCCGCTCGCTGTCGGGCCAAGGGAGTGGGCGCCGCCGCCGCCGCGGCGGAAACCCTAGGTGGGATCGGGGTGGGAGGTGGGGACCAGCTGAGCGTGGTGATGAAGTTCGGGGGGTCGTCGGTGTCGTCGGCGGCGAGGATGCGGGAGGTGGCGGGCCTCATCCTCGCCTTCCCCGAGGAGCGCCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATCTCCTCCTCCTCGCTGGTGAGAAGGCAGTGGGATGCGGCGTGATCCGTGTTTCGGAAATTGAAGAGTGGAATTTGATCAAAGATCTACACATTAAAACTGTGGAGGAACTTGCACTGCCAAGATCTGTAATACACACTATGCTGGATGAACTGGAGCAGCTCTTGAAAGGTATTGCAATGATGAAAGAGCTGACACTTCGGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGTACGACGCATTTGATATTGGTTTCATAACAACAGACGATTTCGGAAACGCGGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGGTATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAAGGTTGTGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACTCGGATGCTTGGTCAATTTGGTTTTCTGGCAAAGGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTACATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGAGCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATGCAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGGATCTAAAGTGCCTTAAAAGTATTAAAAA         ]
[+] EMBL CB666188             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCACTCCCTAGATCTGTAATACACACTATGCTGGATGAACTGGAGCAGCTCTTGAAAGGTATTGCAATGATGAAAGAGCTGACACTTCGGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGTACGACGCATTTGATATTGGTTTCATAACAACAGACGATTTCGGAAACGCGGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGGTATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAAGGTTGTGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACTCGGATGCTTGGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AB042521             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGTACGACGCATTTGATATTGGTTTCATAACAACAGACGATTTCGGAAACGCGGACATCTTGGAGGCAGCTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGATTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGGTATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAAGGTTGTGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACTCGGATGCTTGGTCAATTTGGTTTTCTGGCAAAGGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGGGCTTGAGAAAATTGCAGTTGTCCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGAGCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATGCAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGGATCTAAAGTGCCTTAAAAGTATTAAAAAAACTTGATC]
[-] EMBL CB666189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGTGTCGCTGGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGAACTTGCCCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTCCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCCCCAGGCGTTTTTTGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCCCATGAGCTGATCAGCTTAGTCCGTACACCCCCAGAAAAACAAATATTGCACCCTGGAGCAGGTTTTTTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCACCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGCCATTTGGTAGCTCGATCTGTTTTTTCCCAGGATGCAAAACGACTGGAGCATGGGTCCCAAGTTCCTCGCTTGAATGTGCTTTCCCTTTGGATCTAAAGGCCCTTAAAAGGGTTAAAAAAACTTn   ]


>consensus_9123#0 CTCCCCTCTCCCTCTCTCACTCTACCAAACTGCAGAGGAGAGGAGAATGGCGATCGCTCT CCGATTAGCGGCCGCGCCGCTCCGCCTCCGCCTCGTCTCGCCGGCCCCTCCGGCGATCGG CGGCGCGGGAGATGGAGGACGACGAGGAGGAGGAGGAGCAGCTCGTATCGGTGTCCTGGG CAGGGCTCGCTGCCGCCGCCGCCGCGGCGGAGGCGGGAGACTGGAGGTGGCGGCGGCGGC CGCCGATGACTCCGCTCGCTGTCGGGCCAAGGGAGTGGGCGCCGCCGCCGCCGCGGCGGA AACCCTAGGTGGGATCGGGGTGGGAGGTGGGGACCAGCTGAGCGTGGTGATGAAGTTCGG GGGGTCGTCGGTGTCGTCGGCGGCGAGGATGCGGGAGGTGGCGGGCCTCATCCTCGCCTT CCCCGAGGAGCGCCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATCTCCTCCT CCTCGCTGGTGAGAAGGCAGTGGGATGCGGCGTGATCCGTGTTTCGGAAATTGAAGAGTG GAATTTGATCAAAGATCTACACATTAAAACTGTGGAGGAACTTGCACTGCCAAGATCTGT AATACACACTATGCTGGATGAACTGGAGCAGCTCTTGAAAGGTATTGCAATGATGAAAGA GCTGACACTTCGGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGAT TTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGTACGACGCATTTGATAT TGGTTTCATAACAACAGACGATTTCGGAAACGCGGACATCTTGGAGGCAACTTATCCTGC TGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGG GTTCCTTGGGAAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGA CTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGGTATGGAAAGA TGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATA CTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACA ATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCC TAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAAGGTTGTGCTAACTAG CATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACTCGGATGCTTGGTCA ATTTGGTTTTCTGGCAAAGGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTG TGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAG GGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGT CCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCT TATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTC GCAAGGTGCATCCAAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTG CATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGA AGCCCTTCACATGAGCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAA CCTGGAGCAGGTTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTC GATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGT TTTTTACCAGGATGCAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCT TTCACTTTGGATCTAAAGTGCCTTAAAAGTATTAAAAAAACTTGATC



consensusID : consensus_9123#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 736
fasta sequence
                              [GATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTCCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTAGTCCTTGATAAGACTGTTCTCACACTTGACAACGCTGTATCCATGTCCTGGTTCCTGATATCAATGTTGCCGCCTTCAACAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGAGCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATGCAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGAATGTAAAGTGCCTTAAAAGTATTAAAAAAACTTGAT]

[-] EMBL CB677743             [GATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTCCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCAAGGTAGTCCTTGATAAGACTGTTCTCACACTTGACAACGCTGTATCCATGTCCTGGTTCCTGATATCAATGTTGCCGCCTTCAACAGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGAGCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATGCAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGAATGTAAAGTGCCTTAAAAGTATTAAAAAAACTTGAT]


>consensus_9123#1 GATTGTGTGGCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGG AGCAGGGAACTTATTCAACAGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCA GTTGTCCATCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCA TCTCTTATACTGGAAAAGGCCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATG ATCTCGCAAGGTGCATCCAAGGTAGTCCTTGATAAGACTGTTCTCACACTTGACAACGCT GTATCCATGTCCTGGTTCCTGATATCAATGTTGCCGCCTTCAACAGGTTAACATGTCTCT GATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTTCGA GGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGAGCTGATCAGCTTAGTC CGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTTTCTAGCATCGCCTCCA GTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCCTCGCTAGTTCAGGTGG TTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATGCAAAACGACTGGAGCA TGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGAATGTAAAGTGCCTTAAAAGT ATTAAAAAAACTTGAT



consensusID : consensus_9123#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence
                              [GGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGACGATTTCGGAAACGCGGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGAAGTCAATCGTCATCACTTGCAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAANGGTTGTGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACT]

[+] EMBL CF322694             [GGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTTATTTGAACAAAATCGGAGTAAAAGCACGGCAGACGATTTCGGAAACGCGGACATCTTGGAGGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGATACCTATTGTTACTGGGTTCCTTGGGAAGAAGTCAATCGTCATCACTTGCAGGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTCGTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAANGGTTGTGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACT]


>consensus_9123#2 GGACCACTGACTACCTTGTTTCATTTGGGGAGTGCATGTCTACACGGATTTTTGCTGCTT ATTTGAACAAAATCGGAGTAAAAGCACGGCAGACGATTTCGGAAACGCGGACATCTTGGA GGCAACTTATCCTGCTGTTGCGAAGAGATTACATGGAGACTGGATTCGTGATCCAGCGAT ACCTATTGTTACTGGGTTCCTTGGGAAGAAGTCAATCGTCATCACTTGCAGGGCTGGAAA TCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGT ATGGAAAGATGTTGATGGTGTACTGACCTGTGATCCAAATATCTACCCGAATGCAACCAC TGTGCCATACTTAACATTTGAAGAGGCAGCAGAACTTGCTTATTTTGGTGCCCAGGTATT ACATCCACAATCTATGAGACCTGCTAGAGAAGGTGATATACCAGTCAGGGTTAAGAATTC GTACAACCCTAAAGCTCCAGGCACCCTGATCACTAAACAAAGAGAGATGGATAANGGTTG TGCTAACTAGCATAGTGCTCAAGTCAAATGTCACTATGTTGGATATAGTAAGCACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9123#0      CTCCCCTCTCCCTCTCTCACTCTACCAAACTGCAGAGGAGAGGAGAATGGCGATCGCTCT 60
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CCGATTAGCGGCCGCGCCGCTCCGCCTCCGCCTCGTCTCGCCGGCCCCTCCGGCGATCGG 120
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CGGCGCGGGAGATGGAGGACGACGAGGAGGAGGAGGAGCAGCTCGTATCGGTGTCCTGGG 180
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CAGGGCTCGCTGCCGCCGCCGCCGCGGCGGAGGCGGGAGACTGGAGGTGGCGGCGGCGGC 240
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CGCCGATGACTCCGCTCGCTGTCGGGCCAAGGGAGTGGGCGCCGCCGCCGCCGCGGCGGA 300
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      AACCCTAGGTGGGATCGGGGTGGGAGGTGGGGACCAGCTGAGCGTGGTGATGAAGTTCGG 360
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      GGGGTCGTCGGTGTCGTCGGCGGCGAGGATGCGGGAGGTGGCGGGCCTCATCCTCGCCTT 420
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CCCCGAGGAGCGCCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATCTCCTCCT 480
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CCTCGCTGGTGAGAAGGCAGTGGGATGCGGCGTGATCCGTGTTTCGGAAATTGAAGAGTG 540
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      GAATTTGATCAAAGATCTACACATTAAAACTGTGGAGGAACTTGCACTGCCAAGATCTGT 600
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ---------------------------------------------------GATTGTGTG 9
                                                                                  

consensus_9123#0      AATACACACTATGCTGGATGAACTGGAGCAGCTCTTGAAAGGTATTGCAATGATGAAAGA 660
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      GCTACTAGTGAAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAA 69
                                                                                  

consensus_9123#0      GCTGACACTTCGGACCACTGACTACCTTGTTTCA---TTTGGGGAG--TGCATGTCTACA 715
consensus_9123#2      -----------GGACCACTGACTACCTTGTTTCA---TTTGGGGAG--TGCATGTCTACA 44
consensus_9123#1      CTTATTCAACAGGAAC-TTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTCCA 128
                                 *** *  **** *  * ***  *    *** * *   ****  * * **

consensus_9123#0      CGGATTTTTGCTGCTTATTTGAACAAAA-TCGGAGTAAAAGCACGGCAGTACGACGCATT 774
consensus_9123#2      CGGATTTTTGCTGCTTATTTGAACAAAA-TCGGAGTAAAAGCACGGCAG----------- 92
consensus_9123#1      TCTACTTCAGCAGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTAT 188
                         * **  ** *        ** *  * **   * *** * *****             

consensus_9123#0      TGATATTGGTTTCATAACAACAGACGATTTCGGAAACGCGGAC--ATCTTGGAGGCAACT 832
consensus_9123#2      -----------------------ACGATTTCGGAAACGCGGAC--ATCTTGGAGGCAACT 127
consensus_9123#1      ACTGGAAAAGGCCTTTCA-----AGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATC 243
                                             *   **  ***** ****    *   *  **   *  

consensus_9123#0      TATCCTGCTGTTGCGAAGAGATTACATGG--AGACTGGATTCGTGATCCAGCGATACC-T 889
consensus_9123#2      TATCCTGCTGTTGCGAAGAGATTACATGG--AGACTGGATTCGTGATCCAGCGATACC-T 184
consensus_9123#1      TCGCAAGGTGCATCCAAGGTAGTCCTTGATAAGACTGTTCTCAC-ACTTGACAACGCTGT 302
                      *  *  * **   * ***  * * * **   ******   **   *     * *  *  *

consensus_9123#0      ATTGTTACTGGGTTCCTTGGGAAG-----------------------GGCTGGAAATCAG 926
consensus_9123#2      ATTGTTACTGGGTTCCTTGGGAAGAAGTCAATCGTCATCACTTGCAGGGCTGGAAATCAG 244
consensus_9123#1      ATCCATGTCCTGGTTCCTGATATCAATGTTGCCGCCTTCA---ACAGGTTAACATGTCTC 359
                      **   *     * * * **  *                         *     *  **  

consensus_9123#0      GCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAG 986
consensus_9123#2      GCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTA--- 301
consensus_9123#1      TGATTGT--TCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCCACCAGGCGTTCTT 417
                          ***   **   ***   *     ******  *  *   *  * ****   **    

consensus_9123#0      CCCTGGGGTTGAGAGAAATTCAGGTATGGAAAGATGTTGATGGTGTA--CTGACCTGTGA 1044
consensus_9123#2      --------------------------TGGAAAGATGTTGATGGTGTA--CTGACCTGTGA 333
consensus_9123#1      CGA-------------GGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGA 464
                                                  ** *** ** ** *  * *  *   *   ***

consensus_9123#0      TCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGA 1104
consensus_9123#2      TCCAAATATCTACCCGAATGCAACCACTGTGCCATACTTAACATTTGAAGAGGCAGCAGA 393
consensus_9123#1      GCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACA---AATATTGCAACCTGGAGCAGG 521
                       *  *  * **       * ***** * *    * *   ** ***  **   * ***** 

consensus_9123#0      ACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTA-GAGAAG 1163
consensus_9123#2      ACTTGCTTATTTTGGTGCCCAGGTATTACATCCACAATCTATGAGACCTGCTA-GAGAAG 452
consensus_9123#1      --TTTTCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTG 579
                        **   **   * *   **** ****   **     * *      * * * * * *  *

consensus_9123#0      GTGATATACCAGTCAGGGTTAAGAATTCGTACAACC-----CTAAAGCTCCAGGCACCCT 1218
consensus_9123#2      GTGATATACCAGTCAGGGTTAAGAATTCGTACAACC-----CTAAAGCTCCAGGCACCCT 507
consensus_9123#1      TTTCCTCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCA 639
                       *      * ***   ***     * *   ***        **  * **        ** 

consensus_9123#0      GATCACTAAACAAAGAGAG-ATGGATAAGG-TTGTGCTAACTAGCATA-GTGCTCAAGTC 1275
consensus_9123#2      GATCACTAAACAAAGAGAG-ATGGATAANGGTTGTGCTAACTAGCATA-GTGCTCAAGTC 565
consensus_9123#1      GGATGCAAAACGACTGGAGCATGCGTCACAAGT-TCCTCGCTTGAATGTGCTTTCACTTT 698
                      *    * **** *   *** ***  * *    * * **  ** * **  *   ***  * 

consensus_9123#0      AAATGTCAC-TATGTTGGATATAGTAAGCACTCGGATGCTTGGTCAATTTGGTTTTCTGG 1334
consensus_9123#2      AAATGTCAC-TATGTTGGATATAGTAAGCACT---------------------------- 596
consensus_9123#1      GAATGTAAAGTGCCTTAAAAGTATTAAAAAAACTTGAT---------------------- 736
                       ***** *  *   **  *  ** ***  *                              

consensus_9123#0      CAAAGGTCTTCTCTATATTCGAAGATCTAGGGATATCTGTAGATTGTGTGGCTACTAGTG 1394
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      AAGTTAGTATTTCTGTGTCGCTTGATCCATCAAAGATCTGGAGCAGGGAACTTATTCAAC 1454
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      AGGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATTGCAGTTGTCCATCTACTTCAGC 1514
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      AGAGGGCAATAATATCACTCATTGGAAACGTACGGCGATCATCTCTTATACTGGAAAAGG 1574
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CCTTTCAAGTGTTGAGGAAAAGCGGGGTGAATGTCCAGATGATCTCGCAAGGTGCATCCA 1634
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      AGGTTAACATGTCTCTGATTGTTCATGATAGCGAGGCAAAGCAGTGCATAAAGGCCCTCC 1694
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      ACCAGGCGTTCTTCGAGGACGATGTCCTGACAGAAGTCGAGGAAGAAGCCCTTCACATGA 1754
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      GCTGATCAGCTTAGTCCGTACAACCCCAGAAAAACAAATATTGCAACCTGGAGCAGGTTT 1814
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      TCTAGCATCGCCTCCAGTTATTTTTTCACTCGTATGACCAGCATTCGATGCGTTGTTTCC 1874
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      TCGCTAGTTCAGGTGGTTTAGTTTGACATTTGGTAGCTCGATCTGTTTTTTACCAGGATG 1934
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      CAAAACGACTGGAGCATGCGTCACAAGTTCCTCGCTTGAATGTGCTTTCACTTTGGATCT 1994
consensus_9123#2      ------------------------------------------------------------
consensus_9123#1      ------------------------------------------------------------
                                                                                  

consensus_9123#0      AAAGTGCCTTAAAAGTATTAAAAAAACTTGATC 2027
consensus_9123#2      ---------------------------------
consensus_9123#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)